Prupe.5G066100_v2.0.a1

DNA mismatch repair protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
8068625 .. 8077911
9287 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G066100.3

Sequence Viewer

Length: 2379 bp
ATGGAAGACGACGCAGGAGAGAGATCGAGCTTCGTTATCGGCCTCATCGAGAACAGAGCTAAGGAGGTGGGAGTTGCAGCCTTTGATTTAAGGTTGGCTTCTCTCCATCTTTCTCAATATATTGAAACTAGCAGCTCATATCAGAATACAAAAACTTTGCTGCAATTCTATGATCCTATGGTGATTATTGTTTCACCGAACAAGCTGGCACCTGATGGTATGGTTGGAGTTTCAGAATTGGCTGACAGATTTTATGCTACAGTCAAGAAGGTTGTAATGGCCCGTGGTTGCTTCGATGACACTAAGGGTGCCGTGCTGATTAAAAATCTAGCAGCAAAGGAACCTTCTGCACTAGGATTGGATACTTCTTACAAGCAGTATTACCTCTGCCTGGCTGCGGCAGCAGCTACAATTAAGTGGATAGAAGCAGAGAAAGGGGTCATCATTACAAACCACTCACTTTTGGTCACTTTTAATGGATCATTTGCCCATATGAATATTGACGCTACTAGTGTTCAAAATTTGGAAATCATTGAGCCACTTCATTCGACACTTTGGGGAACAAGCAACAAGAAAAGAAGTTTATTGAACATGCTCAAGACAACAAAAACTGTTGGAGGGTCTAGACTTCTTCGTGCCAATCTATTGCAGCCTTTAAAAGATATTGAAACTATAAATGCCCGTCTTGATTGCCTGGATGAGCTCATGAGCAATGAACAGCTGTTCTTTGGACTGGCTCAGGTTTTGAGTAAATTTCCTAAAGAGAGTGATAGGGTACTTTGTCACTTCTGCTTCAAGCCAAGGAAAATAACAAACAAAGTCATGGGTGTTGATTATGCTAGAAAAAGCCAGGTCTTGGTTTCAAGCATTATTCTCCTCAAAACTGCTCTAGATGCCTTGCCTTTACTCTCGAAGGTTCTTAAAGATGCAAAGTGTTTTCTTCTTGCAAATGTTTACAAGTCTGTATGTGAAAATGAGAAGTATGCTGCCGTTAGAAGGAGGATTGGAGAGGTGATTGATGAAGATGTGCTTCATGCACGGGTTCCTTTTGTAGCCCGCACACAGCAGTGTTTTGCTGTCAAGGCTGGAATTGATGGACTTTTGGATATTGCACGGAGATCATTTTGTGATACTAGTGAAGCTATACATAATCTTGCTAACAAGTATCGTGAAGATTTCAAGTTGCCCAATTTGAAACTCCCATTTAACAATAGGAGAGGGTTCTACTTTAGCATTCCACATAAGGACATTCAAGGGAAGCTTCCTAGTCAGTTCATTCAGGTATTGAAACATGGTAACAATTTACACTGCTCAACCTTGGAGCTTGCTTCTCTAAACGTTAGAAATAAGTCTGCAGCTGCAGAATGCTACATACGGACAGAAGTTTGCCTGGAAGAATTAGTAGATGCCATACGAGAGGATGTTTCTGCACTCACACTGCTTGCAGAGGTCTTATGCCTTTTGGATATGATCGTTAATTCATTTGCACATGCCATTTCCACAAAGCCAGTTGATCGTTACACCAGACCAGAATTTACAGATAATGGCCCCATGGCAATTGATGCTGGAAGACACCCTATCCTAGAGACCATACACAATGACTTTGTCCCCAACAATATATTTTTATCAGAGGCGTCAAACATGGTGCTTATCATAGGCCCAAACATGAGTGGAAAGAGTACTTACCTTCAACAAGTGTGTCTTATAGTTATTCTTGCTCAGATCGGTTGTTATGTTCCTGCTCGCTTCTCAACTCTAAGGGTTGTTGATCGTATATTTACAAGGATGGGTACAGTAGATAATCTTGAATCCAACTCTAGTACGTTCATGACAGAAATGAAAGAAACAGCTTTTATCATGCAAAATGTCTCCCAGAGGAGTCTGATTGTTATGGATGAACTTGGGAGGGCTACATCTTCTTCTGATGGATTTGCAATTGCTTGGAGCTGCTGCGAACATTTGTTATCACTGAAAGCGTATACTATATTTGCTACTCATATGGAGAACCTATCAGAACTAGTAACCGTCTATCCAAATGTGAAAATACTTCACTTTGATGTTGACATTAAAAATAATCGTCTAGATTTCAAGTTTCAACTGAAGGACGGAGCGAGGCATGTTCCGCACTATGGCCTTCTATTAGCAGAAGTGGCAGGACTGCCAAGCTCAGTAATTGAAACGGCCAGAAACATCACATCCAGGATCACAGAAAAGGAAGTGAAGAGGATGGAAGTAAACTGCCTTCAATACCAACCGATCCAGATGGCGTACCATGTTGCTCAGCGGCTGATATGTTTGAAGTACTCCAGCCAGGATGAGGATTCAATCAGAGAAGCACTGCATAATTTGAAAGACAGCTACATTCATGGAAGGCTGTAG

