DNA repair endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G41150 AT5G41150 |
| fragaria_vesca | FvH4_5g20470 |
| malus_domestica | MD06G1046600.v1.1 |
| prunus_persica | Prupe.5G054900_v2.0.a1 Prupe.5G054900_v2.0.a1 |
| pyrus_communis | pycom06g03930 |
| rosa_chinensis | RchiOBHm_Chr7g0205791 |
| rosa_laevigata | RLG00000003354 |
| rosa_multiflora | Rmu_sc0001336.1_g000030 |
| rosa_roxburghii | Rroxscaffold_3G00251980 |
| rosa_rugosa | Rorug07G0093100 |
| rosa_samantha | Rh7AG224600 Rh7BG219800 Rh7CG238300 Rh7DG231300 |
| rosa_wichuraiana | Rw7G019370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 995 |
| Acc36I | ACCTGC | 1 cut(s) | 2413 |
| AccB1I | GGYRCC | 3 cut(s) | 140, 607, 1144 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 472 |
| AccBSI | CCGCTC | 1 cut(s) | 420 |
| AccII | CGCG | 2 cut(s) | 447, 449 |
| AccIII | TCCGGA | 1 cut(s) | 586 |
| AciI | CCGC | 9 cut(s) | 60, 161, 418, 435, 866, 1336, 1540, 1656, 2390 |
| AclWI | GGATC | 5 cut(s) | 419, 764, 777, 1565, 1736 |
| AcoI | YGGCCR | 1 cut(s) | 539 |
| AcsI | RAATTY | 2 cut(s) | 2335, 2654 |
| AcuI | CTGAAG | 3 cut(s) | 1073, 1665, 1674 |
| AcyI | GRCGYC | 1 cut(s) | 992 |
| AdeI | CACNNNGTG | 2 cut(s) | 628, 2608 |
| AfaI | GTAC | 4 cut(s) | 518, 884, 1105, 2874 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 53, 137, 472, 1327, 1589, 1754, 3036 |
| AflII | CTTAAG | 1 cut(s) | 2822 |
| AjiI | CACGTC | 1 cut(s) | 1601 |
| AjnI | CCWGG | 2 cut(s) | 1956, 2325 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 266, 298 |
| AleI | CACNNNNGTG | 2 cut(s) | 1150, 2055 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1602, 1634 |
| Alw21I | GWGCWC | 3 cut(s) | 21, 2052, 2062 |
| Alw26I | GTCTC | 5 cut(s) | 79, 2089, 2787, 2941, 3078 |
| Alw44I | GTGCAC | 1 cut(s) | 2048 |
| AlwI | GGATC | 5 cut(s) | 419, 764, 777, 1565, 1736 |
| Aor13HI | TCCGGA | 1 cut(s) | 586 |
| AoxI | GGCC | 6 cut(s) | 82, 349, 539, 1318, 1801, 2982 |
| ApaI | GGGCCC | 1 cut(s) | 1805 |
| ApaLI | GTGCAC | 1 cut(s) | 2048 |
| ApoI | RAATTY | 2 cut(s) | 2335, 2654 |
| AspLEI | GCGC | 1 cut(s) | 449 |
| AspS9I | GGNCC | 5 cut(s) | 4, 1319, 1801, 1802, 2982 |
| AsuC2I | CCSGG | 2 cut(s) | 2764, 2958 |
| AsuHPI | GGTGA | 6 cut(s) | 280, 310, 1973, 2594, 2714, 2974 |
| AsuII | TTCGAA | 2 cut(s) | 1031, 2972 |
| AsuNHI | GCTAGC | 2 cut(s) | 1649, 3040 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| AxyI | CCTNAGG | 1 cut(s) | 79 |
| BaeGI | GKGCMC | 3 cut(s) | 143, 1805, 2052 |
