Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014005

Physical Location & Seq

Genomic Coordinates Forward (+)

45963105 .. 45967946

Gene Structure 4842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00251980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3078 bp

ATGGTCCAATTCCACGAGCACATAATCGCCGACCTGCTCGACGAGCCGCCCAACGGCACCGGCCTGGTGATCCTCTCCTCCGGCCTCTCCCTCCCCAAACTCATCTCCTCCCTTCTCCTCCTCCACACTCCTTCTCAGGGCACCCTCCTCATCCTCTCTCCCCACAACCCCTCCTCCTTCAAATCCCAACTCCTCCACCACTACCACCCTAACCCCATCCCCGAAATCACCGCCGACCTCCCCGCCACCCACCGCAACTCCCTCTACTCCTCCGGCAACCCCTTCTTCATCACCCCCCGCATCCTCATCGTCGATCTGCTCACCTCCCGAATCCCGACCTCCCAGATCGCCGGAATCGTCATCCCCGCCGTCCATTCCCTCTCCGAGACCTCCACCGAGGCCTTCATCGTCAGGATCTTCCGGTCGCTCAACAAGACGGCGTTCGTCCGCGCGTTTTCCGATAAGCCGCACGCGATGGTCTCCGGGTTCGCGAAGACGGAGAGGACGATGAAGTGTTTGTATATGAGGAGATTGCATCTGTGGCCGAGGTTCCACGTAGAGGTTTCGAATGAGCTGGAGAGGGACGCGCCGGAGGTGGTGGATATTAGGGTTCCGATGACAAAATACATGGTGGGGATTCAGAAGGCGATTATTGAGGTCATGGATGCTTGCTTGAAGGAGATGAGGAAGACGAACAAGGTCGATGTGGAGGACTTGACTGTCGAAAACGGGCTGTTTAAGTCGTTTGATGAGATTGTGAGGAGGCAATTGGATCCGATTTGGCATACATTGGGGAAGAAGACCAAGCAGCTTGTCTCTGACTTGAAGACTCTCAGGAAGCTCTTGGATTACCTTGTTAGATATGATGCGGTAACTTATTTGAAGTACTTGGATACACTGAGAGTGTCGGAGAGTTTTCGATCGGTCTGGATATTTGCAGAGTCGAGTTATAAAATATTTGAGTATGCAAAGAAAAGGGTTTATCGATTTGTCACATCCGGTGGGGTGGATTTGAGTGAGCAGAGTAAGAGTTTGAAGGGCAAGAAGAGAAAGTTGAAGGGGGATGATGATAAAGAGCAAGATGTTGGTGGCACTTCAACGACCAGTGTAGTTTTAGATGAAGTTTTAGAGGAGGCACCAAAGTGGAAGGTCTTACGTGAGGTTCTAGAAGAGATAGAAGAAGAAAGACGAAAACATGCTTCATCAAGAGAAGAACTTCTGGTCGAAGATGATGTAGAAGATAGTGACATTGTTCTAGTGGCATGCAAAGATGAACGATCATGCATGCAGCTTGAGGATCTCATCAATAATGGTCCACAAAAGTTTTGTTCTTTTGGACATGTTTTCTTATTCTCGATGAAAAATGGGTGCAAAGATAGAGAGAAAGGAAGTGATATGCTACTGTCATGCGGGAAGAATGGGAAAACTACTTGTTGGGCAAGGGACAACTGCGTGACTTGCATACACGCTATAAAAAGAAACCAAAGAAAGCCAAAGGTTTTGGTATTCTTGATGGAGTTGTTCAGACAACCGCCCCAGAATACAGAAGCTAGCAGCATAAACAAGCAGGAACATGATGCTCTTTTGGCTGCAGCTTCTGCAATTAGAAATCGAGCTAAAAAAGAAGATGCTATTGGAGATGATCCCCAGCCTATTGTTAGTGGCCGAGGACGTGGAAAGGGAAAGGGAAAAGTGGTTCCTGCGAAGTCTCCACAAAATACAGAAGCTAGCAGTGTAAACAAGCAGGAACCTGCTTCAGGATCAGAAGTTAGAAATCAAACTAAAAAAGATAATGCTGTTGGAGATGATCCTCAACTTCTTGTTGGGAAGGGGCGCGGAAAGGGAAAAGGAAAAGTACGGAACAGAAAAGGCGCAGCTAGTGTTGAGACTTTGGGGAATAAAGTTGGCAGTGATGATAAAAAGGATGAAACAAATGATACACTAGTTATTTCTGATTCAGAAAATGAAGGCCACGCAGATGAAATCCATCAGGCGGTGACAGCTGATTCCAGTGAAGCTGCTTTCCAGGGTGACCCTGTAGGTGAAGGGGTTTTGAGGAAGCATACTGGACAGCCTCATTCTACTGAATCGAGAACTGCTAAGCCACTACCTACGGTGCACTTTTATGCTCTCGAAAGTGGTCAACCTATACTTGACATTTTGAGACCTTCTACGATTGTTGTTTACCATCCAGATATGACTTTTGTCAGGGAAATTGAAGTCCATAAAGCTGAGAATCCCTCAAAGAAGTTGAAAGTATATTTTCTTTTCTATGAAGATTCTTCTGAGGGTCAAAAGTTTGAGGCAAGCATTAGAAGGGAGAATGGAGCATTTGAATCTTTGATCAGGCAGAAGTCACTGATGATGATACCAGTTGATCAGGTCATAGTGGACATGAGGGAGTTCATGAGCAGCCTTCCAAACGTTCTCCACCAGAAGGGCATGCGCATAATACCTGTGACCTTGGAAGTTGGGGATTATATCCTTTCTCCATTAATATGTGTGGAGAGAAAGAGTATTCAAGATCTTTTTATGAGCTTCACATCAGGCCGCCTATATAACCAAGTCGAGACTATGGTGCGCTACTATAGAATACCTGTCCTCCTGATTGAATTTTCACAAGACAAAAGCTTCTCATTTCAGTCTGCAAGTGATATTGGGGATGATGTCACACCAAATAGTATTATTTCTAAGTTGTCGTTGCTTGTTCTACATTTCCCTCGGCTACGAATCATCTGGTCTCGCAGTCTGTATGCTACTGCTGAAATCTTCACTACTCTCAAGGCAAATCAGGATGAACCTGACGAGACAAAAGCAACTAGAGTTGGTGTACCCTCTGAAGATGGGATCATAGAAGATGACGTGAGGGCTGAAAATTACAATACATCTGCCGTGGAGTTCTTGAGGCGACTCCCAGGTGTGACAGATTCAAATTACAGGGCAATAATGGATGGTTGTAAGAGTTTGGCAGAACTTGCTCTTATGCCAGTGGAGAGTCTAGCGGAATTAATGGGTGGTCATAAAGCAGCTCGGACGTTGAGAGAGTTCCTTGATGCCAAATATCCAACCCTGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000014 GO:0000109 GO:0000110 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006296 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0022402 GO:0022414 GO:0032991 GO:0033554 GO:0033683 GO:0034641 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901255 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03420 ko03460 map03420 map03460

