Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014005

Physical Location & Seq

Genomic Coordinates Reverse (-)

22894478 .. 22899261

Gene Structure 4784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG231300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2730 bp

ATGGTCCAATTCCACGAGCACATAATCGCCGACCTGCTCGACGCGCCGCCTAACGGCACCGGCCTCGTGATCCTCTCCTCCGGCCTCTCCCTCCCCAAACTCATCTCCTCCCTTCTCCTCCTCCACACTCCTTCTCAGGGCACCCTCCTCATCCTCTCTCCCCACAACCCCTCCTCCTTCAAATCCCAACTCCTCCACCACTTCCACCCCAACCCCATCCCCGAAATCACCGCCGACCTCCCCGCCACCCACCGCAACTCCCTCTACTCCTCCGGCAACCCCTTCTTCATCACCCCCCGCATCCTCATCGTCGATCTCCTCACCTCCCGAATCCCGACCTCTCAGATCGCCGGACTCGTCATCCCCGCCGTCCATTCCCTCTCCGAGACCTCCACCGAGGCCTTCATCGTCAGGATCTTCCGGTCGCTCAACAAGACGGCGTTCGTCCGCGCGTTTTCCGATAAGCCGCACGCGATGGTCTCCGGTTTTGCGAAGACGGAGAGGACGATGAAGTGTTTGTATATGAGGAGATTGCATCTCTGGCCGAGGTTCCACGTGGAGGTTTCGAATGAGCTGGAGAGGGACGCGCCGGAGGTGGTGGATATTAGGGTTCCGATGACGAAATACATGGTGGGGATTCAGAAGGCGATTATTGAGGTCATGGATGCTTGCTTGAAGGAGATGAGGAAGACGAACAAGGTCGATGTGGAGGACTTGACTGTCGAAAACGGGCTGTTTAAGTCGTTTGATGAGATTGTGAGGAGGCAGTTGGATCCGATTTGGCATACATTGGGGAAGAAGACCAAGCAGCTTGTCTCTGACTTGAAGACTCTCAGGAAGCTCTTGGATTACCTTGTTAGATATGATGCGGTAACTTATTTGAAGTACTTGGATACACTGAGAGTGTCGGAGAGTTTTCGATCGGTCTGGATATTTGCAGAGTCGAGTTATAAAATATTTGAGTATGCAAAGAAAAGGGTTTATCGATTTGTCACATCCAGTGGGGTGGATTTGAGTGAGCAGAGTAAGAGTTTGAAGGGCAAGAAGAGAAAACTGAAGGGGGATGATGATAAAGAGCAAGATGTTGGTGGCACTTCAACGACCAGTGTAGTTTTAGATGAAGTTTTAGAGGAGGCACCAAAGTGGAAGGTCTTACGTGAGGTTCTAGAAGAGATAGAAGAAGAAAGACAAAAACATGCTTCATCAAGAGAAGAACTTCTGGTCGAAGATGATGTAGAAGATAGTGACATTGTTCTAGTGGCATGCAAAGATGAACGATCATGCATGCAGCTTGAGGATCTCATCAATAAGGGTCCACAAAAGATCATGCGGGAAGAATGGGAAAACTACTTATTGGGCAAGGGACAACTGCGTGACTTGCACACACGCTATAAAAAGAAACCAAAGAAAGCCAAAGGTTTTGGTATTCTTGATGGAGTTGTTCAGACAACCGCCCCCCAGAATACAGAAGCTAGCAGCATAAACAAGCAGGAACATGATGCTCTTTTGGCTGCAGCTTCTGCAATTAGAAATCGAGCTAAAAAAGAAGATGCTAGTGGAGATGATCCCCAGCCAATTGTTAGTGGCCGAGGACGTGGAAAGGGAAAGGGAAAAGTGGTTCCTGTGAAGTCTCCACAAAATGCAGAAGCTAGCAGTGTAAACAAGCAGGAACCTGCTTCAGGATCAGAGGTTGGAAATCAAACTAAAAAAGATAATGCTGTTGGAGATGATCCTCAACTTCTTGTTGGGAAGGGGCGCGGAAAGGGAAAAGGAAAAGTACGGAACAGAAAAGGCGCAGCTAGTGTTAAGACTTTGGGGAATAAAGTCGGCAGTGATGATAAAAAGGAAGAAACAAATGATACACTAGTTATTTCTGATTCAGAAAATGAAGGCCAGGCAGATGAAATCCATCAGGCGGTGACAGCTGATTCCATTGAAGCTGCTTTCCAGGGTGACCCTGTAGGTGAAGGGGTTTTGAGGAAGCATACTGGACAGCCTCATTCTACTGAATCGAGAACTGCTAAGCCACTACCTCCGGTGCACTTTTATGCTCTCGAAAGTGGTCAACCTATACTTGACATTTTGAGACCCTCTACGATTGTTGTTTACCATCCAGATATGACTTTTGTCAGGGAAATTGAAGTCCATAAAGCTGAGAATCCCTCAAAGAAGTTGAAAGTATATTTTCTTTTCTATGAAAATTCTTCTGAGGGTCAAAAGTTTGAGGCAAGCATTAGAAGGGAGAATGGAGCATTTGAATCTTTGATCAGGCAGAAGTCACTGATGATGATACCAGTTGATCAGGATGGAAACTGCATGGGATTGAATTCTTCTCTGGAACCCGAAGTGTCTTCCCAAAACTCTATAACTAGAAAAGCAGGGGGAAGAAGGGAGGTTGAGAAACAAATGCAGGTCATAGTGGACATGAGGGAGTTCATGAGCAGCCTTCCAAATGTTCTCCACCAGAAGGGCATGCGCATAATACCTGTGACCTTGGAAGTTGGGGATTATATCCTTTCTCCATTAATATGTGTGGAGAGAAAGAGTATTCAAGATCTTTTTATGAGCTTCACATCAGGCCGCCTATATAACCAAGTCGAGACTATGGTGCGCTACTATAGAATTCCTGTCCTCCTGATTGAATTTTCACAAGACAAAAGCTTCTCATTTCAGGTAATCCGAGTAATATCAATGGGGATTAGTAATTGGGTAGACTTAATTCTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000014 GO:0000109 GO:0000110 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006296 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0022402 GO:0022414 GO:0032991 GO:0033554 GO:0033683 GO:0034641 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901255 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03420 ko03460 map03420 map03460