| BamHI | GGATCC | 1 cut(s) | 769 |
| BanI | GGYRCC | 3 cut(s) | 140, 607, 1144 |
| BanII | GRGCYC | 1 cut(s) | 1805 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 500, 532 |
| BauI | CACGAG | 1 cut(s) | 14 |
| BbsI | GAAGAC | 5 cut(s) | 271, 692, 714, 803, 830 |
| Bbv12I | GWGCWC | 3 cut(s) | 21, 2052, 2062 |
| BbvCI | CCTCAGC | 1 cut(s) | 1575 |
| BccI | CCATC | 6 cut(s) | 255, 1433, 2127, 2309, 2879, 3046 |
| BceAI | ACGGC | 1 cut(s) | 70 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 286, 320 |
| BciT130I | CCWGG | 2 cut(s) | 1958, 2327 |
| BciVI | GTATCC | 4 cut(s) | 883, 2029, 2570, 3114 |
| BclI | TGATCA | 2 cut(s) | 2274, 2308 |
| BcnI | CCSGG | 2 cut(s) | 2764, 2958 |
| BcoDI | GTCTC | 5 cut(s) | 79, 2089, 2787, 2941, 3078 |
| BfaI | CTAG | 8 cut(s) | 1262, 1436, 1479, 1650, 1941, 2063, 2345, 3041 |
| BfmI | CTRYAG | 3 cut(s) | 1518, 1968, 2629 |
| BfrI | CTTAAG | 1 cut(s) | 2822 |
| BfuAI | ACCTGC | 1 cut(s) | 2413 |
| BfuI | GTATCC | 4 cut(s) | 883, 2029, 2570, 3114 |
| BglII | AGATCT | 1 cut(s) | 2566 |
| BlpI | GCTNAGC | 1 cut(s) | 2031 |
| BmcAI | AGTACT | 1 cut(s) | 884 |
| Bme1390I | CCNGG | 4 cut(s) | 1958, 2327, 2764, 2958 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgBI | CACGTC | 1 cut(s) | 1601 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 1319, 1801, 1802, 2982 |
| BmiI | GGNNCC | 6 cut(s) | 142, 609, 771, 1146, 1620, 1803 |
| BmrFI | CCNGG | 4 cut(s) | 1958, 2327, 2764, 2958 |
| BmsI | GCATC | 7 cut(s) | 306, 519, 652, 853, 1495, 1546, 3085 |
| BmtI | GCTAGC | 2 cut(s) | 1653, 3044 |
| BpiI | GAAGAC | 5 cut(s) | 271, 692, 714, 803, 830 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 568, 600, 2156, 2188 |
| BpmI | CTGGAG | 1 cut(s) | 2019 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1575 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2031 |
| Bpu14I | TTCGAA | 2 cut(s) | 1031, 2972 |
| BpuEI | CTTGAG | 1 cut(s) | 2965 |
| BpuMI | CCSGG | 2 cut(s) | 2764, 2958 |
| Bsa29I | ATCGAT | 1 cut(s) | 982 |
| BsaAI | YACGTR | 1 cut(s) | 1166 |
| BsaHI | GRCGYC | 1 cut(s) | 992 |
| BsaI | GGTCTC | 2 cut(s) | 2089, 2787 |
| BsaWI | WCCGGW | 2 cut(s) | 586, 2044 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 53, 137, 472, 1327, 1589, 1754, 3036 |
| Bse118I | RCCGGY | 1 cut(s) | 347 |
| Bse1I | ACTGG | 3 cut(s) | 1101, 2002, 2303 |
| Bse21I | CCTNAGG | 1 cut(s) | 79 |
| Bse3DI | GCAATG | 1 cut(s) | 2865 |
| BseAI | TCCGGA | 1 cut(s) | 586 |