Pfam Domains

Protein Families

ERCC4 Pro_isomerase

Protein Analysis

1025

Amino Acids

115.07

Weight (kDa)

6.99

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERCC4	PF02732	797 - 926	1.6e-28	ERCC4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41150 AT5G41150
fragaria_vesca	FvH4_5g20470
malus_domestica	MD06G1046600.v1.1
prunus_persica	Prupe.5G054900_v2.0.a1 Prupe.5G054900_v2.0.a1
pyrus_communis	pycom06g03930
rosa_chinensis	RchiOBHm_Chr7g0205791
rosa_laevigata	RLG00000003354
rosa_multiflora	Rmu_sc0001336.1_g000030
rosa_roxburghii	Rroxscaffold_3G00251980
rosa_rugosa	Rorug07G0093100
rosa_samantha	Rh7AG224600 Rh7BG219800 Rh7CG238300 Rh7DG231300
rosa_wichuraiana	Rw7G019370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
AasI	GACNNNNNNGTC	1 cut(s)	719
Acc16I	TGCGCA	1 cut(s)	2447
Acc36I	ACCTGC	2 cut(s)	42, 1759
AccB1I	GGYRCC	3 cut(s)	56, 140, 1135
AccII	CGCG	6 cut(s)	450, 452, 473, 491, 587, 1836
AclI	AACGTT	1 cut(s)	2424
AclWI	GGATC	9 cut(s)	64, 422, 767, 780, 1305, 1637, 1768, 1802, 2855
AcoI	YGGCCR	2 cut(s)	542, 1663
AcsI	RAATTY	1 cut(s)	2612
AcuI	CTGAAG	2 cut(s)	1740, 2859
AfaI	GTAC	3 cut(s)	887, 1857, 2832
AfiI	CCNNNNNNNGG	6 cut(s)	53, 137, 559, 1757, 1993, 2437
AflIII	ACRYGT	1 cut(s)	1339
AhlI	ACTAGT	1 cut(s)	1942
AjiI	CACGTC	2 cut(s)	1673, 2863
AjnI	CCWGG	3 cut(s)	63, 2025, 2914
AjuI	GAANNNNNNNTTGG	2 cut(s)	1617, 1649
AleI	CACNNNNGTG	1 cut(s)	1141
AloI	GAACNNNNNNTCC	2 cut(s)	1680, 1712
Alw21I	GWGCWC	2 cut(s)	21, 2121
Alw26I	GTCTC	9 cut(s)	380, 484, 820, 1713, 1880, 2158, 2564, 2745, 2801
Alw44I	GTGCAC	1 cut(s)	2117
AlwI	GGATC	9 cut(s)	64, 422, 767, 780, 1305, 1637, 1768, 1802, 2855
AlwNI	CAGNNNCTG	1 cut(s)	1598
AoxI	GGCC	7 cut(s)	61, 82, 399, 542, 1663, 1969, 2548
ApaLI	GTGCAC	1 cut(s)	2117
ApeKI	GCWGC	9 cut(s)	808, 1288, 1554, 1589, 1592, 1874, 2018, 2412, 3026
ApoI	RAATTY	1 cut(s)	2612
AseI	ATTAAT	2 cut(s)	2495, 3008
Asp700I	GAANNNNTTC	1 cut(s)	1215
AspLEI	GCGC	6 cut(s)	452, 589, 1836, 1874, 2448, 2583
AspS9I	GGNCC	2 cut(s)	4, 1313
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	7 cut(s)	79, 220, 283, 313, 2008, 2042, 2054
AsuII	TTCGAA	1 cut(s)	566
AsuNHI	GCTAGC	2 cut(s)	1550, 1727
AvaII	GGWCC	2 cut(s)	4, 1313
BaeGI	GKGCMC	2 cut(s)	143, 2121
BaeI	ACNNNNGTAYC	2 cut(s)	1929, 1962
BamHI	GGATCC	1 cut(s)	772
BanI	GGYRCC	3 cut(s)	56, 140, 1135
BauI	CACGAG	1 cut(s)	14
BbsI	GAAGAC	4 cut(s)	500, 695, 806, 833
Bbv12I	GWGCWC	2 cut(s)	21, 2121