Pfam Domains

Protein Families

ERCC4 Pro_isomerase

Protein Analysis

909

Amino Acids

101.98

Weight (kDa)

8.35

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERCC4	PF02732	807 - 888	1.7e-19	ERCC4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41150 AT5G41150
fragaria_vesca	FvH4_5g20470
malus_domestica	MD06G1046600.v1.1
prunus_persica	Prupe.5G054900_v2.0.a1 Prupe.5G054900_v2.0.a1
pyrus_communis	pycom06g03930
rosa_chinensis	RchiOBHm_Chr7g0205791
rosa_laevigata	RLG00000003354
rosa_multiflora	Rmu_sc0001336.1_g000030
rosa_roxburghii	Rroxscaffold_3G00251980
rosa_rugosa	Rorug07G0093100
rosa_samantha	Rh7AG224600 Rh7BG219800 Rh7CG238300 Rh7DG231300
rosa_wichuraiana	Rw7G019370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
AasI	GACNNNNNNGTC	1 cut(s)	719
Acc16I	TGCGCA	1 cut(s)	2477
Acc36I	ACCTGC	3 cut(s)	42, 1681, 2401
AccB1I	GGYRCC	3 cut(s)	56, 140, 1135
AccI	GTMKAC	1 cut(s)	2712
AccII	CGCG	6 cut(s)	44, 450, 452, 473, 587, 1758
AclWI	GGATC	8 cut(s)	64, 422, 767, 780, 1305, 1559, 1690, 1724
AcoI	YGGCCR	2 cut(s)	542, 1585
AcsI	RAATTY	4 cut(s)	2200, 2326, 2622, 2642
AcuI	CTGAAG	2 cut(s)	1076, 1662
AcvI	CACGTG	1 cut(s)	556
AfaI	GTAC	2 cut(s)	887, 1779
AfiI	CCNNNNNNNGG	6 cut(s)	53, 137, 559, 1679, 1915, 2467
AhlI	ACTAGT	1 cut(s)	1864
AjiI	CACGTC	1 cut(s)	1595
AjnI	CCWGG	2 cut(s)	1893, 1947
AleI	CACNNNNGTG	1 cut(s)	1141
AloI	GAACNNNNNNTCC	2 cut(s)	1602, 1634
Alw21I	GWGCWC	2 cut(s)	21, 2043
Alw26I	GTCTC	6 cut(s)	380, 484, 820, 1635, 2080, 2594
Alw44I	GTGCAC	1 cut(s)	2039
AlwI	GGATC	8 cut(s)	64, 422, 767, 780, 1305, 1559, 1690, 1724
AlwNI	CAGNNNCTG	1 cut(s)	1520
AoxI	GGCC	7 cut(s)	61, 82, 399, 542, 1585, 1891, 2578
ApaLI	GTGCAC	1 cut(s)	2039
ApeKI	GCWGC	8 cut(s)	808, 1288, 1476, 1511, 1514, 1796, 1940, 2442
ApoI	RAATTY	4 cut(s)	2200, 2326, 2622, 2642
AseI	ATTAAT	1 cut(s)	2525
Asp700I	GAANNNNTTC	1 cut(s)	1215
AspLEI	GCGC	7 cut(s)	46, 452, 589, 1758, 1796, 2478, 2613
AspS9I	GGNCC	2 cut(s)	4, 1313
AsuHPI	GGTGA	6 cut(s)	220, 283, 313, 1930, 1964, 1976
AsuII	TTCGAA	1 cut(s)	566
AsuNHI	GCTAGC	2 cut(s)	1472, 1649
AvaII	GGWCC	2 cut(s)	4, 1313
BaeGI	GKGCMC	2 cut(s)	143, 2043
BaeI	ACNNNNGTAYC	2 cut(s)	1851, 1884
BamHI	GGATCC	1 cut(s)	772
BanI	GGYRCC	3 cut(s)	56, 140, 1135
BauI	CACGAG	2 cut(s)	14, 65
BbrPI	CACGTG	1 cut(s)	556
BbsI	GAAGAC	5 cut(s)	500, 695, 806, 833, 2343