| BseBI | CCWGG | 2 cut(s) | 1958, 2327 |
| BseCI | ATCGAT | 1 cut(s) | 982 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 53, 137, 472, 1327, 1589, 1754, 3036 |
| BseMI | GCAATG | 1 cut(s) | 2865 |
| BseNI | ACTGG | 3 cut(s) | 1101, 2002, 2303 |
| BseSI | GKGCMC | 3 cut(s) | 143, 1805, 2052 |
| BseYI | CCCAGC | 2 cut(s) | 1360, 1804 |
| Bsh1236I | CGCG | 2 cut(s) | 447, 449 |
| Bsh1285I | CGRYCG | 1 cut(s) | 920 |
| BshFI | GGCC | 6 cut(s) | 84, 351, 541, 1320, 1803, 2984 |
| BshNI | GGYRCC | 3 cut(s) | 140, 607, 1144 |
| BshVI | ATCGAT | 1 cut(s) | 982 |
| BsiEI | CGRYCG | 1 cut(s) | 920 |
| BsiHKAI | GWGCWC | 3 cut(s) | 21, 2052, 2062 |
| BsiSI | CCGG | 5 cut(s) | 348, 587, 2045, 2764, 2957 |
| BslFI | GGGAC | 1 cut(s) | 593 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 53, 137, 472, 1327, 1589, 1754, 3036 |
| BsmAI | GTCTC | 5 cut(s) | 79, 2089, 2787, 2941, 3078 |
| BsmBI | CGTCTC | 1 cut(s) | 2941 |
| BsmFI | GGGAC | 1 cut(s) | 593 |
| BsmI | GAATGC | 4 cut(s) | 633, 1474, 1645, 2260 |
| BsnI | GGCC | 6 cut(s) | 84, 351, 541, 1320, 1803, 2984 |
| Bso31I | GGTCTC | 2 cut(s) | 2089, 2787 |
| Bsp119I | TTCGAA | 2 cut(s) | 1031, 2972 |
| Bsp120I | GGGCCC | 1 cut(s) | 1801 |
| Bsp1286I | GDGCHC | 5 cut(s) | 21, 143, 1805, 2052, 2062 |
| Bsp13I | TCCGGA | 1 cut(s) | 586 |
| Bsp1407I | TGTACA | 1 cut(s) | 516 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2031 |
| Bsp19I | CCATGG | 2 cut(s) | 471, 2934 |
| BspACI | CCGC | 9 cut(s) | 60, 161, 418, 435, 866, 1336, 1540, 1656, 2390 |
| BspANI | GGCC | 6 cut(s) | 84, 351, 541, 1320, 1803, 2984 |
| BspDI | ATCGAT | 1 cut(s) | 982 |
| BspEI | TCCGGA | 1 cut(s) | 586 |
| BspFNI | CGCG | 2 cut(s) | 447, 449 |
| BspHI | TCATGA | 1 cut(s) | 2448 |
| BspLI | GGNNCC | 6 cut(s) | 142, 609, 771, 1146, 1620, 1803 |
| BspMAI | CTGCAG | 1 cut(s) | 1522 |
| BspMI | ACCTGC | 1 cut(s) | 2413 |
| BspOI | GCTAGC | 2 cut(s) | 1653, 3044 |
| BspPI | GGATC | 5 cut(s) | 419, 764, 777, 1565, 1736 |
| BspT104I | TTCGAA | 2 cut(s) | 1031, 2972 |
| BspT107I | GGYRCC | 3 cut(s) | 140, 607, 1144 |
| BspTI | CTTAAG | 1 cut(s) | 2822 |
| BspTNI | GGTCTC | 2 cut(s) | 2089, 2787 |
| BsrBI | CCGCTC | 1 cut(s) | 420 |
| BsrDI | GCAATG | 1 cut(s) | 2865 |
| BsrFI | RCCGGY | 1 cut(s) | 347 |
| BsrGI | TGTACA | 1 cut(s) | 516 |
| BsrI | ACTGG | 3 cut(s) | 1101, 2002, 2303 |
| BssAI | RCCGGY | 1 cut(s) | 347 |
| BssNI | GRCGYC | 1 cut(s) | 992 |
| BssSI | CACGAG | 1 cut(s) | 14 |