BbvI	GCAGC	9 cut(s)	820, 1300, 1566, 1576, 1604, 1886, 2005, 2424, 3038
BccI	CCATC	7 cut(s)	224, 469, 1507, 1995, 2196, 2837, 2945
BceAI	ACGGC	4 cut(s)	70, 353, 453, 2876
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BciT130I	CCWGG	3 cut(s)	65, 2027, 2916
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	2 cut(s)	2343, 2377
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	9 cut(s)	380, 484, 820, 1713, 1880, 2158, 2564, 2745, 2801
BcuI	ACTAGT	1 cut(s)	1942
BfaI	CTAG	8 cut(s)	1166, 1256, 1551, 1728, 1878, 1943, 2820, 2999
BfmI	CTRYAG	3 cut(s)	1590, 2037, 2587
BfuAI	ACCTGC	2 cut(s)	42, 1759
BfuI	GTATCC	1 cut(s)	886
BglII	AGATCT	1 cut(s)	2524
BlpI	GCTNAGC	1 cut(s)	2100
BmcAI	AGTACT	1 cut(s)	887
Bme1390I	CCNGG	4 cut(s)	65, 484, 2027, 2916
Bme18I	GGWCC	2 cut(s)	4, 1313
BmgBI	CACGTC	2 cut(s)	1673, 2863
BmgT120I	GGNCC	2 cut(s)	4, 1313
BmiI	GGNNCC	8 cut(s)	58, 142, 551, 612, 774, 1137, 1698, 1749
BmrFI	CCNGG	4 cut(s)	65, 484, 2027, 2916
BmsI	GCATC	7 cut(s)	309, 544, 655, 856, 1567, 1618, 3043
BmtI	GCTAGC	2 cut(s)	1554, 1731
BoxI	GACNNNNGTC	1 cut(s)	2204
BpiI	GAAGAC	4 cut(s)	500, 695, 806, 833
BplI	GAGNNNNNCTC	2 cut(s)	2225, 2257
BpmI	CTGGAG	1 cut(s)	596
Bpu1102I	GCTNAGC	1 cut(s)	2100
Bpu14I	TTCGAA	1 cut(s)	566
BpuEI	CTTGAG	3 cut(s)	1313, 2765, 2923
BpuMI	CCSGG	1 cut(s)	484
Bsa29I	ATCGAT	1 cut(s)	985
BsaAI	YACGTR	2 cut(s)	556, 1157
BsaI	GGTCTC	4 cut(s)	380, 484, 2158, 2745
BsaJI	CCNNGG	8 cut(s)	396, 545, 1666, 2026, 2463, 2720, 2892, 2914
BsaWI	WCCGGW	2 cut(s)	420, 998
BsaXI	ACNNNNNCTCC	8 cut(s)	155, 158, 185, 188, 242, 272, 2586, 2616
Bsc4I	CCNNNNNNNGG	6 cut(s)	53, 137, 559, 1757, 1993, 2437
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	5 cut(s)	1104, 2010, 2071, 2372, 2987
BseBI	CCWGG	3 cut(s)	65, 2027, 2916
BseCI	ATCGAT	1 cut(s)	985
BseDI	CCNNGG	8 cut(s)	396, 545, 1666, 2026, 2463, 2720, 2892, 2914
BseLI	CCNNNNNNNGG	6 cut(s)	53, 137, 559, 1757, 1993, 2437
BseMII	CTCAG	5 cut(s)	149, 847, 890, 2223, 2277
BseNI	ACTGG	5 cut(s)	1104, 2010, 2071, 2372, 2987
BseSI	GKGCMC	2 cut(s)	143, 2121
BseXI	GCAGC	9 cut(s)	820, 1300, 1566, 1576, 1604, 1886, 2005, 2424, 3038
BseYI	CCCAGC	1 cut(s)	1647
Bsh1236I	CGCG	6 cut(s)	450, 452, 473, 491, 587, 1836
Bsh1285I	CGRYCG	2 cut(s)	425, 923
BshFI	GGCC	7 cut(s)	63, 84, 401, 544, 1665, 1971, 2550
BshNI	GGYRCC	3 cut(s)	56, 140, 1135
BshVI	ATCGAT	1 cut(s)	985
BsiEI	CGRYCG	2 cut(s)	425, 923
BsiHKAI	GWGCWC	2 cut(s)	21, 2121