Bbv12I	GWGCWC	2 cut(s)	21, 2043
BbvI	GCAGC	8 cut(s)	820, 1300, 1488, 1498, 1526, 1808, 1927, 2454
BccI	CCATC	6 cut(s)	224, 469, 1427, 1917, 2118, 2300
BceAI	ACGGC	3 cut(s)	70, 353, 453
BcgI	CGANNNNNNTGC	4 cut(s)	46, 80, 289, 323
BciT130I	CCWGG	2 cut(s)	1895, 1949
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	2 cut(s)	2265, 2299
BcoDI	GTCTC	6 cut(s)	380, 484, 820, 1635, 2080, 2594
BcuI	ACTAGT	1 cut(s)	1864
BfaI	CTAG	8 cut(s)	1166, 1256, 1473, 1554, 1650, 1800, 1865, 2370
BfmI	CTRYAG	3 cut(s)	1512, 1959, 2617
BfuAI	ACCTGC	3 cut(s)	42, 1681, 2401
BfuI	GTATCC	1 cut(s)	886
BglII	AGATCT	1 cut(s)	2554
BlpI	GCTNAGC	1 cut(s)	2022
BmcAI	AGTACT	1 cut(s)	887
Bme1390I	CCNGG	2 cut(s)	1895, 1949
Bme18I	GGWCC	2 cut(s)	4, 1313
BmgBI	CACGTC	1 cut(s)	1595
BmgT120I	GGNCC	2 cut(s)	4, 1313
BmrFI	CCNGG	2 cut(s)	1895, 1949
BmsI	GCATC	6 cut(s)	309, 544, 655, 856, 1489, 1540
BmtI	GCTAGC	2 cut(s)	1476, 1653
BoxI	GACNNNNGTC	1 cut(s)	2126
BpiI	GAAGAC	5 cut(s)	500, 695, 806, 833, 2343
BplI	GAGNNNNNCTC	2 cut(s)	2147, 2179
BpmI	CTGGAG	1 cut(s)	596
Bpu1102I	GCTNAGC	1 cut(s)	2022
Bpu14I	TTCGAA	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	1313
Bsa29I	ATCGAT	1 cut(s)	985
BsaAI	YACGTR	2 cut(s)	556, 1157
BsaI	GGTCTC	3 cut(s)	380, 484, 2080
BsaJI	CCNNGG	5 cut(s)	396, 545, 1588, 1948, 2493
BsaWI	WCCGGW	3 cut(s)	420, 482, 2035
BsaXI	ACNNNNNCTCC	6 cut(s)	155, 158, 185, 188, 242, 272
Bsc4I	CCNNNNNNNGG	6 cut(s)	53, 137, 559, 1679, 1915, 2467
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	4 cut(s)	999, 1104, 1993, 2294
BseBI	CCWGG	2 cut(s)	1895, 1949
BseCI	ATCGAT	1 cut(s)	985
BseDI	CCNNGG	5 cut(s)	396, 545, 1588, 1948, 2493
BseGI	GGATG	9 cut(s)	150, 216, 300, 360, 670, 995, 1069, 2110, 2311
BseLI	CCNNNNNNNGG	6 cut(s)	53, 137, 559, 1679, 1915, 2467
BseMII	CTCAG	6 cut(s)	149, 356, 847, 890, 2145, 2199
BseNI	ACTGG	4 cut(s)	999, 1104, 1993, 2294
BseSI	GKGCMC	2 cut(s)	143, 2043
BseXI	GCAGC	8 cut(s)	820, 1300, 1488, 1498, 1526, 1808, 1927, 2454
BseYI	CCCAGC	1 cut(s)	1569
Bsh1236I	CGCG	6 cut(s)	44, 450, 452, 473, 587, 1758
Bsh1285I	CGRYCG	2 cut(s)	425, 923
BshFI	GGCC	7 cut(s)	63, 84, 401, 544, 1587, 1893, 2580
BshNI	GGYRCC	3 cut(s)	56, 140, 1135
BshVI	ATCGAT	1 cut(s)	985
BsiEI	CGRYCG	2 cut(s)	425, 923
BsiHKAI	GWGCWC	2 cut(s)	21, 2043