| BssT1I | CCWWGG | 4 cut(s) | 471, 489, 786, 2934 |
| Bst2BI | CACGAG | 1 cut(s) | 14 |
| Bst2UI | CCWGG | 2 cut(s) | 1958, 2327 |
| Bst4CI | ACNGT | 5 cut(s) | 367, 718, 1395, 1969, 2017 |
| Bst6I | CTCTTC | 3 cut(s) | 1173, 1182, 1755 |
| BstACI | GRCGYC | 1 cut(s) | 992 |
| BstAFI | CTTAAG | 1 cut(s) | 2822 |
| BstAUI | TGTACA | 1 cut(s) | 516 |
| BstBAI | YACGTR | 1 cut(s) | 1166 |
| BstBI | TTCGAA | 2 cut(s) | 1031, 2972 |
| BstDSI | CCRYGG | 3 cut(s) | 471, 2934, 3030 |
| BstFNI | CGCG | 2 cut(s) | 447, 449 |
| BstHHI | GCGC | 1 cut(s) | 449 |
| BstMAI | GTCTC | 5 cut(s) | 79, 2089, 2787, 2941, 3078 |
| BstMCI | CGRYCG | 1 cut(s) | 920 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 538, 1384, 1514, 1523, 2743, 3017 |
| BstNI | CCWGG | 2 cut(s) | 1958, 2327 |
| BstNSI | RCATGY | 5 cut(s) | 1272, 1294, 1956, 2488, 2798 |
| BstSCI | CCNGG | 4 cut(s) | 1956, 2325, 2762, 2956 |
| BstSFI | CTRYAG | 3 cut(s) | 1518, 1968, 2629 |
| BstSLI | GKGCMC | 3 cut(s) | 143, 1805, 2052 |
| BstUI | CGCG | 2 cut(s) | 447, 449 |
| BstV2I | GAAGAC | 5 cut(s) | 271, 692, 714, 803, 830 |
| BstX2I | RGATCY | 3 cut(s) | 411, 769, 2566 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 625 |
| BstYI | RGATCY | 3 cut(s) | 411, 769, 2566 |
| Bsu15I | ATCGAT | 1 cut(s) | 982 |
| Bsu36I | CCTNAGG | 1 cut(s) | 79 |
| BsuI | GTATCC | 4 cut(s) | 883, 2029, 2570, 3114 |
| BsuRI | GGCC | 6 cut(s) | 84, 351, 541, 1320, 1803, 2984 |
| BsuTUI | ATCGAT | 1 cut(s) | 982 |
| BtgI | CCRYGG | 3 cut(s) | 471, 2934, 3030 |
| BtgZI | GCGATG | 1 cut(s) | 233 |
| BtrI | CACGTC | 1 cut(s) | 1601 |
| BtsIMutI | CAGTG | 4 cut(s) | 378, 390, 1965, 2288 |
| BveI | ACCTGC | 1 cut(s) | 2413 |
| CciI | TCATGA | 1 cut(s) | 2448 |
| CfoI | GCGC | 1 cut(s) | 449 |
| Cfr10I | RCCGGY | 1 cut(s) | 347 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 1319, 1801, 1802, 2982 |
| ClaI | ATCGAT | 1 cut(s) | 982 |
| CseI | GACGC | 2 cut(s) | 590, 1683 |
| Csp6I | GTAC | 4 cut(s) | 517, 883, 1104, 2873 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1747, 1782 |
| CviQI | GTAC | 4 cut(s) | 517, 883, 1104, 2873 |
| DraI | TTTAAA | 2 cut(s) | 1399, 1626 |
| DraIII | CACNNNGTG | 2 cut(s) | 628, 2608 |
| EaeI | YGGCCR | 1 cut(s) | 539 |
| Eam1104I | CTCTTC | 3 cut(s) | 1173, 1182, 1755 |
| EarI | CTCTTC | 3 cut(s) | 1173, 1182, 1755 |
| Eco130I | CCWWGG | 4 cut(s) | 471, 489, 786, 2934 |
| Eco147I | AGGCCT | 1 cut(s) | 84 |
| Eco24I | GRGCYC | 1 cut(s) | 1805 |
