Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001336.1

Orthogroup ID

OG0014005

Physical Location & Seq

Genomic Coordinates Forward (+)

97515 .. 100307

Gene Structure 2793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001336.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgtcatggccggatggcttgagggcgaaggttagcactaacttccttgggtttgatccccttaacctccggaaggttagctacaccggtcacacaatcaccggcctcatcatcctcgccgtcgatttcctctccgagacctccatcgaggccttcatcatcaagatcttccggtccctcaacaaaacagcgttcgtccgcgcattttcagataagccccatgccatggtcttcgggtttgcgaagacggagaggaccatgaagtatttatatatgaggagattgcatctgtggcctaggtttcatgtgaaggtttcaaatgagttggatagggacgtgctggaggtggtggatattaggttccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000014 GO:0000109 GO:0000110 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006296 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0022402 GO:0022414 GO:0032991 GO:0033554 GO:0033683 GO:0034641 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901255 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03420 ko03460 map03420 map03460

Pfam Domains

Protein Families

ERCC4 Pro_isomerase

Protein Analysis

122

Amino Acids

14.27

Weight (kDa)

10.06

Isoelectric Point (pI)

26.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41150 AT5G41150
fragaria_vesca	FvH4_5g20470
malus_domestica	MD06G1046600.v1.1
prunus_persica	Prupe.5G054900_v2.0.a1 Prupe.5G054900_v2.0.a1
pyrus_communis	pycom06g03930
rosa_chinensis	RchiOBHm_Chr7g0205791
rosa_laevigata	RLG00000003354
rosa_multiflora	Rmu_sc0001336.1_g000030
rosa_roxburghii	Rroxscaffold_3G00251980
rosa_rugosa	Rorug07G0093100
rosa_samantha	Rh7AG224600 Rh7BG219800 Rh7CG238300 Rh7DG231300
rosa_wichuraiana	Rw7G019370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccII	CGCG	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	69
AciI	CCGC	1 cut(s)	199
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	73, 226
AgeI	ACCGGT	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	318
AjiI	CACGTC	1 cut(s)	337
AloI	GAACNNNNNNTCC	1 cut(s)	344
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	69
AoxI	GGCC	4 cut(s)	8, 103, 150, 293
AsiGI	ACCGGT	1 cut(s)	86
AspA2I	CCTAGG	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	174, 255
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	2 cut(s)	174, 255
AvrII	CCTAGG	1 cut(s)	296
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbsI	GAAGAC	2 cut(s)	223, 251
BccI	CCATC	2 cut(s)	8, 152
BceAI	ACGGC	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	297
BglII	AGATCT	1 cut(s)	165
BlnI	CCTAGG	1 cut(s)	296
Bme18I	GGWCC	2 cut(s)	174, 255
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	174, 255
BmiI	GGNNCC	2 cut(s)	176, 362
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	2 cut(s)	223, 251
BpmI	CTGGAG	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	3 cut(s)	46, 225, 296
BsaWI	WCCGGW	3 cut(s)	69, 86, 171
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 226
Bse118I	RCCGGY	2 cut(s)	86, 101
BseAI	TCCGGA	1 cut(s)	69
BseDI	CCNNGG	3 cut(s)	46, 225, 296
BseGI	GGATG	2 cut(s)	19, 111
BseLI	CCNNNNNNNGG	2 cut(s)	73, 226
BseRI	GAGGAG	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	4 cut(s)	10, 105, 152, 295
BshTI	ACCGGT	1 cut(s)	86
BsiSI	CCGG	5 cut(s)	11, 70, 87, 102, 172
BslFI	GGGAC	2 cut(s)	160, 347
BslI	CCNNNNNNNGG	2 cut(s)	73, 226
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	160, 347
BsnI	GGCC	4 cut(s)	10, 105, 152, 295
Bso31I	GGTCTC	1 cut(s)	131
Bsp13I	TCCGGA	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	55, 165
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	1 cut(s)	199
