Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0014005

Physical Location & Seq

Genomic Coordinates Reverse (-)

18879057 .. 18883534

Gene Structure 4478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG219800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3114 bp

ATGGTCCAATTCCACGAGCACATAATCGCCGACCTGCTCGACGAGCCGCCCAACGGCACCGGCCTGGTGATCCTCTCCTCCGGCCTCTCCCTCCCCAAACTCATCTCCTCCCTTCTCCTCCTCCACACTCCTTCTCAGGGCACCCTCCTCATCCTCTCTCCCCACAACCCCTCCTCCTTCAAATCCCAACTCCTCCACCACTTCCACCCTAACCCCATCCCCGAAATCACCGCCGACCTCCCCGCCACCCACCGCAACTCCCTCTACTCCTCCGGCAACCCCTTCTTCATCACCCCCCGCATCCTCATCGTCGATCTCCTCACCTCCCGAATCCCGACCTCTCAGATCGCCGGACTCGTCATCCCCGCCGTCCATTCCCTCTCCGAGACCTCCACCGAGGCCTTCATCGTCAGGATCTTCCGGTCGCTCAACAAGACGGCGTTCGTCCGCGCGTTTTCGGATAAGCCGCACGCGATGGTCTCCGGGTTTGCGAAGACGGAGAGGACGATGAAGTGTTTGTATATGAGGAGATTGCATCTCTGGCCGAGGTTCCACGTGGAGGTTTCGAATGAGCTGGAGAGGGACGCGCCGGAGGTGGTGGATATTAGGGTTCCGATGACGAAGTACATGGTGGGGATTCAGAAGGCGATTCTTGAGGTCATGGATGCTTGCTTGAAGGAGATGAGGAAGACGAACAAGGTCGATGTGGAGGACTTGACTGTCGAAAACGGGCTGTTTAAGTCGTTTGATGAGATTGTGAGGAGGCAATTGGATCCGATTTGGCATACATTGGGGAAGAAGACCAAGCAGCTTGTGTCTGACTTGAAGACCCTCAGGAAGCTCTTGGATTACCTTGTTAGATATGATGCGGTAACTTATTTGAAGTACTTGGATACACTGAGAGTGTCGGAGAGTTTTCGATCGGTCTGGATATTTGCAGAGTCGAGTTATAAGATATTTGAGTATGCAAAGAAGAGGGTTTATCGATTTGTCACATCCGGTGGGGTGGATTTGAGTGAGCAGAGTAAGAGTTTGAAAGGCAAGAAGAGAAAACTGAAGGGGGATGATGATAAAGAGCAAGATGTTGGTGGCACTTCAACGACCAGTGTAGTATTAGATGAAGTTTTAGAGGAGGCGCCAAAGTGGAAGGTCTTACGTGAGGTTCTAGAAGAGATAGAAGAAGAAAGACAAAAACATGCTTCATCAAGAGAAGAACTTCTGGTCGAAGATGATGTAGAAGATAGTGACATTGTTCTAGTGGCATGCAAAGATGAACGATCATGCATGCAGCTTGAGGATCTCATCAATAATGGTCCACAAAAGGTCATGCGGGAAGAATGGGAAAACTACTTGTTGGGCAAGGGACAACTGCGTGACTTGCACACACGCTATAAAAAGAAACCAAAGAAAGCCAAAGGTTTTGGTATTCTTGATGGAGTTGTTCAGACAACCGCCCCCCAGAATACAGAAGCTAGCAGCATAAACAAGCAGGAACATGATGCTCTTTTGGCTGCAGCTTCTGCAATTAGAAATCGAGCTAAAAAAGAAGATGCTATTGGAGATGATCCCCAGCCAATTGTTAGTGGCCGAGGACGTGGAAAGGGAAAGGGAAAGCGAAAAGTGGTTCTTGCGAAGTCTCCACAAAATGCAGAAGCTAGCAGTGTAAACAAGCAGGAACCTGCTTCAGGATCAGAAGTTAGAAATCAAACTAAAAAAGATAATGCTGTTGGAGATGATCCTCAACTTCTTGTTGGGAAGGGGCGCGGAAAGGGAAAAGGAAAAGTACGGAACAGAAAAGGCGCAGCTAGTGTTAAGACTTTGGGGAATAAAGTCGGCAGTGATGATAAAAAGGAAGAAACAAATGATACACTAGTTATTTCTGATTCAGAAAATGAAGGCCAGGCAGATGAAATCCATCAGGCGGTGACAGCTGATTCCAGTGAAGCTGCTTTCCAGGGTGACCCTGTAGGTGAAGGGGTTTTGAGGAAGCATACTGGACAGCCTCATTCTACTGAATCGAGAACTGCTAAGCCACTACCTCTGGTGCACTTTTATGCTCTCGAAAGTGGTCAACCTATACTTGACATTTTGAGACCCTCTACGATTGTTGTTTACCATCCAGATATGACTTTTGTCAGGGAAATTGAAGTCCATAAAGCTGAGAATCCCTCAAAGAAGTTGAAAGTATATTTTCTTTTCTATGAAGATTCTTCTGAGGGTCAAAAGTTTGAGGCAAGCATTAGAAGGGAGAATGGAGCATTTGAATCTTTGATCAGGCAGAAGTCACTGATGATGATACCAGTTGATCAGGATGGAAACTGCATGGGATTGAATTCTTCTCTAGAACCCGAAGTGTCTTCCCAAAACTCTATAACTAGAAAAGCGGGGGGAAGAAGGGAGGTTGAGAAACAAAAGCAGGTCATAGTGGACATGAGGGAGTTCATGAGCAGCCTTCCAAACGTTCTCCACCAGAAGGACATGCGCATAATACCTGTGACCTTGGAAGTTGGGGATTATATCCTTTCTCCATTAATATGTGTGGAGAGAAAGAGTATTCAAGATCTTTTTATGAGCTTCACATCAGGCCGCCTATATAACCAAGTCGAGAGTATGGTGCGCTACTATAGAATACCTGTCCTCCTGATTGAATTTTCACAAGACAAAAGCTTCTCATTTCAGTCTGCAAGTGATATTGGGGATGATGTCACGCCAAATAGTATTATTTCTAAGTTGTCGTTGCTTGTTCTACATTTCCCTCGGCTACGAATCATATGGTCTCGCAGTCTCTATGCTACTGCTGAAATCTTTGCTACTCTCAAGGCAAATCAGGATGAACCTGACGAGACAAAAGCAACTAGAGTCGGTGTACCCTCTGAAGATGGGATCATAGAAGATGACGTGAGGGCTGAAAATTACAATACATGTGCCGTGGAGTTCTTGAGGCGACTCCCAGGTGTGACAGATTCGAATTACAGGGCTATAATGGATGGTTGTAAGAGCTTGGCAGAACTTGCTCTTATGCCAGTGGAGAGGCTAGCCGAATTAATGGGTGGTCATAAAGCAGCTCGGACGTTGAGAGAGTTCCTTGATGCCAAGTATCCAACCCTGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000014 GO:0000109 GO:0000110 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006296 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0022402 GO:0022414 GO:0032991 GO:0033554 GO:0033683 GO:0034641 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901255 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03420 ko03460 map03420 map03460