BsiSI	CCGG	8 cut(s)	60, 81, 273, 351, 421, 483, 590, 2036
BslFI	GGGAC	2 cut(s)	596, 1377
BslI	CCNNNNNNNGG	6 cut(s)	53, 137, 559, 1679, 1915, 2467
BsmAI	GTCTC	6 cut(s)	380, 484, 820, 1635, 2080, 2594
BsmFI	GGGAC	2 cut(s)	596, 1377
BsnI	GGCC	7 cut(s)	63, 84, 401, 544, 1587, 1893, 2580
Bso31I	GGTCTC	3 cut(s)	380, 484, 2080
Bsp119I	TTCGAA	1 cut(s)	566
Bsp1286I	GDGCHC	3 cut(s)	21, 143, 2043
Bsp1720I	GCTNAGC	1 cut(s)	2022
BspANI	GGCC	7 cut(s)	63, 84, 401, 544, 1587, 1893, 2580
BspCNI	CTCAG	6 cut(s)	148, 355, 846, 891, 2146, 2200
BspDI	ATCGAT	1 cut(s)	985
BspFNI	CGCG	6 cut(s)	44, 450, 452, 473, 587, 1758
BspHI	TCATGA	1 cut(s)	2436
BspMAI	CTGCAG	1 cut(s)	1516
BspMI	ACCTGC	3 cut(s)	42, 1681, 2401
BspOI	GCTAGC	2 cut(s)	1476, 1653
BspPI	GGATC	8 cut(s)	64, 422, 767, 780, 1305, 1559, 1690, 1724
BspT104I	TTCGAA	1 cut(s)	566
BspT107I	GGYRCC	3 cut(s)	56, 140, 1135
BspTNI	GGTCTC	3 cut(s)	380, 484, 2080
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	4 cut(s)	999, 1104, 1993, 2294
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	5 cut(s)	396, 545, 1588, 1948, 2493
BssSI	CACGAG	2 cut(s)	14, 65
BssT1I	CCWWGG	1 cut(s)	2493
Bst2BI	CACGAG	2 cut(s)	14, 65
Bst2UI	CCWGG	2 cut(s)	1895, 1949
Bst4CI	ACNGT	1 cut(s)	721
Bst6I	CTCTTC	2 cut(s)	1040, 1164
BstAPI	GCANNNNNTGC	1 cut(s)	1520
BstBAI	YACGTR	2 cut(s)	556, 1157
BstBI	TTCGAA	1 cut(s)	566
BstC8I	GCNNGC	8 cut(s)	471, 670, 1264, 1286, 1474, 1651, 2230, 2474
BstDEI	CTNAG	8 cut(s)	135, 342, 833, 899, 2022, 2154, 2208, 2723
BstEII	GGTNACC	1 cut(s)	1952
BstENI	CCTNNNNNAGG	1 cut(s)	1677
BstF5I	GGATG	9 cut(s)	150, 216, 300, 360, 670, 995, 1069, 2110, 2311
BstFNI	CGCG	6 cut(s)	44, 450, 452, 473, 587, 1758
BstHHI	GCGC	7 cut(s)	46, 452, 589, 1758, 1796, 2478, 2613
BstMAI	GTCTC	6 cut(s)	380, 484, 820, 1635, 2080, 2594
BstMCI	CGRYCG	2 cut(s)	425, 923
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 541, 1378, 1508, 1520, 1922
BstNI	CCWGG	2 cut(s)	1895, 1949
BstNSI	RCATGY	4 cut(s)	1199, 1266, 1288, 2476
BstPAI	GACNNNNGTC	1 cut(s)	2126
BstPI	GGTNACC	1 cut(s)	1952
BstSCI	CCNGG	2 cut(s)	1893, 1947
BstSFI	CTRYAG	3 cut(s)	1512, 1959, 2617
BstSLI	GKGCMC	2 cut(s)	143, 2043
BstUI	CGCG	6 cut(s)	44, 450, 452, 473, 587, 1758
BstV1I	GCAGC	8 cut(s)	820, 1300, 1488, 1498, 1526, 1808, 1927, 2454
BstV2I	GAAGAC	5 cut(s)	500, 695, 806, 833, 2343
