Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009516

Physical Location & Seq

Genomic Coordinates Reverse (-)

17349704 .. 17351139

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTACTACTTCTACTACTCGGAAGCAGCTTGAAGTCGTAAGAGACGATAAAACTCCGCAGAAATGGTGTGTTTTATTGAGAGAAGACGTGTTCAGAAGATTCATGTCTCAGGGCAGTCCAAATCCAACAATCCAGAAGGTCTTTGGTGGTGCATCTTTTTTCAGTCCTTTGTTGTTTGGGAAATTTTTTGATCCTTCTGATGCCTTCCCACTGTGGGAGTTTGAGTCAGATATCTTTCTGTCTGGTCTCAGAAGCGCTGGTCAAAACACTATTGATTGGTTTCAAACAGATCAAGACTATGTCCTTAAAGTAGAGCTACCAGGAGAAGGGAAAAATAATATTCAGGTGTATGCTGAAAATGGGAAGGTGGTGGAAATTAGTGGGCAGTGGAAGCAGCAGCAGCAAGGAGGAGAGTCCAACTCCTCGAAGAGCGCAAAGGATTGGAGAAGTGGGAATTGGTGGGAACATGGTTATGTTCGGAGGCTTGAGCTCCCACAAGATGCAGATTCCAAAAGGATAGAGGCTTCTCTCACTAATGACCTACTTTTGGAACTCAAAATTCACAAGATCAACAACAAACCCTTGGATTATGAGGCTAATGCAAAAGATAATGATGCAGAGCAGATTAAGTTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

214

Amino Acids

24.46

Weight (kDa)