Pfam Domains

Protein Families

ERCC4 Pro_isomerase

Protein Analysis

1037

Amino Acids

116.36

Weight (kDa)

7.14

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERCC4	PF02732	809 - 938	4.3e-28	ERCC4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41150 AT5G41150
fragaria_vesca	FvH4_5g20470
malus_domestica	MD06G1046600.v1.1
prunus_persica	Prupe.5G054900_v2.0.a1 Prupe.5G054900_v2.0.a1
pyrus_communis	pycom06g03930
rosa_chinensis	RchiOBHm_Chr7g0205791
rosa_laevigata	RLG00000003354
rosa_multiflora	Rmu_sc0001336.1_g000030
rosa_roxburghii	Rroxscaffold_3G00251980
rosa_rugosa	Rorug07G0093100
rosa_samantha	Rh7AG224600 Rh7BG219800 Rh7CG238300 Rh7DG231300
rosa_wichuraiana	Rw7G019370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
AasI	GACNNNNNNGTC	1 cut(s)	719
Acc16I	TGCGCA	1 cut(s)	2483
Acc36I	ACCTGC	3 cut(s)	42, 1687, 2407
AccB1I	GGYRCC	3 cut(s)	56, 140, 1135
AccII	CGCG	5 cut(s)	450, 452, 473, 587, 1764
AclI	AACGTT	1 cut(s)	2460
AclWI	GGATC	9 cut(s)	64, 422, 767, 780, 1305, 1559, 1696, 1730, 2891
AcoI	YGGCCR	2 cut(s)	542, 1585
AcsI	RAATTY	2 cut(s)	2332, 2648
AcuI	CTGAAG	3 cut(s)	1076, 1668, 2895
AcvI	CACGTG	1 cut(s)	556
AcyI	GRCGYC	1 cut(s)	1136
AfaI	GTAC	4 cut(s)	626, 887, 1785, 2868
AfiI	CCNNNNNNNGG	6 cut(s)	53, 137, 559, 1685, 1921, 2473
AflIII	ACRYGT	1 cut(s)	2921
AhlI	ACTAGT	1 cut(s)	1870
AjiI	CACGTC	2 cut(s)	1595, 2899
AjnI	CCWGG	4 cut(s)	63, 1899, 1953, 2950
AjuI	GAANNNNNNNTTGG	2 cut(s)	1539, 1571
Alw21I	GWGCWC	2 cut(s)	21, 2049
Alw26I	GTCTC	7 cut(s)	380, 484, 1641, 2086, 2781, 2789, 2837
Alw44I	GTGCAC	1 cut(s)	2045
AlwI	GGATC	9 cut(s)	64, 422, 767, 780, 1305, 1559, 1696, 1730, 2891
AlwNI	CAGNNNCTG	1 cut(s)	1520
AoxI	GGCC	7 cut(s)	61, 82, 399, 542, 1585, 1897, 2584
ApaLI	GTGCAC	1 cut(s)	2045
ApeKI	GCWGC	9 cut(s)	808, 1288, 1476, 1511, 1514, 1802, 1946, 2448, 3062
ApoI	RAATTY	2 cut(s)	2332, 2648
AseI	ATTAAT	2 cut(s)	2531, 3044
Asp700I	GAANNNNTTC	1 cut(s)	1215
AspLEI	GCGC	7 cut(s)	452, 589, 1138, 1764, 1802, 2484, 2619
AspS9I	GGNCC	2 cut(s)	4, 1313
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	7 cut(s)	79, 220, 283, 313, 1936, 1970, 1982
AsuII	TTCGAA	2 cut(s)	566, 2966
AsuNHI	GCTAGC	3 cut(s)	1472, 1655, 3034
AvaII	GGWCC	2 cut(s)	4, 1313
AxyI	CCTNAGG	1 cut(s)	833
BaeGI	GKGCMC	2 cut(s)	143, 2049
BaeI	ACNNNNGTAYC	2 cut(s)	1857, 1890
BamHI	GGATCC	1 cut(s)	772
BanI	GGYRCC	3 cut(s)	56, 140, 1135
BauI	CACGAG	1 cut(s)	14
BbrPI	CACGTG	1 cut(s)	556
BbsI	GAAGAC	5 cut(s)	500, 695, 806, 833, 2349