| Eco31I | GGTCTC | 2 cut(s) | 2089, 2787 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco57I | CTGAAG | 3 cut(s) | 1073, 1665, 1674 |
| Eco81I | CCTNAGG | 1 cut(s) | 79 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1801 |
| EcoRI | GAATTC | 1 cut(s) | 2335 |
| EcoRII | CCWGG | 2 cut(s) | 1956, 2325 |
| EcoT14I | CCWWGG | 4 cut(s) | 471, 489, 786, 2934 |
| EcoT22I | ATGCAT | 1 cut(s) | 1292 |
| EcoT38I | GRGCYC | 1 cut(s) | 1805 |
| ErhI | CCWWGG | 4 cut(s) | 471, 489, 786, 2934 |
| Esp3I | CGTCTC | 1 cut(s) | 2941 |
| FaqI | GGGAC | 1 cut(s) | 593 |
| FauI | CCCGC | 3 cut(s) | 1329, 1533, 2383 |
| FbaI | TGATCA | 2 cut(s) | 2274, 2308 |
| FriOI | GRGCYC | 1 cut(s) | 1805 |
| FspBI | CTAG | 8 cut(s) | 1262, 1436, 1479, 1650, 1941, 2063, 2345, 3041 |
| GlaI | GCGC | 1 cut(s) | 448 |
| GsaI | CCCAGC | 2 cut(s) | 1364, 1808 |
| GsuI | CTGGAG | 1 cut(s) | 2019 |
| HaeIII | GGCC | 6 cut(s) | 84, 351, 541, 1320, 1803, 2984 |
| HapII | CCGG | 5 cut(s) | 348, 587, 2045, 2764, 2957 |
| HgaI | GACGC | 2 cut(s) | 590, 1683 |
| HhaI | GCGC | 1 cut(s) | 449 |
| Hin1I | GRCGYC | 1 cut(s) | 992 |
| Hin6I | GCGC | 1 cut(s) | 447 |
| HinP1I | GCGC | 1 cut(s) | 447 |
| HincII | GTYRAC | 2 cut(s) | 310, 2075 |
| HindII | GTYRAC | 2 cut(s) | 310, 2075 |
| HindIII | AAGCTT | 2 cut(s) | 1871, 2671 |
| HinfI | GANTC | 9 cut(s) | 938, 1432, 1886, 1937, 2009, 2210, 2267, 2772, 2969 |
| HpaII | CCGG | 5 cut(s) | 348, 587, 2045, 2764, 2957 |
| HphI | GGTGA | 6 cut(s) | 280, 310, 1973, 2594, 2714, 2974 |
| Hpy166II | GTNNAC | 6 cut(s) | 310, 2050, 2075, 2116, 2434, 2873 |
| Hpy8I | GTNNAC | 6 cut(s) | 310, 2050, 2075, 2116, 2434, 2873 |
| Hpy99I | CGWCG | 1 cut(s) | 44 |
| HpyCH4III | ACNGT | 5 cut(s) | 367, 718, 1395, 1969, 2017 |
| HpyCH4IV | ACGT | 5 cut(s) | 992, 1165, 1600, 2504, 2927 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 538, 1384, 1514, 1523, 2743, 3017 |
| HpySE526I | ACGT | 5 cut(s) | 992, 1165, 1600, 2504, 2927 |
| Hsp92I | GRCGYC | 1 cut(s) | 992 |
| HspAI | GCGC | 1 cut(s) | 447 |
| Kpn2I | TCCGGA | 1 cut(s) | 586 |
| KroI | GCCGGC | 1 cut(s) | 347 |
| KroNI | GCCGGC | 1 cut(s) | 349 |
| Ksp22I | TGATCA | 2 cut(s) | 2274, 2308 |
| LmnI | GCTCC | 2 cut(s) | 589, 1072 |
| LweI | GCATC | 7 cut(s) | 306, 519, 652, 853, 1495, 1546, 3085 |
| MaeI | CTAG | 8 cut(s) | 1262, 1436, 1479, 1650, 1941, 2063, 2345, 3041 |
| MaeII | ACGT | 5 cut(s) | 992, 1165, 1600, 2504, 2927 |
| MbiI | CCGCTC | 1 cut(s) | 420 |