Protein Analysis

793

Amino Acids

88.75

Weight (kDa)

7.98

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 208, 308
AccB7I CCANNNNNTGG 1 cut(s) 856
AccI GTMKAC 1 cut(s) 1979
AciI CCGC 4 cut(s) 398, 1057, 2123, 2284
AclI AACGTT 1 cut(s) 1338
AclWI GGATC 4 cut(s) 167, 487, 2210, 2251
AcoI YGGCCR 1 cut(s) 2181
AcsI RAATTY 3 cut(s) 520, 752, 1532
AcuI CTGAAG 1 cut(s) 2120
AcyI GRCGYC 1 cut(s) 1634
AfaI GTAC 6 cut(s) 777, 1681, 1792, 1822, 2270, 2303
AfiI CCNNNNNNNGG 6 cut(s) 391, 397, 856, 996, 2129, 2317
AhlI ACTAGT 3 cut(s) 509, 1133, 2017
AjnI CCWGG 6 cut(s) 390, 693, 849, 1389, 2198, 2310
AleI CACNNNNGTG 1 cut(s) 1066
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 2 cut(s) 1580, 1873
AlwI GGATC 4 cut(s) 167, 487, 2210, 2251
AlwNI CAGNNNCTG 1 cut(s) 2287
AoxI GGCC 6 cut(s) 40, 279, 1546, 1657, 2131, 2181
ApoI RAATTY 3 cut(s) 520, 752, 1532
AspS9I GGNCC 3 cut(s) 280, 1547, 1658
AsuHPI GGTGA 3 cut(s) 186, 193, 1024
BanI GGYRCC 2 cut(s) 208, 308
BanII GRGCYC 1 cut(s) 705
BarI GAAGNNNNNNTAC 2 cut(s) 2226, 2258
BbsI GAAGAC 2 cut(s) 12, 1576
Bbv12I GWGCWC 1 cut(s) 705
BccI CCATC 7 cut(s) 114, 209, 1088, 1780, 1919, 2221, 2257
BceAI ACGGC 3 cut(s) 296, 974, 2196
BciT130I CCWGG 6 cut(s) 392, 695, 851, 1391, 2200, 2312
BciVI GTATCC 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 1580, 1873
BcuI ACTAGT 3 cut(s) 509, 1133, 2017
BfmI CTRYAG 4 cut(s) 258, 1353, 1359, 2375
BfuI GTATCC 1 cut(s) 355
BlpI GCTNAGC 1 cut(s) 2280
BmcAI AGTACT 2 cut(s) 1681, 2303
Bme1390I CCNGG 6 cut(s) 392, 695, 851, 1391, 2200, 2312
BmgT120I GGNCC 3 cut(s) 280, 1547, 1658
BmiI GGNNCC 5 cut(s) 210, 310, 342, 1044, 1549
BmrFI CCNGG 6 cut(s) 392, 695, 851, 1391, 2200, 2312
BmsI GCATC 4 cut(s) 883, 916, 1396, 1552
BpiI GAAGAC 2 cut(s) 12, 1576
BpmI CTGGAG 1 cut(s) 2290
Bpu10I CCTNAGC 2 cut(s) 60, 738
Bpu1102I GCTNAGC 1 cut(s) 2280
BpuEI CTTGAG 1 cut(s) 581
BsaHI GRCGYC 1 cut(s) 1634
BsaI GGTCTC 1 cut(s) 1580
BsaJI CCNNGG 4 cut(s) 283, 800, 1317, 1551
Bsc4I CCNNNNNNNGG 6 cut(s) 391, 397, 856, 996, 2129, 2317
Bse1I ACTGG 2 cut(s) 738, 1508
Bse3DI GCAATG 1 cut(s) 718
BseBI CCWGG 6 cut(s) 392, 695, 851, 1391, 2200, 2312
BseDI CCNNGG 4 cut(s) 283, 800, 1317, 1551
BseGI GGATG 7 cut(s) 703, 1426, 1791, 1900, 2195, 2232, 2320
BseLI CCNNNNNNNGG 6 cut(s) 391, 397, 856, 996, 2129, 2317
BseMI GCAATG 1 cut(s) 718
BseMII CTCAG 4 cut(s) 752, 1733, 2181, 2294
BseNI ACTGG 2 cut(s) 738, 1508
BseRI GAGGAG 2 cut(s) 866, 1891
BsgI GTGCAG 2 cut(s) 333, 1413
BshFI GGCC 6 cut(s) 42, 281, 1548, 1659, 2133, 2183
BshNI GGYRCC 2 cut(s) 208, 308
BsiHKAI GWGCWC 1 cut(s) 705
BslFI GGGAC 1 cut(s) 1592
BslI CCNNNNNNNGG 6 cut(s) 391, 397, 856, 996, 2129, 2317
BsmAI GTCTC 2 cut(s) 1580, 1873
BsmFI GGGAC 1 cut(s) 1592
BsmI GAATGC 2 cut(s) 1233, 1370