BsiSI	CCGG	8 cut(s)	60, 81, 273, 351, 421, 483, 590, 999
BslFI	GGGAC	2 cut(s)	596, 1457
BslI	CCNNNNNNNGG	6 cut(s)	53, 137, 559, 1757, 1993, 2437
BsmAI	GTCTC	9 cut(s)	380, 484, 820, 1713, 1880, 2158, 2564, 2745, 2801
BsmFI	GGGAC	2 cut(s)	596, 1457
BsnI	GGCC	7 cut(s)	63, 84, 401, 544, 1665, 1971, 2550
Bso31I	GGTCTC	4 cut(s)	380, 484, 2158, 2745
Bsp119I	TTCGAA	1 cut(s)	566
Bsp1286I	GDGCHC	3 cut(s)	21, 143, 2121
Bsp1720I	GCTNAGC	1 cut(s)	2100
Bsp68I	TCGCGA	1 cut(s)	491
BspANI	GGCC	7 cut(s)	63, 84, 401, 544, 1665, 1971, 2550
BspCNI	CTCAG	5 cut(s)	148, 846, 891, 2224, 2278
BspDI	ATCGAT	1 cut(s)	985
BspFNI	CGCG	6 cut(s)	450, 452, 473, 491, 587, 1836
BspHI	TCATGA	1 cut(s)	2406
BspLI	GGNNCC	8 cut(s)	58, 142, 551, 612, 774, 1137, 1698, 1749
BspMAI	CTGCAG	1 cut(s)	1594
BspMI	ACCTGC	2 cut(s)	42, 1759
BspOI	GCTAGC	2 cut(s)	1554, 1731
BspPI	GGATC	9 cut(s)	64, 422, 767, 780, 1305, 1637, 1768, 1802, 2855
BspT104I	TTCGAA	1 cut(s)	566
BspT107I	GGYRCC	3 cut(s)	56, 140, 1135
BspTNI	GGTCTC	4 cut(s)	380, 484, 2158, 2745
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	5 cut(s)	1104, 2010, 2071, 2372, 2987
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	8 cut(s)	396, 545, 1666, 2026, 2463, 2720, 2892, 2914
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	2463
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	3 cut(s)	65, 2027, 2916
Bst4CI	ACNGT	3 cut(s)	721, 1404, 2116
Bst6I	CTCTTC	2 cut(s)	1040, 1164
BstAPI	GCANNNNNTGC	2 cut(s)	1598, 2975
BstBAI	YACGTR	2 cut(s)	556, 1157
BstBI	TTCGAA	1 cut(s)	566
BstC8I	GCNNGC	8 cut(s)	471, 670, 1264, 1286, 1552, 1729, 2308, 2444
BstDEI	CTNAG	7 cut(s)	135, 833, 899, 2100, 2232, 2286, 2691
BstDSI	CCRYGG	1 cut(s)	2892
BstEII	GGTNACC	1 cut(s)	2030
BstENI	CCTNNNNNAGG	1 cut(s)	1755
BstFNI	CGCG	6 cut(s)	450, 452, 473, 491, 587, 1836
BstHHI	GCGC	6 cut(s)	452, 589, 1836, 1874, 2448, 2583
BstMAI	GTCTC	9 cut(s)	380, 484, 820, 1713, 1880, 2158, 2564, 2745, 2801
BstMCI	CGRYCG	2 cut(s)	425, 923
BstMWI	GCNNNNNNNGC	7 cut(s)	43, 541, 1458, 1586, 1598, 2000, 2975
BstNI	CCWGG	3 cut(s)	65, 2027, 2916
BstNSI	RCATGY	5 cut(s)	1199, 1266, 1288, 1343, 2446
BstPAI	GACNNNNGTC	1 cut(s)	2204
BstPI	GGTNACC	1 cut(s)	2030
BstSCI	CCNGG	4 cut(s)	63, 482, 2025, 2914
BstSFI	CTRYAG	3 cut(s)	1590, 2037, 2587
BstSLI	GKGCMC	2 cut(s)	143, 2121
BstUI	CGCG	6 cut(s)	450, 452, 473, 491, 587, 1836
BstV1I	GCAGC	9 cut(s)	820, 1300, 1566, 1576, 1604, 1886, 2005, 2424, 3038