| MfeI | CAATTG | 1 cut(s) | 764 |
| MflI | RGATCY | 3 cut(s) | 411, 769, 2566 |
| MhlI | GDGCHC | 5 cut(s) | 21, 143, 1805, 2052, 2062 |
| MlyI | GAGTC | 1 cut(s) | 947 |
| MmeI | TCCRAC | 5 cut(s) | 552, 885, 1543, 1714, 2487 |
| Mph1103I | ATGCAT | 1 cut(s) | 1292 |
| MroI | TCCGGA | 1 cut(s) | 586 |
| MroNI | GCCGGC | 1 cut(s) | 347 |
| MseI | TTAA | 5 cut(s) | 735, 1398, 1625, 1815, 2823 |
| MslI | CAYNNNNRTG | 4 cut(s) | 555, 1150, 2055, 2539 |
| MspA1I | CMGCKG | 4 cut(s) | 60, 1523, 1656, 1934 |
| MspCI | CTTAAG | 1 cut(s) | 2822 |
| MspI | CCGG | 5 cut(s) | 348, 587, 2045, 2764, 2957 |
| MspR9I | CCNGG | 4 cut(s) | 1958, 2327, 2764, 2958 |
| MunI | CAATTG | 1 cut(s) | 764 |
| Mva1269I | GAATGC | 4 cut(s) | 633, 1474, 1645, 2260 |
| MvaI | CCWGG | 2 cut(s) | 1958, 2327 |
| MvnI | CGCG | 2 cut(s) | 447, 449 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 538, 1384, 1514, 1523, 2743, 3017 |
| NaeI | GCCGGC | 1 cut(s) | 349 |
| NciI | CCSGG | 2 cut(s) | 2764, 2958 |
| NcoI | CCATGG | 2 cut(s) | 471, 2934 |
| NgoMIV | GCCGGC | 1 cut(s) | 347 |
| NheI | GCTAGC | 2 cut(s) | 1649, 3040 |
| NlaIV | GGNNCC | 6 cut(s) | 142, 609, 771, 1146, 1620, 1803 |
| NmeAIII | GCCGAG | 2 cut(s) | 567, 2188 |
| NmuCI | GTSAC | 8 cut(s) | 988, 1379, 1927, 1961, 2286, 2500, 2710, 2962 |
| NsiI | ATGCAT | 1 cut(s) | 1292 |
| NspI | RCATGY | 5 cut(s) | 1272, 1294, 1956, 2488, 2798 |
| NspV | TTCGAA | 2 cut(s) | 1031, 2972 |
| OliI | CACNNNNGTG | 2 cut(s) | 1150, 2055 |
| PaeI | GCATGC | 4 cut(s) | 1272, 1294, 2488, 2798 |
| PagI | TCATGA | 1 cut(s) | 2448 |
| PceI | AGGCCT | 1 cut(s) | 84 |
| PctI | GAATGC | 4 cut(s) | 633, 1474, 1645, 2260 |
| PdiI | GCCGGC | 1 cut(s) | 349 |
| PfeI | GAWTC | 8 cut(s) | 1432, 1886, 1937, 2009, 2210, 2267, 2772, 2969 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 472 |
| Ple19I | CGATCG | 1 cut(s) | 920 |
| PleI | GAGTC | 1 cut(s) | 946 |
| PpsI | GAGTC | 1 cut(s) | 946 |
| Ppu21I | YACGTR | 1 cut(s) | 1166 |
| Psp6I | CCWGG | 2 cut(s) | 1956, 2325 |
| PspFI | CCCAGC | 2 cut(s) | 1360, 1804 |
| PspGI | CCWGG | 2 cut(s) | 1956, 2325 |
| PspN4I | GGNNCC | 6 cut(s) | 142, 609, 771, 1146, 1620, 1803 |
| PspOMI | GGGCCC | 1 cut(s) | 1801 |
| PspPI | GGNCC | 5 cut(s) | 4, 1319, 1801, 1802, 2982 |
| PstI | CTGCAG | 1 cut(s) | 1522 |
| PsuI | RGATCY | 3 cut(s) | 411, 769, 2566 |
| PvuI | CGATCG | 1 cut(s) | 920 |
| PvuII | CAGCTG | 2 cut(s) | 1523, 1934 |
| RsaI | GTAC | 4 cut(s) | 518, 884, 1105, 2874 |