Bbv12I	GWGCWC	2 cut(s)	21, 2049
BbvI	GCAGC	9 cut(s)	820, 1300, 1488, 1498, 1526, 1814, 1933, 2460, 3074
BccI	CCATC	8 cut(s)	224, 469, 1427, 1923, 2124, 2306, 2873, 2981
BceAI	ACGGC	4 cut(s)	70, 353, 453, 2912
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BciT130I	CCWGG	4 cut(s)	65, 1901, 1955, 2952
BciVI	GTATCC	2 cut(s)	886, 3108
BclI	TGATCA	2 cut(s)	2271, 2305
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	7 cut(s)	380, 484, 1641, 2086, 2781, 2789, 2837
BcuI	ACTAGT	1 cut(s)	1870
BfmI	CTRYAG	3 cut(s)	1512, 1965, 2623
BfoI	RGCGCY	1 cut(s)	1139
BfuAI	ACCTGC	3 cut(s)	42, 1687, 2407
BfuI	GTATCC	2 cut(s)	886, 3108
BglII	AGATCT	1 cut(s)	2560
BlpI	GCTNAGC	1 cut(s)	2028
BmcAI	AGTACT	1 cut(s)	887
Bme1390I	CCNGG	5 cut(s)	65, 484, 1901, 1955, 2952
Bme18I	GGWCC	2 cut(s)	4, 1313
BmgBI	CACGTC	2 cut(s)	1595, 2899
BmgT120I	GGNCC	2 cut(s)	4, 1313
BmiI	GGNNCC	7 cut(s)	58, 142, 551, 612, 774, 1137, 1677
BmrFI	CCNGG	5 cut(s)	65, 484, 1901, 1955, 2952
BmsI	GCATC	7 cut(s)	309, 544, 655, 856, 1489, 1540, 3079
BmtI	GCTAGC	3 cut(s)	1476, 1659, 3038
BoxI	GACNNNNGTC	1 cut(s)	2132
BpiI	GAAGAC	5 cut(s)	500, 695, 806, 833, 2349
BplI	GAGNNNNNCTC	2 cut(s)	2153, 2185
BpmI	CTGGAG	1 cut(s)	596
Bpu1102I	GCTNAGC	1 cut(s)	2028
Bpu14I	TTCGAA	2 cut(s)	566, 2966
BpuEI	CTTGAG	4 cut(s)	674, 1313, 2801, 2959
BpuMI	CCSGG	1 cut(s)	484
Bsa29I	ATCGAT	1 cut(s)	985
BsaAI	YACGTR	2 cut(s)	556, 1157
BsaHI	GRCGYC	1 cut(s)	1136
BsaI	GGTCTC	4 cut(s)	380, 484, 2086, 2781
BsaJI	CCNNGG	8 cut(s)	396, 545, 1588, 1954, 2499, 2756, 2928, 2950
BsaWI	WCCGGW	2 cut(s)	420, 998
BsaXI	ACNNNNNCTCC	8 cut(s)	155, 158, 185, 188, 242, 272, 2622, 2652
Bsc4I	CCNNNNNNNGG	6 cut(s)	53, 137, 559, 1685, 1921, 2473
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	5 cut(s)	1104, 1938, 1999, 2300, 3023
Bse21I	CCTNAGG	1 cut(s)	833
BseBI	CCWGG	4 cut(s)	65, 1901, 1955, 2952
BseCI	ATCGAT	1 cut(s)	985
BseDI	CCNNGG	8 cut(s)	396, 545, 1588, 1954, 2499, 2756, 2928, 2950
BseLI	CCNNNNNNNGG	6 cut(s)	53, 137, 559, 1685, 1921, 2473
BseMII	CTCAG	6 cut(s)	149, 356, 847, 890, 2151, 2205
BseNI	ACTGG	5 cut(s)	1104, 1938, 1999, 2300, 3023
BseSI	GKGCMC	2 cut(s)	143, 2049
BseXI	GCAGC	9 cut(s)	820, 1300, 1488, 1498, 1526, 1814, 1933, 2460, 3074
BseYI	CCCAGC	1 cut(s)	1569
Bsh1236I	CGCG	5 cut(s)	450, 452, 473, 587, 1764
Bsh1285I	CGRYCG	2 cut(s)	425, 923
BshFI	GGCC	7 cut(s)	63, 84, 401, 544, 1587, 1899, 2586
BshNI	GGYRCC	3 cut(s)	56, 140, 1135
BshVI	ATCGAT	1 cut(s)	985
BsiEI	CGRYCG	2 cut(s)	425, 923