BstV2I	GAAGAC	4 cut(s)	500, 695, 806, 833
BstX2I	RGATCY	4 cut(s)	414, 772, 1297, 2524
BstYI	RGATCY	4 cut(s)	414, 772, 1297, 2524
Bsu15I	ATCGAT	1 cut(s)	985
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	7 cut(s)	63, 84, 401, 544, 1665, 1971, 2550
BsuTUI	ATCGAT	1 cut(s)	985
BtgI	CCRYGG	1 cut(s)	2892
BtgZI	GCGATG	1 cut(s)	488
BtrI	CACGTC	2 cut(s)	1673, 2863
BtsI	GCAGTG	2 cut(s)	1738, 1915
BtsIMutI	CAGTG	7 cut(s)	896, 1111, 1738, 1915, 2017, 2357, 2994
BtuMI	TCGCGA	1 cut(s)	491
BveI	ACCTGC	2 cut(s)	42, 1759
Cac8I	GCNNGC	8 cut(s)	471, 670, 1264, 1286, 1552, 1729, 2308, 2444
CaiI	CAGNNNCTG	1 cut(s)	1598
CciI	TCATGA	1 cut(s)	2406
CfoI	GCGC	6 cut(s)	452, 589, 1836, 1874, 2448, 2583
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	4, 1313
ClaI	ATCGAT	1 cut(s)	985
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	3 cut(s)	886, 1856, 2831
CviQI	GTAC	3 cut(s)	886, 1856, 2831
DdeI	CTNAG	7 cut(s)	135, 833, 899, 2100, 2232, 2286, 2691
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
EaeI	YGGCCR	2 cut(s)	542, 1663
Eam1104I	CTCTTC	2 cut(s)	1040, 1164
EarI	CTCTTC	2 cut(s)	1040, 1164
Eco130I	CCWWGG	1 cut(s)	2463
Eco147I	AGGCCT	1 cut(s)	401
Eco31I	GGTCTC	4 cut(s)	380, 484, 2158, 2745
Eco47I	GGWCC	2 cut(s)	4, 1313
Eco57I	CTGAAG	2 cut(s)	1740, 2859
Eco91I	GGTNACC	1 cut(s)	2030
EcoNI	CCTNNNNNAGG	1 cut(s)	1755
EcoO65I	GGTNACC	1 cut(s)	2030
EcoRII	CCWGG	3 cut(s)	63, 2025, 2914
EcoT14I	CCWWGG	1 cut(s)	2463
EcoT22I	ATGCAT	1 cut(s)	1286
ErhI	CCWWGG	1 cut(s)	2463
FaqI	GGGAC	2 cut(s)	596, 1457
FauI	CCCGC	4 cut(s)	250, 305, 373, 1403
FbaI	TGATCA	2 cut(s)	2343, 2377
FspAI	RTGCGCAY	1 cut(s)	2447
FspBI	CTAG	8 cut(s)	1166, 1256, 1551, 1728, 1878, 1943, 2820, 2999
FspI	TGCGCA	1 cut(s)	2447
GlaI	GCGC	6 cut(s)	451, 588, 1835, 1873, 2447, 2582
GsaI	CCCAGC	1 cut(s)	1651
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	7 cut(s)	63, 84, 401, 544, 1665, 1971, 2550
HapII	CCGG	8 cut(s)	60, 81, 273, 351, 421, 483, 590, 999
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	6 cut(s)	452, 589, 1836, 1874, 2448, 2583
Hin6I	GCGC	6 cut(s)	450, 587, 1834, 1872, 2446, 2581
HinP1I	GCGC	6 cut(s)	450, 587, 1834, 1872, 2446, 2581
HincII	GTYRAC	1 cut(s)	2144
HindII	GTYRAC	1 cut(s)	2144
HindIII	AAGCTT	1 cut(s)	2629
HpaII	CCGG	8 cut(s)	60, 81, 273, 351, 421, 483, 590, 999
HphI	GGTGA	7 cut(s)	79, 220, 283, 313, 2008, 2042, 2054
Hpy166II	GTNNAC	7 cut(s)	1316, 1738, 2119, 2144, 2185, 2392, 2831