| RsaNI | GTAC | 4 cut(s) | 517, 883, 1104, 2873 |
| RseI | CAYNNNNRTG | 4 cut(s) | 555, 1150, 2055, 2539 |
| SaqAI | TTAA | 5 cut(s) | 735, 1398, 1625, 1815, 2823 |
| Sau96I | GGNCC | 5 cut(s) | 4, 1319, 1801, 1802, 2982 |
| ScaI | AGTACT | 1 cut(s) | 884 |
| SchI | GAGTC | 1 cut(s) | 947 |
| ScrFI | CCNGG | 4 cut(s) | 1958, 2327, 2764, 2958 |
| SduI | GDGCHC | 5 cut(s) | 21, 143, 1805, 2052, 2062 |
| SfaNI | GCATC | 7 cut(s) | 306, 519, 652, 853, 1495, 1546, 3085 |
| SfcI | CTRYAG | 3 cut(s) | 1518, 1968, 2629 |
| SfuI | TTCGAA | 2 cut(s) | 1031, 2972 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 555, 1150, 2055, 2539 |
| SmlI | CTYRAG | 2 cut(s) | 2822, 2944 |
| SmoI | CTYRAG | 2 cut(s) | 2822, 2944 |
| SphI | GCATGC | 4 cut(s) | 1272, 1294, 2488, 2798 |
| SseBI | AGGCCT | 1 cut(s) | 84 |
| SsiI | CCGC | 9 cut(s) | 60, 161, 418, 435, 866, 1336, 1540, 1656, 2390 |
| SspI | AATATT | 2 cut(s) | 1863, 2811 |
| SspMI | CTAG | 8 cut(s) | 1262, 1436, 1479, 1650, 1941, 2063, 2345, 3041 |
| StuI | AGGCCT | 1 cut(s) | 84 |
| StyD4I | CCNGG | 4 cut(s) | 1956, 2325, 2762, 2956 |
| StyI | CCWWGG | 4 cut(s) | 471, 489, 786, 2934 |
| TaaI | ACNGT | 5 cut(s) | 367, 718, 1395, 1969, 2017 |
| TaiI | ACGT | 5 cut(s) | 995, 1168, 1603, 2507, 2930 |
| TaqI | TCGA | 8 cut(s) | 39, 898, 916, 941, 982, 1031, 1097, 2972 |
| TaqII | GACCGA | 1 cut(s) | 910 |
| TatI | WGTACW | 3 cut(s) | 516, 882, 1103 |
| TfiI | GAWTC | 8 cut(s) | 1432, 1886, 1937, 2009, 2210, 2267, 2772, 2969 |
| Tru1I | TTAA | 5 cut(s) | 735, 1398, 1625, 1815, 2823 |
| Tru9I | TTAA | 5 cut(s) | 735, 1398, 1625, 1815, 2823 |
| TscAI | CASTG | 4 cut(s) | 385, 397, 1972, 2295 |
| TseFI | GTSAC | 8 cut(s) | 988, 1379, 1927, 1961, 2286, 2500, 2710, 2962 |
| Tsp45I | GTSAC | 8 cut(s) | 988, 1379, 1927, 1961, 2286, 2500, 2710, 2962 |
| TspGWI | ACGGA | 2 cut(s) | 2981, 3009 |
| TspRI | CASTG | 4 cut(s) | 385, 397, 1972, 2295 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 472 |
| Vha464I | CTTAAG | 1 cut(s) | 2822 |
| VneI | GTGCAC | 1 cut(s) | 2048 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XapI | RAATTY | 2 cut(s) | 2335, 2654 |
| XbaI | TCTAGA | 2 cut(s) | 1435, 2062 |
| XceI | RCATGY | 5 cut(s) | 1272, 1294, 1956, 2488, 2798 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 625 |
| XspI | CTAG | 8 cut(s) | 1262, 1436, 1479, 1650, 1941, 2063, 2345, 3041 |
| ZraI | GACGTC | 1 cut(s) | 993 |
| ZrmI | AGTACT | 1 cut(s) | 884 |
| Zsp2I | ATGCAT | 1 cut(s) | 1292 |