BspANI	GGCC	4 cut(s)	10, 105, 152, 295
BspEI	TCCGGA	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	176, 362
BspPI	GGATC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	2 cut(s)	86, 101
BssAI	RCCGGY	2 cut(s)	86, 101
BssECI	CCNNGG	3 cut(s)	46, 225, 296
BssMI	GATC	2 cut(s)	55, 165
BssT1I	CCWWGG	3 cut(s)	46, 225, 296
BstDSI	CCRYGG	1 cut(s)	225
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	19, 111
BstFNI	CGCG	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	58, 168
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	55, 165
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstUI	CGCG	1 cut(s)	201
BstV2I	GAAGAC	2 cut(s)	223, 251
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	4 cut(s)	10, 105, 152, 295
BtgI	CCRYGG	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	19, 111
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	2 cut(s)	86, 101
Cfr13I	GGNCC	2 cut(s)	174, 255
CspAI	ACCGGT	1 cut(s)	86
CviAII	CATG	5 cut(s)	6, 221, 226, 259, 305
CviJI	RGCY	7 cut(s)	10, 18, 81, 105, 152, 217, 295
CviKI_1	RGCY	7 cut(s)	10, 18, 81, 105, 152, 217, 295
DpnI	GATC	2 cut(s)	57, 167
DpnII	GATC	2 cut(s)	55, 165
EaeI	YGGCCR	1 cut(s)	8
Eco130I	CCWWGG	3 cut(s)	46, 225, 296
Eco147I	AGGCCT	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	174, 255
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoT14I	CCWWGG	3 cut(s)	46, 225, 296
ErhI	CCWWGG	3 cut(s)	46, 225, 296
FaeI	CATG	5 cut(s)	9, 224, 229, 262, 308
FaiI	YATR	8 cut(s)	7, 222, 227, 260, 271, 273, 275, 306
FaqI	GGGAC	2 cut(s)	160, 347
FatI	CATG	5 cut(s)	5, 220, 225, 258, 304
FokI	GGATG	2 cut(s)	26, 98
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	4 cut(s)	10, 105, 152, 295
HapII	CCGG	5 cut(s)	11, 70, 87, 102, 172
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	5 cut(s)	9, 224, 229, 262, 308
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HpaII	CCGG	5 cut(s)	11, 70, 87, 102, 172
HphI	GGTGA	1 cut(s)	91
Hpy188I	TCNGA	3 cut(s)	136, 211, 365
Hpy188III	TCNNGA	2 cut(s)	70, 163
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	22, 67, 163, 304
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	5 cut(s)	9, 224, 229, 262, 308
HspAI	GCGC	1 cut(s)	201
Kpn2I	TCCGGA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	55, 165
LpnPI	CCDG	6 cut(s)	24, 83, 100, 115, 185, 326
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	2 cut(s)	57, 167
MboI	GATC	2 cut(s)	55, 165
MboII	GAAGA	3 cut(s)	160, 223, 256
MflI	RGATCY	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	306
MroI	TCCGGA	1 cut(s)	69
MseI	TTAA	1 cut(s)	63
MspI	CCGG	5 cut(s)	11, 70, 87, 102, 172
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	292
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	2 cut(s)	55, 165
NlaIII	CATG	5 cut(s)	9, 224, 229, 262, 308
NlaIV	GGNNCC	2 cut(s)	176, 362
NmuCI	GTSAC	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	226
PinAI	ACCGGT	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	176, 362
PspPI	GGNCC	2 cut(s)	174, 255
PsuI	RGATCY	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	2 cut(s)	55, 165
Sau96I	GGNCC	2 cut(s)	174, 255
SfaNI	GCATC	1 cut(s)	295
SinI	GGWCC	2 cut(s)	174, 255
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	1 cut(s)	297
StuI	AGGCCT	1 cut(s)	152
StyI	CCWWGG	3 cut(s)	46, 225, 296
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	123, 147
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	145, 275, 293
TspGWI	ACGGA	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	174, 255
XagI	CCTNNNNNAGG	1 cut(s)	71
XmaJI	CCTAGG	1 cut(s)	296
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.