BstX2I	RGATCY	4 cut(s)	414, 772, 1297, 2554
BstXI	CCANNNNNNTGG	1 cut(s)	1006
BstYI	RGATCY	4 cut(s)	414, 772, 1297, 2554
Bsu15I	ATCGAT	1 cut(s)	985
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	7 cut(s)	63, 84, 401, 544, 1587, 1893, 2580
BsuTUI	ATCGAT	1 cut(s)	985
BtgZI	GCGATG	1 cut(s)	488
BtrI	CACGTC	1 cut(s)	1595
BtsCI	GGATG	9 cut(s)	150, 216, 300, 360, 670, 995, 1069, 2110, 2311
BtsI	GCAGTG	2 cut(s)	1660, 1837
BtsIMutI	CAGTG	6 cut(s)	896, 1006, 1111, 1660, 1837, 2279
BveI	ACCTGC	3 cut(s)	42, 1681, 2401
Cac8I	GCNNGC	8 cut(s)	471, 670, 1264, 1286, 1474, 1651, 2230, 2474
CaiI	CAGNNNCTG	1 cut(s)	1520
CciI	TCATGA	1 cut(s)	2436
CfoI	GCGC	7 cut(s)	46, 452, 589, 1758, 1796, 2478, 2613
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	4, 1313
ClaI	ATCGAT	1 cut(s)	985
CseI	GACGC	2 cut(s)	50, 593
Csp6I	GTAC	2 cut(s)	886, 1778
CviQI	GTAC	2 cut(s)	886, 1778
DdeI	CTNAG	8 cut(s)	135, 342, 833, 899, 2022, 2154, 2208, 2723
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
EaeI	YGGCCR	2 cut(s)	542, 1585
Eam1104I	CTCTTC	2 cut(s)	1040, 1164
EarI	CTCTTC	2 cut(s)	1040, 1164
Eco130I	CCWWGG	1 cut(s)	2493
Eco147I	AGGCCT	1 cut(s)	401
Eco31I	GGTCTC	3 cut(s)	380, 484, 2080
Eco47I	GGWCC	2 cut(s)	4, 1313
Eco57I	CTGAAG	2 cut(s)	1076, 1662
Eco72I	CACGTG	1 cut(s)	556
Eco91I	GGTNACC	1 cut(s)	1952
EcoNI	CCTNNNNNAGG	1 cut(s)	1677
EcoO65I	GGTNACC	1 cut(s)	1952
EcoRI	GAATTC	2 cut(s)	2326, 2622
EcoRII	CCWGG	2 cut(s)	1893, 1947
EcoT14I	CCWWGG	1 cut(s)	2493
EcoT22I	ATGCAT	1 cut(s)	1286
ErhI	CCWWGG	1 cut(s)	2493
FaqI	GGGAC	2 cut(s)	596, 1377
FauI	CCCGC	4 cut(s)	250, 305, 373, 1323
FbaI	TGATCA	2 cut(s)	2265, 2299
FblI	GTMKAC	1 cut(s)	2712
FokI	GGATG	9 cut(s)	137, 203, 287, 347, 677, 982, 1076, 2097, 2318
FspAI	RTGCGCAY	1 cut(s)	2477
FspBI	CTAG	8 cut(s)	1166, 1256, 1473, 1554, 1650, 1800, 1865, 2370
FspI	TGCGCA	1 cut(s)	2477
GlaI	GCGC	7 cut(s)	45, 451, 588, 1757, 1795, 2477, 2612
GsaI	CCCAGC	1 cut(s)	1573
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	7 cut(s)	63, 84, 401, 544, 1587, 1893, 2580
HapII	CCGG	8 cut(s)	60, 81, 273, 351, 421, 483, 590, 2036
HgaI	GACGC	2 cut(s)	50, 593
HhaI	GCGC	7 cut(s)	46, 452, 589, 1758, 1796, 2478, 2613
Hin6I	GCGC	7 cut(s)	44, 450, 587, 1756, 1794, 2476, 2611
HinP1I	GCGC	7 cut(s)	44, 450, 587, 1756, 1794, 2476, 2611
HincII	GTYRAC	1 cut(s)	2066
HindII	GTYRAC	1 cut(s)	2066
