Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006720

Physical Location & Seq

Genomic Coordinates Reverse (-)

5697701 .. 5699915

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0065900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTCACAGAGGATCATGAAATGCATCATGGATGGCCTCTAGGGCTTGAGATTATGAGTCTAAGGCTTAGACTGGGGGAGAGCTTACCAGCTGCTGTTATAAGACACCATGTACCTTCTACTAGTTTCACCTCATTTTCTTCCTCAAACCTCGACACTGAGTCTACAGCATCCTTTTTCCAAGACCACAGCATGTCACTAGGCCGGCTAATTGGGATTCGAACCAACGATAGAGGGCGCTTGTACTACCCGAATCCAACTAGATTCGAAGAACATGACAGGGTTTCTTTAAGAGCTAGTTCACGAAATTCTGATGTCTCCAGAAGACATCAAGTAAACATGTCTAGACGGATTTGCTTACCGCTGCTGCTTGGTGCTCTTGTAAAGATGAGCAGGAGTAAGAACAAGTCTAAGAAGCCAAAGTTTGAAGGCAAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

146

Amino Acids

16.7

Weight (kDa)

10.44

Isoelectric Point (pI)

70.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20090 AT4G20090
fragaria_vesca	FvH4_3g13070 FvH4_3g13070 FvH4_3g13070 FvH4_3g13070
malus_domestica	MD10G1226600.v1.1
prunus_persica	Prupe.4G118800_v2.0.a1
pyrus_communis	pycom05g22130 pycom05g22140 pycom10g19050
rosa_chinensis	RchiOBHm_Chr5g0021261
rosa_laevigata	RLG00000032600
rosa_multiflora	Rmu_sc0003392.1_g000013 Rmu_sc0004847.1_g000003
rosa_roxburghii	Rroxscaffold_1G00057240
rosa_rugosa	Rorug05G0065600 Rorug05G0065700 Rorug05G0065800 Rorug05G0065900 Rorug05G0065900
rosa_samantha	Rh5AG154600 Rh5BG154400 Rh5CG168000 Rh5DG154700
rosa_wichuraiana	Rw5G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	164
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	307
AfaI	GTAC	2 cut(s)	114, 245
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	428
AhdI	GACNNNNNGTC	1 cut(s)	160
AhlI	ACTAGT	1 cut(s)	122
AluBI	AGCT	3 cut(s)	84, 92, 296
AluI	AGCT	3 cut(s)	84, 92, 296
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	35, 202
ApeKI	GCWGC	3 cut(s)	92, 364, 367
ApoI	RAATTY	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	121
AsuII	TTCGAA	2 cut(s)	220, 267
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	3 cut(s)	79, 351, 354
BccI	CCATC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	322
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	6 cut(s)	41, 123, 200, 261, 297, 345
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	241
BglI	GCCNNNNNGGC	1 cut(s)	43
BisI	GCNGC	3 cut(s)	93, 365, 368
BlsI	GCNGC	3 cut(s)	94, 366, 369
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	34, 179
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	304
Bpu14I	TTCGAA	2 cut(s)	220, 267
BpuEI	CTTGAG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	38, 170
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	79, 351, 354
BshFI	GGCC	2 cut(s)	37, 204
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	37, 204
Bsp119I	TTCGAA	2 cut(s)	220, 267
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	2 cut(s)	37, 204
BspCNI	CTCAG	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	16
BspPI	GGATC	1 cut(s)	21
BspT104I	TTCGAA	2 cut(s)	220, 267
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	204
BssMI	GATC	1 cut(s)	13
BstBI	TTCGAA	2 cut(s)	220, 267
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	4 cut(s)	62, 68, 159, 411
BstF5I	GGATG	2 cut(s)	38, 170
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNSI	RCATGY	2 cut(s)	196, 343
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	3 cut(s)	79, 351, 354
BstV2I	GAAGAC	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	37, 204
BtsCI	GGATG	2 cut(s)	38, 170
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	206
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	16
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	113, 244
CviAII	CATG	6 cut(s)	17, 29, 110, 193, 275, 340