BsiHKAI	GWGCWC	2 cut(s)	21, 2049
BsiSI	CCGG	8 cut(s)	60, 81, 273, 351, 421, 483, 590, 999
BslFI	GGGAC	2 cut(s)	596, 1377
BslI	CCNNNNNNNGG	6 cut(s)	53, 137, 559, 1685, 1921, 2473
BsmAI	GTCTC	7 cut(s)	380, 484, 1641, 2086, 2781, 2789, 2837
BsmFI	GGGAC	2 cut(s)	596, 1377
BsnI	GGCC	7 cut(s)	63, 84, 401, 544, 1587, 1899, 2586
Bso31I	GGTCTC	4 cut(s)	380, 484, 2086, 2781
Bsp119I	TTCGAA	2 cut(s)	566, 2966
Bsp1286I	GDGCHC	3 cut(s)	21, 143, 2049
Bsp1720I	GCTNAGC	1 cut(s)	2028
BspANI	GGCC	7 cut(s)	63, 84, 401, 544, 1587, 1899, 2586
BspCNI	CTCAG	6 cut(s)	148, 355, 846, 891, 2152, 2206
BspDI	ATCGAT	1 cut(s)	985
BspFNI	CGCG	5 cut(s)	450, 452, 473, 587, 1764
BspHI	TCATGA	1 cut(s)	2442
BspLI	GGNNCC	7 cut(s)	58, 142, 551, 612, 774, 1137, 1677
BspMAI	CTGCAG	1 cut(s)	1516
BspMI	ACCTGC	3 cut(s)	42, 1687, 2407
BspOI	GCTAGC	3 cut(s)	1476, 1659, 3038
BspPI	GGATC	9 cut(s)	64, 422, 767, 780, 1305, 1559, 1696, 1730, 2891
BspT104I	TTCGAA	2 cut(s)	566, 2966
BspT107I	GGYRCC	3 cut(s)	56, 140, 1135
BspTNI	GGTCTC	4 cut(s)	380, 484, 2086, 2781
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	5 cut(s)	1104, 1938, 1999, 2300, 3023
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	8 cut(s)	396, 545, 1588, 1954, 2499, 2756, 2928, 2950
BssNI	GRCGYC	1 cut(s)	1136
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	2499
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	4 cut(s)	65, 1901, 1955, 2952
Bst4CI	ACNGT	1 cut(s)	721
Bst6I	CTCTTC	3 cut(s)	968, 1040, 1164
BstACI	GRCGYC	1 cut(s)	1136
BstAPI	GCANNNNNTGC	2 cut(s)	1520, 3011
BstBAI	YACGTR	2 cut(s)	556, 1157
BstBI	TTCGAA	2 cut(s)	566, 2966
BstC8I	GCNNGC	8 cut(s)	471, 670, 1264, 1286, 1474, 1657, 2236, 3036
BstDEI	CTNAG	8 cut(s)	135, 342, 833, 899, 2028, 2160, 2214, 2727
BstDSI	CCRYGG	1 cut(s)	2928
BstEII	GGTNACC	1 cut(s)	1958
BstENI	CCTNNNNNAGG	1 cut(s)	1683
BstFNI	CGCG	5 cut(s)	450, 452, 473, 587, 1764
BstH2I	RGCGCY	1 cut(s)	1139
BstHHI	GCGC	7 cut(s)	452, 589, 1138, 1764, 1802, 2484, 2619
BstMAI	GTCTC	7 cut(s)	380, 484, 1641, 2086, 2781, 2789, 2837
BstMCI	CGRYCG	2 cut(s)	425, 923
BstMWI	GCNNNNNNNGC	7 cut(s)	43, 541, 1378, 1508, 1520, 1928, 3011
BstNI	CCWGG	4 cut(s)	65, 1901, 1955, 2952
BstNSI	RCATGY	5 cut(s)	1199, 1266, 1288, 2482, 2925
BstPAI	GACNNNNGTC	1 cut(s)	2132
BstPI	GGTNACC	1 cut(s)	1958
BstSCI	CCNGG	5 cut(s)	63, 482, 1899, 1953, 2950
BstSFI	CTRYAG	3 cut(s)	1512, 1965, 2623
BstSLI	GKGCMC	2 cut(s)	143, 2049
BstUI	CGCG	5 cut(s)	450, 452, 473, 587, 1764
BstV1I	GCAGC	9 cut(s)	820, 1300, 1488, 1498, 1526, 1814, 1933, 2460, 3074
