Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009516

Physical Location & Seq

Genomic Coordinates Reverse (-)

22614056 .. 22616064

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g20080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGATTACTACTACTACTACTACTACTAGGAAGCAGCTCGAAGTCGTAAGAGACGATCAGACTCCGCAGAAATGGTGTGTTTTATTGAGAGAAGATGTGTTCAGAAGATTCATGGCTCAAGGCAGCACAAATCCAACGGTGCAGAAGGTCTTTGGTGGTGCATCTTTTTTCTGTCCTTTGCTGTTTGGGAAATTTTTTGATCCTTCTGATGCCTTCCCGCTGTGGGAGTTTGAGTCGGATATCTTGCTGTCTGGTCTCAGAAGCTCTGGCCAAACCTGTATTGATTGGTTTCAAACAGATCAAGACTATGTCCTAAAAGTAGAACTACCAGGAGAAGGGAAAAACAATGTTCAAGTGTATGCTGAAAATGGAAAAGTGGTGGAAATAGGTGGGCAGTGGAAGCAGCAGCAAGGAGGAGAGTCCAACTCCTTGAAGAGCACAAAGGATTGGAGAAGTGGGAATTGGTGGGAACATGGTTATGTTCGGAGGCTTGAGCTCCCACAAGATGCTGATTCCAGAAGGATAGAGGCTTCTCTCACTAATGACCTACTTTTGGAACTCAAAGTTCACAAGATCAACAAACCCTTGGATTCTAATGACAATGCAAAAGATAAAGATCCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

209

Amino Acids

23.81

Weight (kDa)