Hpy8I	GTNNAC	7 cut(s)	1316, 1738, 2119, 2144, 2185, 2392, 2831
Hpy99I	CGWCG	2 cut(s)	44, 314
HpyCH4III	ACNGT	3 cut(s)	721, 1404, 2116
HpyCH4IV	ACGT	6 cut(s)	555, 1156, 1672, 2424, 2862, 3035
HpyF10VI	GCNNNNNNNGC	7 cut(s)	43, 541, 1458, 1586, 1598, 2000, 2975
HpyF3I	CTNAG	7 cut(s)	135, 833, 899, 2100, 2232, 2286, 2691
HpySE526I	ACGT	6 cut(s)	555, 1156, 1672, 2424, 2862, 3035
HspAI	GCGC	6 cut(s)	450, 587, 1834, 1872, 2446, 2581
Ksp22I	TGATCA	2 cut(s)	2343, 2377
LmnI	GCTCC	1 cut(s)	2327
Lsp1109I	GCAGC	9 cut(s)	820, 1300, 1566, 1576, 1604, 1886, 2005, 2424, 3038
LweI	GCATC	7 cut(s)	309, 544, 655, 856, 1567, 1618, 3043
MaeI	CTAG	8 cut(s)	1166, 1256, 1551, 1728, 1878, 1943, 2820, 2999
MaeII	ACGT	6 cut(s)	555, 1156, 1672, 2424, 2862, 3035
MfeI	CAATTG	1 cut(s)	767
MflI	RGATCY	4 cut(s)	414, 772, 1297, 2524
MhlI	GDGCHC	3 cut(s)	21, 143, 2121
MluCI	AATT	8 cut(s)	8, 767, 1602, 2214, 2612, 2875, 2932, 3005
MlyI	GAGTC	4 cut(s)	823, 950, 2904, 3004
MmeI	TCCRAC	2 cut(s)	888, 1780
Mph1103I	ATGCAT	1 cut(s)	1286
MroXI	GAANNNNTTC	1 cut(s)	1215
MseI	TTAA	3 cut(s)	738, 2495, 3008
MslI	CAYNNNNRTG	4 cut(s)	1141, 1977, 2124, 2497
MspA1I	CMGCKG	1 cut(s)	2003
MspI	CCGG	8 cut(s)	60, 81, 273, 351, 421, 483, 590, 999
MspR9I	CCNGG	4 cut(s)	65, 484, 2027, 2916
MunI	CAATTG	1 cut(s)	767
MvaI	CCWGG	3 cut(s)	65, 2027, 2916
MvnI	CGCG	6 cut(s)	450, 452, 473, 491, 587, 1836
MwoI	GCNNNNNNNGC	7 cut(s)	43, 541, 1458, 1586, 1598, 2000, 2975
NciI	CCSGG	1 cut(s)	484
NheI	GCTAGC	2 cut(s)	1550, 1727
NlaIV	GGNNCC	8 cut(s)	58, 142, 551, 612, 774, 1137, 1698, 1749
NmeAIII	GCCGAG	3 cut(s)	570, 1691, 2701
NmuCI	GTSAC	9 cut(s)	991, 1244, 1453, 1996, 2030, 2355, 2458, 2668, 2920
NruI	TCGCGA	1 cut(s)	491
NsbI	TGCGCA	1 cut(s)	2447
NsiI	ATGCAT	1 cut(s)	1286
NspI	RCATGY	5 cut(s)	1199, 1266, 1288, 1343, 2446
NspV	TTCGAA	1 cut(s)	566
OliI	CACNNNNGTG	1 cut(s)	1141
PaeI	GCATGC	3 cut(s)	1266, 1288, 2446
PagI	TCATGA	1 cut(s)	2406
PceI	AGGCCT	1 cut(s)	401
PciI	ACATGT	1 cut(s)	1339
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 503
PdmI	GAANNNNTTC	1 cut(s)	1215
Ple19I	CGATCG	1 cut(s)	923
PleI	GAGTC	4 cut(s)	823, 949, 2904, 3003
PpsI	GAGTC	4 cut(s)	823, 949, 2904, 3003
Ppu21I	YACGTR	2 cut(s)	556, 1157
PscI	ACATGT	1 cut(s)	1339
PshAI	GACNNNNGTC	1 cut(s)	2204
PshBI	ATTAAT	2 cut(s)	2495, 3008
PsiI	TTATAA	1 cut(s)	951
Psp1406I	AACGTT	1 cut(s)	2424
Psp6I	CCWGG	3 cut(s)	63, 2025, 2914
PspEI	GGTNACC	1 cut(s)	2030