BstV2I	GAAGAC	5 cut(s)	500, 695, 806, 833, 2349
BstX2I	RGATCY	4 cut(s)	414, 772, 1297, 2560
BstYI	RGATCY	4 cut(s)	414, 772, 1297, 2560
Bsu15I	ATCGAT	1 cut(s)	985
Bsu36I	CCTNAGG	1 cut(s)	833
BsuI	GTATCC	2 cut(s)	886, 3108
BsuRI	GGCC	7 cut(s)	63, 84, 401, 544, 1587, 1899, 2586
BsuTUI	ATCGAT	1 cut(s)	985
BtgI	CCRYGG	1 cut(s)	2928
BtgZI	GCGATG	1 cut(s)	488
BtrI	CACGTC	2 cut(s)	1595, 2899
BtsI	GCAGTG	2 cut(s)	1666, 1843
BtsIMutI	CAGTG	7 cut(s)	896, 1111, 1666, 1843, 1945, 2285, 3030
BveI	ACCTGC	3 cut(s)	42, 1687, 2407
Cac8I	GCNNGC	8 cut(s)	471, 670, 1264, 1286, 1474, 1657, 2236, 3036
CaiI	CAGNNNCTG	1 cut(s)	1520
CciI	TCATGA	1 cut(s)	2442
CfoI	GCGC	7 cut(s)	452, 589, 1138, 1764, 1802, 2484, 2619
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	4, 1313
ClaI	ATCGAT	1 cut(s)	985
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	4 cut(s)	625, 886, 1784, 2867
CviQI	GTAC	4 cut(s)	625, 886, 1784, 2867
DdeI	CTNAG	8 cut(s)	135, 342, 833, 899, 2028, 2160, 2214, 2727
DinI	GGCGCC	1 cut(s)	1137
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
EaeI	YGGCCR	2 cut(s)	542, 1585
Eam1104I	CTCTTC	3 cut(s)	968, 1040, 1164
EarI	CTCTTC	3 cut(s)	968, 1040, 1164
Eco130I	CCWWGG	1 cut(s)	2499
Eco147I	AGGCCT	1 cut(s)	401
Eco31I	GGTCTC	4 cut(s)	380, 484, 2086, 2781
Eco47I	GGWCC	2 cut(s)	4, 1313
Eco57I	CTGAAG	3 cut(s)	1076, 1668, 2895
Eco72I	CACGTG	1 cut(s)	556
Eco81I	CCTNAGG	1 cut(s)	833
Eco91I	GGTNACC	1 cut(s)	1958
EcoNI	CCTNNNNNAGG	1 cut(s)	1683
EcoO65I	GGTNACC	1 cut(s)	1958
EcoRI	GAATTC	1 cut(s)	2332
EcoRII	CCWGG	4 cut(s)	63, 1899, 1953, 2950
EcoT14I	CCWWGG	1 cut(s)	2499
EcoT22I	ATGCAT	1 cut(s)	1286
EgeI	GGCGCC	1 cut(s)	1137
EheI	GGCGCC	1 cut(s)	1137
ErhI	CCWWGG	1 cut(s)	2499
FalI	AAGNNNNNCTT	2 cut(s)	1611, 1643
FaqI	GGGAC	2 cut(s)	596, 1377
FauI	CCCGC	5 cut(s)	250, 305, 373, 1323, 2377
FauNDI	CATATG	1 cut(s)	2771
FbaI	TGATCA	2 cut(s)	2271, 2305
FspAI	RTGCGCAY	1 cut(s)	2483
FspI	TGCGCA	1 cut(s)	2483
GlaI	GCGC	7 cut(s)	451, 588, 1137, 1763, 1801, 2483, 2618
GsaI	CCCAGC	1 cut(s)	1573
GsuI	CTGGAG	1 cut(s)	596
HaeII	RGCGCY	1 cut(s)	1139
HaeIII	GGCC	7 cut(s)	63, 84, 401, 544, 1587, 1899, 2586
HapII	CCGG	8 cut(s)	60, 81, 273, 351, 421, 483, 590, 999
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	7 cut(s)	452, 589, 1138, 1764, 1802, 2484, 2619
Hin1I	GRCGYC	1 cut(s)	1136
Hin6I	GCGC	7 cut(s)	450, 587, 1136, 1762, 1800, 2482, 2617
HinP1I	GCGC	7 cut(s)	450, 587, 1136, 1762, 1800, 2482, 2617