5.56

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54660
fragaria_vesca	FvH4_3g21680 FvH4_3g21680
malus_domestica	MD03G1213300.v1.1 MD11G1228200.v1.1
prunus_persica	Prupe.4G201100_v2.0.a1 Prupe.4G201100_v2.0.a1 Prupe.4G201100_v2.0.a1 Prupe.4G201100_v2.0.a1
pyrus_communis	pycom03g16190 pycom11g20080
rosa_chinensis	RchiOBHm_Chr5g0037161
rosa_laevigata	RLG00000033759
rosa_multiflora	Rmu_ssc0000448.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043820
rosa_rugosa	Rorug05G0161200 Rorug05G0161300
rosa_samantha	Rh5AG252900 Rh5BG254800 Rh5CG287400 Rh5DG263300
rosa_wichuraiana	Rw5G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	2 cut(s)	185, 561
AfeI	AGCGCT	1 cut(s)	259
AfiI	CCNNNNNNNGG	3 cut(s)	217, 329, 550
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	35, 287, 637
AjiI	CACGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	2 cut(s)	442, 474
AluBI	AGCT	3 cut(s)	31, 319, 493
AluI	AGCT	3 cut(s)	31, 319, 493
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	3 cut(s)	39, 114, 254
AlwI	GGATC	1 cut(s)	188
Aor51HI	AGCGCT	1 cut(s)	259
ApeKI	GCWGC	4 cut(s)	28, 397, 400, 403
ApoI	RAATTY	2 cut(s)	185, 561
AspLEI	GCGC	2 cut(s)	260, 437
BanII	GRGCYC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	4 cut(s)	40, 409, 412, 415
BciT130I	CCWGG	1 cut(s)	324
BcoDI	GTCTC	3 cut(s)	39, 114, 254
BfoI	RGCGCY	1 cut(s)	261
BisI	GCNGC	4 cut(s)	29, 398, 401, 404
BlsI	GCNGC	4 cut(s)	30, 399, 402, 405
Bme1390I	CCNGG	1 cut(s)	324
BmgBI	CACGTC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	4 cut(s)	164, 193, 493, 607
BpiI	GAAGAC	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpuEI	CTTGAG	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	585
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 329, 550
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	585
BseLI	CCNNNNNNNGG	3 cut(s)	217, 329, 550
BseMII	CTCAG	2 cut(s)	125, 265
BseRI	GAGGAG	2 cut(s)	415, 426
BseXI	GCAGC	4 cut(s)	40, 409, 412, 415
BsiHKAI	GWGCWC	1 cut(s)	495
BslI	CCNNNNNNNGG	3 cut(s)	217, 329, 550
BsmAI	GTCTC	3 cut(s)	39, 114, 254
BsmBI	CGTCTC	1 cut(s)	39
Bso31I	GGTCTC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	193, 292, 570
BspACI	CCGC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	124, 264
BspPI	GGATC	1 cut(s)	188
BspQI	GCTCTTC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	3 cut(s)	193, 292, 570
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	425
BstDEI	CTNAG	2 cut(s)	111, 251
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	260, 437
BstKTI	GATC	3 cut(s)	196, 295, 573
BstMAI	GTCTC	3 cut(s)	39, 114, 254
BstMBI	GATC	3 cut(s)	193, 292, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 403
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	322
BstV1I	GCAGC	4 cut(s)	40, 409, 412, 415
BstV2I	GAAGAC	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	212, 395
CfoI	GCGC	2 cut(s)	260, 437
CviAII	CATG	2 cut(s)	106, 470
CviJI	RGCY	7 cut(s)	5, 31, 319, 487, 493, 527, 599
CviKI_1	RGCY	7 cut(s)	5, 31, 319, 487, 493, 527, 599
DdeI	CTNAG	2 cut(s)	111, 251
DpnI	GATC	3 cut(s)	195, 294, 572
DpnII	GATC	3 cut(s)	193, 292, 570
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Ecl136II	GAGCTC	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	254
Eco32I	GATATC	1 cut(s)	235
Eco47III	AGCGCT	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	322
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	2 cut(s)	109, 473
FaiI	YATR	6 cut(s)	107, 303, 354, 471, 477, 594
FatI	CATG	2 cut(s)	105, 469
Fnu4HI	GCNGC	4 cut(s)	29, 398, 401, 404
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	4 cut(s)	29, 398, 401, 404
GlaI	GCGC	2 cut(s)	259, 436
GluI	GCNGC	4 cut(s)	29, 398, 401, 404
HaeII	RGCGCY	1 cut(s)	261
HhaI	GCGC	2 cut(s)	260, 437
Hin1II	CATG	2 cut(s)	109, 473
Hin6I	GCGC	2 cut(s)	258, 435
HinP1I	GCGC	2 cut(s)	258, 435
HinfI	GANTC	4 cut(s)	102, 227, 416, 509
Hpy188I	TCNGA	6 cut(s)	24, 98, 202, 232, 254, 483
Hpy188III	TCNNGA	2 cut(s)	136, 296
HpyAV	CCTTC	5 cut(s)	133, 207, 217, 323, 361
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	4 cut(s)	155, 506, 605, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 403
HpyF3I	CTNAG	2 cut(s)	111, 251
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	109, 473
HspAI	GCGC	2 cut(s)	258, 435
Kzo9I	GATC	3 cut(s)	193, 292, 570
LguI	GCTCTTC	1 cut(s)	425
LmnI	GCTCC	1 cut(s)	498
LpnPI	CCDG	7 cut(s)	98, 149, 231, 246, 309, 332, 336
Lsp1109I	GCAGC	4 cut(s)	40, 409, 412, 415
LweI	GCATC	4 cut(s)	164, 193, 493, 607
MaeII	ACGT	1 cut(s)	90
MalI	GATC	3 cut(s)	195, 294, 572
MboI	GATC	3 cut(s)	193, 292, 570
MboII	GAAGA	3 cut(s)	98, 111, 442
MhlI	GDGCHC	1 cut(s)	495
MluCI	AATT	4 cut(s)	185, 378, 457, 561
MlyI	GAGTC	2 cut(s)	236, 425
MmeI	TCCRAC	2 cut(s)	152, 444
MnlI	CCTC	5 cut(s)	404, 436, 477, 517, 589
MseI	TTAA	2 cut(s)	309, 630
MslI	CAYNNNNRTG	1 cut(s)	474
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	2 cut(s)	394, 403
NdeII	GATC	3 cut(s)	193, 292, 570
NlaIII	CATG	2 cut(s)	109, 473
PciSI	GCTCTTC	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	102, 509
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	4 cut(s)	30, 399, 402, 405
PleI	GAGTC	2 cut(s)	235, 424
PpsI	GAGTC	2 cut(s)	235, 424
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PsyI	GACNNNGTC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	309, 630
SatI	GCNGC	4 cut(s)	29, 398, 401, 404
Sau3AI	GATC	3 cut(s)	193, 292, 570
SchI	GAGTC	2 cut(s)	236, 425
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	495
SetI	ASST	8 cut(s)	33, 93, 144, 321, 351, 372, 495, 546
SfaNI	GCATC	4 cut(s)	164, 193, 493, 607
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	4 cut(s)	185, 378, 457, 561
SsiI	CCGC	1 cut(s)	59
SspI	AATATT	1 cut(s)	343
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	216
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	428
TasI	AATT	4 cut(s)	185, 378, 457, 561
TfiI	GAWTC	2 cut(s)	102, 509
Tru1I	TTAA	2 cut(s)	309, 630
Tru9I	TTAA	2 cut(s)	309, 630
TscAI	CASTG	2 cut(s)	219, 395
TseI	GCWGC	4 cut(s)	28, 397, 400, 403
TspDTI	ATGAA	1 cut(s)	94
TspRI	CASTG	2 cut(s)	219, 395
Tth111I	GACNNNGTC	1 cut(s)	302
XapI	RAATTY	2 cut(s)	185, 561
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.