HindIII	AAGCTT	1 cut(s)	2659
HpaII	CCGG	8 cut(s)	60, 81, 273, 351, 421, 483, 590, 2036
HphI	GGTGA	6 cut(s)	220, 283, 313, 1930, 1964, 1976
Hpy166II	GTNNAC	7 cut(s)	1316, 1660, 2041, 2066, 2107, 2422, 2713
Hpy8I	GTNNAC	7 cut(s)	1316, 1660, 2041, 2066, 2107, 2422, 2713
Hpy99I	CGWCG	2 cut(s)	44, 314
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	3 cut(s)	555, 1156, 1594
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 541, 1378, 1508, 1520, 1922
HpyF3I	CTNAG	8 cut(s)	135, 342, 833, 899, 2022, 2154, 2208, 2723
HpySE526I	ACGT	3 cut(s)	555, 1156, 1594
HspAI	GCGC	7 cut(s)	44, 450, 587, 1756, 1794, 2476, 2611
Ksp22I	TGATCA	2 cut(s)	2265, 2299
LmnI	GCTCC	1 cut(s)	2249
Lsp1109I	GCAGC	8 cut(s)	820, 1300, 1488, 1498, 1526, 1808, 1927, 2454
LweI	GCATC	6 cut(s)	309, 544, 655, 856, 1489, 1540
MaeI	CTAG	8 cut(s)	1166, 1256, 1473, 1554, 1650, 1800, 1865, 2370
MaeII	ACGT	3 cut(s)	555, 1156, 1594
MaeIII	GTNAC	8 cut(s)	871, 991, 1244, 1373, 1918, 1952, 2277, 2488
MfeI	CAATTG	1 cut(s)	1575
MflI	RGATCY	4 cut(s)	414, 772, 1297, 2554
MhlI	GDGCHC	3 cut(s)	21, 143, 2043
MlyI	GAGTC	3 cut(s)	348, 823, 950
MmeI	TCCRAC	4 cut(s)	750, 888, 1672, 1702
Mph1103I	ATGCAT	1 cut(s)	1286
MroXI	GAANNNNTTC	1 cut(s)	1215
MseI	TTAA	4 cut(s)	738, 1806, 2525, 2717
MslI	CAYNNNNRTG	3 cut(s)	1141, 2046, 2527
MspA1I	CMGCKG	1 cut(s)	1925
MspI	CCGG	8 cut(s)	60, 81, 273, 351, 421, 483, 590, 2036
MspR9I	CCNGG	2 cut(s)	1895, 1949
MunI	CAATTG	1 cut(s)	1575
MvaI	CCWGG	2 cut(s)	1895, 1949
MvnI	CGCG	6 cut(s)	44, 450, 452, 473, 587, 1758
MwoI	GCNNNNNNNGC	6 cut(s)	43, 541, 1378, 1508, 1520, 1922
NheI	GCTAGC	2 cut(s)	1472, 1649
NmeAIII	GCCGAG	2 cut(s)	570, 1613
NmuCI	GTSAC	7 cut(s)	991, 1244, 1373, 1918, 1952, 2277, 2488
NsbI	TGCGCA	1 cut(s)	2477
NsiI	ATGCAT	1 cut(s)	1286
NspI	RCATGY	4 cut(s)	1199, 1266, 1288, 2476
NspV	TTCGAA	1 cut(s)	566
OliI	CACNNNNGTG	1 cut(s)	1141
PaeI	GCATGC	3 cut(s)	1266, 1288, 2476
PagI	TCATGA	1 cut(s)	2436
PceI	AGGCCT	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 503
PdmI	GAANNNNTTC	1 cut(s)	1215
PfeI	GAWTC	7 cut(s)	330, 637, 1877, 1928, 2009, 2158, 2258
Ple19I	CGATCG	1 cut(s)	923
PleI	GAGTC	3 cut(s)	348, 823, 949
PmaCI	CACGTG	1 cut(s)	556
PmlI	CACGTG	1 cut(s)	556
PpsI	GAGTC	3 cut(s)	348, 823, 949
Ppu21I	YACGTR	2 cut(s)	556, 1157
PshAI	GACNNNNGTC	1 cut(s)	2126