HincII	GTYRAC	1 cut(s)	2072
HindII	GTYRAC	1 cut(s)	2072
HindIII	AAGCTT	1 cut(s)	2665
HpaII	CCGG	8 cut(s)	60, 81, 273, 351, 421, 483, 590, 999
HphI	GGTGA	7 cut(s)	79, 220, 283, 313, 1936, 1970, 1982
Hpy166II	GTNNAC	7 cut(s)	1316, 1666, 2047, 2072, 2113, 2428, 2867
Hpy8I	GTNNAC	7 cut(s)	1316, 1666, 2047, 2072, 2113, 2428, 2867
Hpy99I	CGWCG	2 cut(s)	44, 314
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	6 cut(s)	555, 1156, 1594, 2460, 2898, 3071
HpyF10VI	GCNNNNNNNGC	7 cut(s)	43, 541, 1378, 1508, 1520, 1928, 3011
HpyF3I	CTNAG	8 cut(s)	135, 342, 833, 899, 2028, 2160, 2214, 2727
HpySE526I	ACGT	6 cut(s)	555, 1156, 1594, 2460, 2898, 3071
Hsp92I	GRCGYC	1 cut(s)	1136
HspAI	GCGC	7 cut(s)	450, 587, 1136, 1762, 1800, 2482, 2617
KasI	GGCGCC	1 cut(s)	1135
Ksp22I	TGATCA	2 cut(s)	2271, 2305
LmnI	GCTCC	1 cut(s)	2255
Lsp1109I	GCAGC	9 cut(s)	820, 1300, 1488, 1498, 1526, 1814, 1933, 2460, 3074
LweI	GCATC	7 cut(s)	309, 544, 655, 856, 1489, 1540, 3079
MaeII	ACGT	6 cut(s)	555, 1156, 1594, 2460, 2898, 3071
MfeI	CAATTG	2 cut(s)	767, 1575
MflI	RGATCY	4 cut(s)	414, 772, 1297, 2560
MhlI	GDGCHC	3 cut(s)	21, 143, 2049
Mly113I	GGCGCC	1 cut(s)	1136
MlyI	GAGTC	4 cut(s)	348, 950, 2868, 2940
MmeI	TCCRAC	2 cut(s)	888, 1708
Mph1103I	ATGCAT	1 cut(s)	1286
MroXI	GAANNNNTTC	1 cut(s)	1215
MseI	TTAA	4 cut(s)	738, 1812, 2531, 3044
MslI	CAYNNNNRTG	2 cut(s)	2052, 2533
MspA1I	CMGCKG	1 cut(s)	1931
MspI	CCGG	8 cut(s)	60, 81, 273, 351, 421, 483, 590, 999
MspR9I	CCNGG	5 cut(s)	65, 484, 1901, 1955, 2952
MunI	CAATTG	2 cut(s)	767, 1575
MvaI	CCWGG	4 cut(s)	65, 1901, 1955, 2952
MvnI	CGCG	5 cut(s)	450, 452, 473, 587, 1764
MwoI	GCNNNNNNNGC	7 cut(s)	43, 541, 1378, 1508, 1520, 1928, 3011
NarI	GGCGCC	1 cut(s)	1136
NciI	CCSGG	1 cut(s)	484
NdeI	CATATG	1 cut(s)	2771
NheI	GCTAGC	3 cut(s)	1472, 1655, 3034
NlaIV	GGNNCC	7 cut(s)	58, 142, 551, 612, 774, 1137, 1677
NmeAIII	GCCGAG	3 cut(s)	570, 1613, 2737
NmuCI	GTSAC	9 cut(s)	991, 1244, 1373, 1924, 1958, 2283, 2494, 2704, 2956
NsbI	TGCGCA	1 cut(s)	2483
NsiI	ATGCAT	1 cut(s)	1286
NspI	RCATGY	5 cut(s)	1199, 1266, 1288, 2482, 2925
NspV	TTCGAA	2 cut(s)	566, 2966
PaeI	GCATGC	2 cut(s)	1266, 1288
PagI	TCATGA	1 cut(s)	2442
PceI	AGGCCT	1 cut(s)	401
PciI	ACATGT	1 cut(s)	2921
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 503
PdmI	GAANNNNTTC	1 cut(s)	1215
Ple19I	CGATCG	1 cut(s)	923
PleI	GAGTC	4 cut(s)	348, 949, 2867, 2940
PluTI	GGCGCC	1 cut(s)	1139
PmaCI	CACGTG	1 cut(s)	556
PmlI	CACGTG	1 cut(s)	556
PpsI	GAGTC	4 cut(s)	348, 949, 2867, 2940