5.33

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54660
fragaria_vesca	FvH4_3g21680 FvH4_3g21680
malus_domestica	MD03G1213300.v1.1 MD11G1228200.v1.1
prunus_persica	Prupe.4G201100_v2.0.a1 Prupe.4G201100_v2.0.a1 Prupe.4G201100_v2.0.a1 Prupe.4G201100_v2.0.a1
pyrus_communis	pycom03g16190 pycom11g20080
rosa_chinensis	RchiOBHm_Chr5g0037161
rosa_laevigata	RLG00000033759
rosa_multiflora	Rmu_ssc0000448.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043820
rosa_rugosa	Rorug05G0161200 Rorug05G0161300
rosa_samantha	Rh5AG252900 Rh5BG254800 Rh5CG287400 Rh5DG263300
rosa_wichuraiana	Rw5G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 218
AclWI	GGATC	2 cut(s)	194, 611
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	223, 335, 553
AgsI	TTSAA	3 cut(s)	293, 353, 433
AjnI	CCWGG	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	445, 477
AluBI	AGCT	3 cut(s)	37, 264, 496
AluI	AGCT	3 cut(s)	37, 264, 496
Alw21I	GWGCWC	2 cut(s)	440, 498
Alw26I	GTCTC	2 cut(s)	45, 260
AlwI	GGATC	2 cut(s)	194, 611
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	4 cut(s)	34, 123, 403, 406
ApoI	RAATTY	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	498
Bbv12I	GWGCWC	2 cut(s)	440, 498
BbvI	GCAGC	4 cut(s)	46, 135, 415, 418
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	45, 260
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	4 cut(s)	35, 124, 404, 407
BlsI	GCNGC	4 cut(s)	36, 125, 405, 408
Bme1390I	CCNGG	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	3 cut(s)	170, 199, 496
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpuEI	CTTGAG	2 cut(s)	102, 512
BsaBI	GATNNNNATC	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	585
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 335, 553
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	585
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	3 cut(s)	223, 335, 553
BseMII	CTCAG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	4 cut(s)	46, 135, 415, 418
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	270
BsiHKAI	GWGCWC	2 cut(s)	440, 498
BslI	CCNNNNNNNGG	3 cut(s)	223, 335, 553
BsmAI	GTCTC	2 cut(s)	45, 260
BsmBI	CGTCTC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	440, 498
Bsp143I	GATC	5 cut(s)	55, 199, 298, 573, 616
BspACI	CCGC	2 cut(s)	65, 218
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	270
BspPI	GGATC	2 cut(s)	194, 611
BspQI	GCTCTTC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	5 cut(s)	55, 199, 298, 573, 616
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	257
BstKTI	GATC	5 cut(s)	58, 202, 301, 576, 619
BstMAI	GTCTC	2 cut(s)	45, 260
BstMBI	GATC	5 cut(s)	55, 199, 298, 573, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstV1I	GCAGC	4 cut(s)	46, 135, 415, 418
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	401
CviAII	CATG	2 cut(s)	112, 473
CviJI	RGCY	7 cut(s)	37, 116, 264, 270, 490, 496, 530
CviKI_1	RGCY	7 cut(s)	37, 116, 264, 270, 490, 496, 530
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	5 cut(s)	57, 201, 300, 575, 618
DpnII	GATC	5 cut(s)	55, 199, 298, 573, 616
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	498
Eco31I	GGTCTC	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	496
EcoICRI	GAGCTC	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	328
EcoRV	GATATC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	2 cut(s)	115, 476
FaiI	YATR	5 cut(s)	113, 309, 360, 474, 480
FatI	CATG	2 cut(s)	111, 472
FauI	CCCGC	1 cut(s)	225
Fnu4HI	GCNGC	4 cut(s)	35, 124, 404, 407
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	4 cut(s)	35, 124, 404, 407
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	4 cut(s)	35, 124, 404, 407
HaeIII	GGCC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	115, 476
HinfI	GANTC	6 cut(s)	61, 108, 233, 419, 512, 590
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	6 cut(s)	60, 104, 208, 238, 260, 486
Hpy188III	TCNNGA	2 cut(s)	302, 516
Hpy8I	GTNNAC	1 cut(s)	568
HpyAV	CCTTC	5 cut(s)	139, 213, 223, 329, 513
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	142, 161, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	1 cut(s)	257
Hsp92II	CATG	2 cut(s)	115, 476
Kzo9I	GATC	5 cut(s)	55, 199, 298, 573, 616
LguI	GCTCTTC	1 cut(s)	428
LmnI	GCTCC	1 cut(s)	501
LpnPI	CCDG	6 cut(s)	237, 252, 289, 315, 342, 529
Lsp1109I	GCAGC	4 cut(s)	46, 135, 415, 418
LweI	GCATC	3 cut(s)	170, 199, 496
MaeI	CTAG	1 cut(s)	27
MalI	GATC	5 cut(s)	57, 201, 300, 575, 618
MboI	GATC	5 cut(s)	55, 199, 298, 573, 616
MboII	GAAGA	3 cut(s)	104, 117, 445
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	2 cut(s)	440, 498
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	2 cut(s)	191, 460
MluNI	TGGCCA	1 cut(s)	270
MlyI	GAGTC	3 cut(s)	55, 242, 428
MmeI	TCCRAC	3 cut(s)	158, 216, 447
MnlI	CCTC	3 cut(s)	407, 480, 520
Mox20I	TGGCCA	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	477
Msp20I	TGGCCA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	400
NdeII	GATC	5 cut(s)	55, 199, 298, 573, 616
NlaIII	CATG	2 cut(s)	115, 476
PciSI	GCTCTTC	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	3 cut(s)	108, 512, 590
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	4 cut(s)	36, 125, 405, 408
PleI	GAGTC	3 cut(s)	55, 241, 427
PpsI	GAGTC	3 cut(s)	55, 241, 427
Psp124BI	GAGCTC	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	616
PsyI	GACNNNGTC	1 cut(s)	308
RseI	CAYNNNNRTG	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	428
SatI	GCNGC	4 cut(s)	35, 124, 404, 407
Sau3AI	GATC	5 cut(s)	55, 199, 298, 573, 616
SchI	GAGTC	3 cut(s)	55, 242, 428
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	2 cut(s)	440, 498
SetI	ASST	7 cut(s)	39, 150, 266, 278, 391, 498, 549
SfaNI	GCATC	3 cut(s)	170, 199, 496
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	2 cut(s)	117, 491
SmoI	CTYRAG	2 cut(s)	117, 491
Sse9I	AATT	2 cut(s)	191, 460
SsiI	CCGC	2 cut(s)	65, 218
SspMI	CTAG	1 cut(s)	27
SstI	GAGCTC	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	39
TasI	AATT	2 cut(s)	191, 460
TfiI	GAWTC	3 cut(s)	108, 512, 590
TscAI	CASTG	1 cut(s)	401
TseI	GCWGC	4 cut(s)	34, 123, 403, 406
TspDTI	ATGAA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	401
Tth111I	GACNNNGTC	1 cut(s)	308
XapI	RAATTY	1 cut(s)	191
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.