Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009516

Physical Location & Seq

Genomic Coordinates Forward (+)

12502657 .. 12504384

Gene Structure 1728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G201100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGACTACTACTCGCAAGCAGCTTGAAGTTCTAACAGATGATCAAACTCCACACAAATGGTGTGTTTTATTGAGAGAAGATGTGTTCAAGAAGTTCATGTCTCAAGGCAGTCCAGCAGTGCACAAGGTTTTTGGTGGAGGATCATTGTTCAGTCCATTCTTGTTTGGGAAATTTTTTGATCCTTCTGATGCCTTCCCACTGTGGGAGTTTGATGCAGATATCTTGTTGGCTGGTCTCAGAAGCTCTGGTCAAAGCAGTACTGTTGACTGGTTTCAAACAGATCAAGATTATGTACTAAAAGCAGATCTACCAGGAGATGGGAAAAACAATGTTCAGGTCTATGCAGAAAATGGGAAGGTTGTGGAAATTAGTGGGCAGTGGAAGCAGCAAGGAGGAGAGTCCAAGAGCACAAAAGATTGGAGAAGTGGGAATTGGTGGGAACATGGGTATGTTAGGAAGCTTGAGCTCCCACAAGATGCAGATTGGAGAAGAATAGAGGCCTCTGTGACTAATGACCTACTTTTGGAAATCAAAATCCACAAGATCAACCCCTTGGATTGTGATATTAATCGTCTGACCATGAAAGATAAGGAAGCAGTCTACAAAAGAAGAATCAACAAGCAAAGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

220

Amino Acids

25.0

Weight (kDa)