Ppu21I	YACGTR	2 cut(s)	556, 1157
PscI	ACATGT	1 cut(s)	2921
PshAI	GACNNNNGTC	1 cut(s)	2132
PshBI	ATTAAT	2 cut(s)	2531, 3044
PsiI	TTATAA	1 cut(s)	951
Psp1406I	AACGTT	1 cut(s)	2460
Psp6I	CCWGG	4 cut(s)	63, 1899, 1953, 2950
PspCI	CACGTG	1 cut(s)	556
PspEI	GGTNACC	1 cut(s)	1958
PspFI	CCCAGC	1 cut(s)	1569
PspGI	CCWGG	4 cut(s)	63, 1899, 1953, 2950
PspN4I	GGNNCC	7 cut(s)	58, 142, 551, 612, 774, 1137, 1677
PspPI	GGNCC	2 cut(s)	4, 1313
PstI	CTGCAG	1 cut(s)	1516
PstNI	CAGNNNCTG	1 cut(s)	1520
PsuI	RGATCY	4 cut(s)	414, 772, 1297, 2560
PvuI	CGATCG	1 cut(s)	923
PvuII	CAGCTG	1 cut(s)	1931
RsaI	GTAC	4 cut(s)	626, 887, 1785, 2868
RsaNI	GTAC	4 cut(s)	625, 886, 1784, 2867
RseI	CAYNNNNRTG	2 cut(s)	2052, 2533
SaqAI	TTAA	4 cut(s)	738, 1812, 2531, 3044
Sau96I	GGNCC	2 cut(s)	4, 1313
ScaI	AGTACT	1 cut(s)	887
SchI	GAGTC	4 cut(s)	348, 950, 2868, 2940
ScrFI	CCNGG	5 cut(s)	65, 484, 1901, 1955, 2952
SduI	GDGCHC	3 cut(s)	21, 143, 2049
SfaNI	GCATC	7 cut(s)	309, 544, 655, 856, 1489, 1540, 3079
SfcI	CTRYAG	3 cut(s)	1512, 1965, 2623
SfoI	GGCGCC	1 cut(s)	1137
SfuI	TTCGAA	2 cut(s)	566, 2966
SinI	GGWCC	2 cut(s)	4, 1313
SmiMI	CAYNNNNRTG	2 cut(s)	2052, 2533
SmlI	CTYRAG	4 cut(s)	653, 1292, 2816, 2938
SmoI	CTYRAG	4 cut(s)	653, 1292, 2816, 2938
SpeI	ACTAGT	1 cut(s)	1870
SphI	GCATGC	2 cut(s)	1266, 1288
SseBI	AGGCCT	1 cut(s)	401
SspDI	GGCGCC	1 cut(s)	1135
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	5 cut(s)	63, 482, 1899, 1953, 2950
StyI	CCWWGG	1 cut(s)	2499
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	6 cut(s)	558, 1159, 1597, 2463, 2901, 3074
TaqII	GACCGA	1 cut(s)	913
TatI	WGTACW	2 cut(s)	624, 885
TauI	GCSGC	3 cut(s)	49, 469, 2589
Tru1I	TTAA	4 cut(s)	738, 1812, 2531, 3044
Tru9I	TTAA	4 cut(s)	738, 1812, 2531, 3044
TscAI	CASTG	7 cut(s)	903, 1111, 1666, 1843, 1945, 2292, 3030
TseFI	GTSAC	9 cut(s)	991, 1244, 1373, 1924, 1958, 2283, 2494, 2704, 2956
TseI	GCWGC	9 cut(s)	808, 1288, 1476, 1511, 1514, 1802, 1946, 2448, 3062
Tsp45I	GTSAC	9 cut(s)	991, 1244, 1373, 1924, 1958, 2283, 2494, 2704, 2956
TspGWI	ACGGA	2 cut(s)	512, 1801
TspRI	CASTG	7 cut(s)	903, 1111, 1666, 1843, 1945, 2292, 3030
VneI	GTGCAC	1 cut(s)	2045
VpaK11BI	GGWCC	2 cut(s)	4, 1313
VspI	ATTAAT	2 cut(s)	2531, 3044
XagI	CCTNNNNNAGG	1 cut(s)	1683
XapI	RAATTY	2 cut(s)	2332, 2648
XbaI	TCTAGA	2 cut(s)	1165, 2341
XceI	RCATGY	5 cut(s)	1199, 1266, 1288, 2482, 2925
XmnI	GAANNNNTTC	1 cut(s)	1215
ZrmI	AGTACT	1 cut(s)	887
Zsp2I	ATGCAT	1 cut(s)	1286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.