CviJI	RGCY	9 cut(s)	37, 46, 67, 84, 92, 204, 208, 296, 418
CviKI_1	RGCY	9 cut(s)	37, 46, 67, 84, 92, 204, 208, 296, 418
CviQI	GTAC	2 cut(s)	113, 244
DdeI	CTNAG	4 cut(s)	62, 68, 159, 411
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DriI	GACNNNNNGTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	27
FaeI	CATG	6 cut(s)	20, 32, 113, 196, 278, 343
FaiI	YATR	8 cut(s)	18, 30, 56, 101, 111, 194, 276, 341
FatI	CATG	6 cut(s)	16, 28, 109, 192, 274, 339
FblI	GTMKAC	1 cut(s)	164
Fnu4HI	GCNGC	3 cut(s)	93, 365, 368
FokI	GGATG	2 cut(s)	45, 157
Fsp4HI	GCNGC	3 cut(s)	93, 365, 368
FspBI	CTAG	6 cut(s)	41, 123, 200, 261, 297, 345
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	3 cut(s)	93, 365, 368
GsuI	CTGGAG	1 cut(s)	304
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	2 cut(s)	37, 204
HapII	CCGG	1 cut(s)	205
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	6 cut(s)	20, 32, 113, 196, 278, 343
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	5 cut(s)	58, 161, 217, 253, 264
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	3 cut(s)	165, 302, 337
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	4 cut(s)	17, 303, 321, 345
Hpy8I	GTNNAC	3 cut(s)	165, 302, 337
HpyAV	CCTTC	2 cut(s)	126, 422
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	4 cut(s)	62, 68, 159, 411
Hsp92II	CATG	6 cut(s)	20, 32, 113, 196, 278, 343
HspAI	GCGC	1 cut(s)	238
KroI	GCCGGC	1 cut(s)	204
KroNI	GCCGGC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	59, 102, 218, 265, 334, 379
Lsp1109I	GCAGC	3 cut(s)	79, 351, 354
LweI	GCATC	2 cut(s)	34, 179
MaeI	CTAG	6 cut(s)	41, 123, 200, 261, 297, 345
MaeIII	GTNAC	2 cut(s)	4, 195
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	3 cut(s)	132, 281, 336
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	2 cut(s)	210, 307
MlyI	GAGTC	2 cut(s)	67, 170
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	6 cut(s)	4, 48, 142, 154, 161, 227
Mph1103I	ATGCAT	1 cut(s)	27
MroNI	GCCGGC	1 cut(s)	204
MseI	TTAA	1 cut(s)	290
MspA1I	CMGCKG	2 cut(s)	92, 364
MspI	CCGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	43
NaeI	GCCGGC	1 cut(s)	206
NdeII	GATC	1 cut(s)	13
NgoMIV	GCCGGC	1 cut(s)	204
NlaIII	CATG	6 cut(s)	20, 32, 113, 196, 278, 343
NmuCI	GTSAC	2 cut(s)	4, 195
NsiI	ATGCAT	1 cut(s)	27
NspI	RCATGY	2 cut(s)	196, 343
NspV	TTCGAA	2 cut(s)	220, 267
PagI	TCATGA	1 cut(s)	16
PciI	ACATGT	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	217, 253, 264
PkrI	GCNGC	3 cut(s)	94, 366, 369
PleI	GAGTC	2 cut(s)	66, 169
PpsI	GAGTC	2 cut(s)	66, 169
PscI	ACATGT	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	2 cut(s)	114, 245
RsaNI	GTAC	2 cut(s)	113, 244
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	3 cut(s)	93, 365, 368
Sau3AI	GATC	1 cut(s)	13
SchI	GAGTC	2 cut(s)	67, 170
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	6 cut(s)	86, 94, 118, 134, 153, 298
SfaNI	GCATC	2 cut(s)	34, 179
SfcI	CTRYAG	1 cut(s)	165
SfuI	TTCGAA	2 cut(s)	220, 267
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SpeI	ACTAGT	1 cut(s)	122
Sse9I	AATT	2 cut(s)	210, 307
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	6 cut(s)	41, 123, 200, 261, 297, 345
TaqI	TCGA	3 cut(s)	153, 220, 267
TasI	AATT	2 cut(s)	210, 307
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	3 cut(s)	217, 253, 264
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	2 cut(s)	4, 195
TseI	GCWGC	3 cut(s)	92, 364, 367
Tsp45I	GTSAC	2 cut(s)	4, 195
TspDTI	ATGAA	1 cut(s)	33
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	307
XbaI	TCTAGA	1 cut(s)	344
XceI	RCATGY	2 cut(s)	196, 343
XmiI	GTMKAC	1 cut(s)	164
XspI	CTAG	6 cut(s)	41, 123, 200, 261, 297, 345
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.