PspFI	CCCAGC	1 cut(s)	1647
PspGI	CCWGG	3 cut(s)	63, 2025, 2914
PspN4I	GGNNCC	8 cut(s)	58, 142, 551, 612, 774, 1137, 1698, 1749
PspPI	GGNCC	2 cut(s)	4, 1313
PstI	CTGCAG	1 cut(s)	1594
PstNI	CAGNNNCTG	1 cut(s)	1598
PsuI	RGATCY	4 cut(s)	414, 772, 1297, 2524
PvuI	CGATCG	1 cut(s)	923
PvuII	CAGCTG	1 cut(s)	2003
RruI	TCGCGA	1 cut(s)	491
RsaI	GTAC	3 cut(s)	887, 1857, 2832
RsaNI	GTAC	3 cut(s)	886, 1856, 2831
RseI	CAYNNNNRTG	4 cut(s)	1141, 1977, 2124, 2497
SaqAI	TTAA	3 cut(s)	738, 2495, 3008
Sau96I	GGNCC	2 cut(s)	4, 1313
ScaI	AGTACT	1 cut(s)	887
SchI	GAGTC	4 cut(s)	823, 950, 2904, 3004
ScrFI	CCNGG	4 cut(s)	65, 484, 2027, 2916
SduI	GDGCHC	3 cut(s)	21, 143, 2121
SfaNI	GCATC	7 cut(s)	309, 544, 655, 856, 1567, 1618, 3043
SfcI	CTRYAG	3 cut(s)	1590, 2037, 2587
SfuI	TTCGAA	1 cut(s)	566
SinI	GGWCC	2 cut(s)	4, 1313
SmiMI	CAYNNNNRTG	4 cut(s)	1141, 1977, 2124, 2497
SmlI	CTYRAG	3 cut(s)	1292, 2780, 2902
SmoI	CTYRAG	3 cut(s)	1292, 2780, 2902
SpeI	ACTAGT	1 cut(s)	1942
SphI	GCATGC	3 cut(s)	1266, 1288, 2446
Sse9I	AATT	8 cut(s)	8, 767, 1602, 2214, 2612, 2875, 2932, 3005
SseBI	AGGCCT	1 cut(s)	401
SspI	AATATT	1 cut(s)	957
SspMI	CTAG	8 cut(s)	1166, 1256, 1551, 1728, 1878, 1943, 2820, 2999
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	4 cut(s)	63, 482, 2025, 2914
StyI	CCWWGG	1 cut(s)	2463
TaaI	ACNGT	3 cut(s)	721, 1404, 2116
TaiI	ACGT	6 cut(s)	558, 1159, 1675, 2427, 2865, 3038
TaqII	GACCGA	1 cut(s)	913
TasI	AATT	8 cut(s)	8, 767, 1602, 2214, 2612, 2875, 2932, 3005
TatI	WGTACW	1 cut(s)	885
TauI	GCSGC	3 cut(s)	49, 469, 2553
Tru1I	TTAA	3 cut(s)	738, 2495, 3008
Tru9I	TTAA	3 cut(s)	738, 2495, 3008
TscAI	CASTG	7 cut(s)	903, 1111, 1738, 1915, 2017, 2364, 2994
TseFI	GTSAC	9 cut(s)	991, 1244, 1453, 1996, 2030, 2355, 2458, 2668, 2920
TseI	GCWGC	9 cut(s)	808, 1288, 1554, 1589, 1592, 1874, 2018, 2412, 3026
Tsp45I	GTSAC	9 cut(s)	991, 1244, 1453, 1996, 2030, 2355, 2458, 2668, 2920
TspGWI	ACGGA	2 cut(s)	512, 1873
TspRI	CASTG	7 cut(s)	903, 1111, 1738, 1915, 2017, 2364, 2994
VneI	GTGCAC	1 cut(s)	2117
VpaK11BI	GGWCC	2 cut(s)	4, 1313
VspI	ATTAAT	2 cut(s)	2495, 3008
XagI	CCTNNNNNAGG	1 cut(s)	1755
XapI	RAATTY	1 cut(s)	2612
XbaI	TCTAGA	1 cut(s)	1165
XceI	RCATGY	5 cut(s)	1199, 1266, 1288, 1343, 2446
XmnI	GAANNNNTTC	1 cut(s)	1215
XspI	CTAG	8 cut(s)	1166, 1256, 1551, 1728, 1878, 1943, 2820, 2999
ZrmI	AGTACT	1 cut(s)	887
Zsp2I	ATGCAT	1 cut(s)	1286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.