PshBI	ATTAAT	1 cut(s)	2525
PsiI	TTATAA	1 cut(s)	951
Psp6I	CCWGG	2 cut(s)	1893, 1947
PspCI	CACGTG	1 cut(s)	556
PspEI	GGTNACC	1 cut(s)	1952
PspFI	CCCAGC	1 cut(s)	1569
PspGI	CCWGG	2 cut(s)	1893, 1947
PspPI	GGNCC	2 cut(s)	4, 1313
PstI	CTGCAG	1 cut(s)	1516
PstNI	CAGNNNCTG	1 cut(s)	1520
PsuI	RGATCY	4 cut(s)	414, 772, 1297, 2554
PvuI	CGATCG	1 cut(s)	923
PvuII	CAGCTG	1 cut(s)	1925
RsaI	GTAC	2 cut(s)	887, 1779
RsaNI	GTAC	2 cut(s)	886, 1778
RseI	CAYNNNNRTG	3 cut(s)	1141, 2046, 2527
SaqAI	TTAA	4 cut(s)	738, 1806, 2525, 2717
Sau96I	GGNCC	2 cut(s)	4, 1313
ScaI	AGTACT	1 cut(s)	887
SchI	GAGTC	3 cut(s)	348, 823, 950
ScrFI	CCNGG	2 cut(s)	1895, 1949
SduI	GDGCHC	3 cut(s)	21, 143, 2043
SfaNI	GCATC	6 cut(s)	309, 544, 655, 856, 1489, 1540
SfcI	CTRYAG	3 cut(s)	1512, 1959, 2617
SfuI	TTCGAA	1 cut(s)	566
SinI	GGWCC	2 cut(s)	4, 1313
SmiMI	CAYNNNNRTG	3 cut(s)	1141, 2046, 2527
SmlI	CTYRAG	1 cut(s)	1292
SmoI	CTYRAG	1 cut(s)	1292
SpeI	ACTAGT	1 cut(s)	1864
SphI	GCATGC	3 cut(s)	1266, 1288, 2476
SseBI	AGGCCT	1 cut(s)	401
SspI	AATATT	1 cut(s)	957
SspMI	CTAG	8 cut(s)	1166, 1256, 1473, 1554, 1650, 1800, 1865, 2370
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	1893, 1947
StyI	CCWWGG	1 cut(s)	2493
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	3 cut(s)	558, 1159, 1597
TaqII	GACCGA	1 cut(s)	913
TatI	WGTACW	1 cut(s)	885
TauI	GCSGC	3 cut(s)	49, 469, 2583
TfiI	GAWTC	7 cut(s)	330, 637, 1877, 1928, 2009, 2158, 2258
Tru1I	TTAA	4 cut(s)	738, 1806, 2525, 2717
Tru9I	TTAA	4 cut(s)	738, 1806, 2525, 2717
TscAI	CASTG	6 cut(s)	903, 1006, 1111, 1660, 1837, 2286
TseFI	GTSAC	7 cut(s)	991, 1244, 1373, 1918, 1952, 2277, 2488
TseI	GCWGC	8 cut(s)	808, 1288, 1476, 1511, 1514, 1796, 1940, 2442
Tsp45I	GTSAC	7 cut(s)	991, 1244, 1373, 1918, 1952, 2277, 2488
TspGWI	ACGGA	2 cut(s)	512, 1795
TspRI	CASTG	6 cut(s)	903, 1006, 1111, 1660, 1837, 2286
VneI	GTGCAC	1 cut(s)	2039
VpaK11BI	GGWCC	2 cut(s)	4, 1313
VspI	ATTAAT	1 cut(s)	2525
XagI	CCTNNNNNAGG	1 cut(s)	1677
XapI	RAATTY	4 cut(s)	2200, 2326, 2622, 2642
XbaI	TCTAGA	1 cut(s)	1165
XceI	RCATGY	4 cut(s)	1199, 1266, 1288, 2476
XmiI	GTMKAC	1 cut(s)	2712
XmnI	GAANNNNTTC	1 cut(s)	1215
XspI	CTAG	8 cut(s)	1166, 1256, 1473, 1554, 1650, 1800, 1865, 2370
ZrmI	AGTACT	1 cut(s)	887
Zsp2I	ATGCAT	1 cut(s)	1286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.