6.91

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54660
fragaria_vesca	FvH4_3g21680 FvH4_3g21680
malus_domestica	MD03G1213300.v1.1 MD11G1228200.v1.1
prunus_persica	Prupe.4G201100_v2.0.a1 Prupe.4G201100_v2.0.a1 Prupe.4G201100_v2.0.a1 Prupe.4G201100_v2.0.a1
pyrus_communis	pycom03g16190 pycom11g20080
rosa_chinensis	RchiOBHm_Chr5g0037161
rosa_laevigata	RLG00000033759
rosa_multiflora	Rmu_ssc0000448.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043820
rosa_rugosa	Rorug05G0161200 Rorug05G0161300
rosa_samantha	Rh5AG252900 Rh5BG254800 Rh5CG287400 Rh5DG263300
rosa_wichuraiana	Rw5G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	600
AclWI	GGATC	2 cut(s)	148, 173
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	2 cut(s)	259, 294
AfeI	AGCGCT	1 cut(s)	651
AfiI	CCNNNNNNNGG	3 cut(s)	202, 317, 523
AgsI	TTSAA	3 cut(s)	26, 88, 275
AjnI	CCWGG	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	5 cut(s)	22, 243, 460, 466, 636
AluI	AGCT	5 cut(s)	22, 243, 460, 466, 636
Alw21I	GWGCWC	3 cut(s)	123, 410, 468
Alw26I	GTCTC	2 cut(s)	105, 239
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	148, 173
Aor51HI	AGCGCT	1 cut(s)	651
AoxI	GGCC	1 cut(s)	498
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	2 cut(s)	19, 385
ApoI	RAATTY	1 cut(s)	170
AseI	ATTAAT	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	652
BaeGI	GKGCMC	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	468
Bbv12I	GWGCWC	3 cut(s)	123, 410, 468
BbvI	GCAGC	2 cut(s)	31, 397
BccI	CCATC	2 cut(s)	311, 635
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	105, 239
BfoI	RGCGCY	1 cut(s)	653
BglII	AGATCT	1 cut(s)	304
BisI	GCNGC	2 cut(s)	20, 386
BlsI	GCNGC	2 cut(s)	21, 387
BmcAI	AGTACT	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	3 cut(s)	178, 202, 466
BpuEI	CTTGAG	2 cut(s)	87, 482
BsaBI	GATNNNNATC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 317, 523
Bse1I	ACTGG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	1 cut(s)	635
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	3 cut(s)	202, 317, 523
BseMII	CTCAG	2 cut(s)	250, 651
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	31, 397
BshFI	GGCC	1 cut(s)	500
BsiHKAI	GWGCWC	3 cut(s)	123, 410, 468
BslI	CCNNNNNNNGG	3 cut(s)	202, 317, 523
BsmAI	GTCTC	2 cut(s)	105, 239
BsnI	GGCC	1 cut(s)	500
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	3 cut(s)	123, 410, 468
Bsp143I	GATC	6 cut(s)	40, 140, 178, 280, 304, 543
BspANI	GGCC	1 cut(s)	500
BspCNI	CTCAG	2 cut(s)	249, 650
BspPI	GGATC	2 cut(s)	148, 173
BspTNI	GGTCTC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	6 cut(s)	40, 140, 178, 280, 304, 543
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	201, 262
BstC8I	GCNNGC	2 cut(s)	17, 654
BstDEI	CTNAG	3 cut(s)	236, 637, 657
BstF5I	GGATG	1 cut(s)	635
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	6 cut(s)	43, 143, 181, 283, 307, 546
BstMAI	GTCTC	2 cut(s)	105, 239
BstMBI	GATC	6 cut(s)	40, 140, 178, 280, 304, 543
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	31, 397
BstX2I	RGATCY	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	500
BtsCI	GGATG	1 cut(s)	635
BtsI	GCAGTG	2 cut(s)	123, 383
BtsIMutI	CAGTG	3 cut(s)	123, 197, 383
Cac8I	GCNNGC	2 cut(s)	17, 654
CfoI	GCGC	1 cut(s)	652
Csp6I	GTAC	2 cut(s)	258, 293
CviAII	CATG	3 cut(s)	97, 443, 580
CviJI	RGCY	7 cut(s)	22, 230, 243, 460, 466, 500, 636
CviKI_1	RGCY	7 cut(s)	22, 230, 243, 460, 466, 500, 636
CviQI	GTAC	2 cut(s)	258, 293
DdeI	CTNAG	3 cut(s)	236, 637, 657
DpnI	GATC	6 cut(s)	42, 142, 180, 282, 306, 545
DpnII	GATC	6 cut(s)	40, 140, 178, 280, 304, 543
Ecl136II	GAGCTC	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	552
Eco147I	AGGCCT	1 cut(s)	500
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	220
Eco47III	AGCGCT	1 cut(s)	651
Eco53kI	GAGCTC	1 cut(s)	466
EcoICRI	GAGCTC	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	552
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	3 cut(s)	100, 446, 583
FaiI	YATR	6 cut(s)	98, 291, 342, 444, 450, 581
FatI	CATG	3 cut(s)	96, 442, 579
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	2 cut(s)	20, 386
FokI	GGATG	1 cut(s)	642
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	2 cut(s)	20, 386
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	2 cut(s)	20, 386
HaeII	RGCGCY	1 cut(s)	653
HaeIII	GGCC	1 cut(s)	500
HhaI	GCGC	1 cut(s)	652
Hin1II	CATG	3 cut(s)	100, 446, 583
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	2 cut(s)	398, 612
Hpy166II	GTNNAC	3 cut(s)	121, 265, 601
Hpy188I	TCNGA	4 cut(s)	187, 239, 576, 640
Hpy188III	TCNNGA	2 cut(s)	88, 284
Hpy8I	GTNNAC	3 cut(s)	121, 265, 601
HpyAV	CCTTC	3 cut(s)	192, 202, 349
HpyCH4III	ACNGT	2 cut(s)	201, 262
HpyCH4V	TGCA	4 cut(s)	121, 215, 344, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	3 cut(s)	236, 637, 657
Hsp92II	CATG	3 cut(s)	100, 446, 583
HspAI	GCGC	1 cut(s)	650
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	6 cut(s)	40, 140, 178, 280, 304, 543
LmnI	GCTCC	1 cut(s)	471
LpnPI	CCDG	7 cut(s)	126, 216, 231, 253, 297, 320, 324
Lsp1109I	GCAGC	2 cut(s)	31, 397
LweI	GCATC	3 cut(s)	178, 202, 466
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	6 cut(s)	42, 142, 180, 282, 306, 545
MboI	GATC	6 cut(s)	40, 140, 178, 280, 304, 543
MboII	GAAGA	3 cut(s)	89, 501, 621
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	3 cut(s)	123, 410, 468
MluCI	AATT	3 cut(s)	170, 366, 430
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	4 cut(s)	131, 386, 490, 511
MseI	TTAA	1 cut(s)	567
MslI	CAYNNNNRTG	2 cut(s)	55, 447
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	382
NdeII	GATC	6 cut(s)	40, 140, 178, 280, 304, 543
NlaIII	CATG	3 cut(s)	100, 446, 583
NmuCI	GTSAC	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	612
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	21, 387
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	2 cut(s)	259, 294
RsaNI	GTAC	2 cut(s)	258, 293
RseI	CAYNNNNRTG	2 cut(s)	55, 447
SacI	GAGCTC	1 cut(s)	468
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	2 cut(s)	20, 386
Sau3AI	GATC	6 cut(s)	40, 140, 178, 280, 304, 543
ScaI	AGTACT	1 cut(s)	259
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	3 cut(s)	123, 410, 468
SetI	ASST	9 cut(s)	24, 129, 245, 339, 360, 462, 468, 519, 638
SfaNI	GCATC	3 cut(s)	178, 202, 466
SmiMI	CAYNNNNRTG	2 cut(s)	55, 447
SmlI	CTYRAG	2 cut(s)	102, 461
SmoI	CTYRAG	2 cut(s)	102, 461
Sse9I	AATT	3 cut(s)	170, 366, 430
SseBI	AGGCCT	1 cut(s)	500
SstI	GAGCTC	1 cut(s)	468
StuI	AGGCCT	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	2 cut(s)	201, 262
TasI	AATT	3 cut(s)	170, 366, 430
TatI	WGTACW	2 cut(s)	257, 292
TfiI	GAWTC	1 cut(s)	612
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	3 cut(s)	123, 204, 383
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	2 cut(s)	19, 385
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	85, 596
TspRI	CASTG	3 cut(s)	123, 204, 383
Van91I	CCANNNNNTGG	1 cut(s)	317
VneI	GTGCAC	1 cut(s)	119
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.