BsnI GGCC 6 cut(s) 42, 281, 1548, 1659, 2133, 2183
Bso31I GGTCTC 1 cut(s) 1580
Bsp1286I GDGCHC 1 cut(s) 705
Bsp1720I GCTNAGC 1 cut(s) 2280
Bsp19I CCATGG 1 cut(s) 1551
BspACI CCGC 4 cut(s) 398, 1057, 2123, 2284
BspANI GGCC 6 cut(s) 42, 281, 1548, 1659, 2133, 2183
BspCNI CTCAG 4 cut(s) 751, 1732, 2180, 2293
BspHI TCATGA 2 cut(s) 705, 1827
BspLI GGNNCC 5 cut(s) 210, 310, 342, 1044, 1549
BspMAI CTGCAG 2 cut(s) 1357, 1363
BspPI GGATC 4 cut(s) 167, 487, 2210, 2251
BspT107I GGYRCC 2 cut(s) 208, 308
BspTNI GGTCTC 1 cut(s) 1580
BsrDI GCAATG 1 cut(s) 718
BsrI ACTGG 2 cut(s) 738, 1508
BssECI CCNNGG 4 cut(s) 283, 800, 1317, 1551
BssNAI GTATAC 1 cut(s) 1980
BssNI GRCGYC 1 cut(s) 1634
BssT1I CCWWGG 3 cut(s) 800, 1317, 1551
Bst1107I GTATAC 1 cut(s) 1980
Bst2UI CCWGG 6 cut(s) 392, 695, 851, 1391, 2200, 2312
Bst4CI ACNGT 4 cut(s) 262, 613, 1795, 2026
Bst6I CTCTTC 1 cut(s) 2216
BstACI GRCGYC 1 cut(s) 1634
BstAPI GCANNNNNTGC 1 cut(s) 1562
BstC8I GCNNGC 5 cut(s) 207, 1057, 1326, 1443, 1744
BstDEI CTNAG 7 cut(s) 60, 303, 738, 1719, 1757, 2167, 2280
BstDSI CCRYGG 2 cut(s) 283, 1551
BstF5I GGATG 7 cut(s) 703, 1426, 1791, 1900, 2195, 2232, 2320
BstMAI GTCTC 2 cut(s) 1580, 1873
BstMWI GCNNNNNNNGC 7 cut(s) 401, 404, 893, 1082, 1562, 2122, 2150
BstNI CCWGG 6 cut(s) 392, 695, 851, 1391, 2200, 2312
BstNSI RCATGY 3 cut(s) 595, 1493, 2120
BstSCI CCNGG 6 cut(s) 390, 693, 849, 1389, 2198, 2310
BstSFI CTRYAG 4 cut(s) 258, 1353, 1359, 2375
BstV2I GAAGAC 2 cut(s) 12, 1576
BstZ17I GTATAC 1 cut(s) 1980
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 6 cut(s) 42, 281, 1548, 1659, 2133, 2183
BtgI CCRYGG 2 cut(s) 283, 1551
BtsCI GGATG 7 cut(s) 703, 1426, 1791, 1900, 2195, 2232, 2320
BtsI GCAGTG 4 cut(s) 1073, 1306, 1436, 2336
BtsIMutI CAGTG 5 cut(s) 1073, 1306, 1436, 1967, 2336
Cac8I GCNNGC 5 cut(s) 207, 1057, 1326, 1443, 1744
CaiI CAGNNNCTG 1 cut(s) 2287
CciI TCATGA 2 cut(s) 705, 1827
Cfr13I GGNCC 3 cut(s) 280, 1547, 1658
CseI GACGC 3 cut(s) 20, 512, 1623
Csp6I GTAC 6 cut(s) 776, 1680, 1791, 1821, 2269, 2302
CviQI GTAC 6 cut(s) 776, 1680, 1791, 1821, 2269, 2302
DdeI CTNAG 7 cut(s) 60, 303, 738, 1719, 1757, 2167, 2280
DraI TTTAAA 1 cut(s) 657
EaeI YGGCCR 1 cut(s) 2181
Eam1104I CTCTTC 1 cut(s) 2216
EarI CTCTTC 1 cut(s) 2216
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 3 cut(s) 800, 1317, 1551
Eco24I GRGCYC 1 cut(s) 705
Eco31I GGTCTC 1 cut(s) 1580
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 2120
EcoICRI GAGCTC 1 cut(s) 703
EcoRII CCWGG 6 cut(s) 390, 693, 849, 1389, 2198, 2310
EcoT14I CCWWGG 3 cut(s) 800, 1317, 1551
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 3 cut(s) 800, 1317, 1551
FalI AAGNNNNNCTT 8 cut(s) 82, 114, 1014, 1046, 1245, 1277, 1686, 1718
FaqI GGGAC 1 cut(s) 1592
FauI CCCGC 1 cut(s) 1064
FauNDI CATATG 2 cut(s) 492, 1998
FblI GTMKAC 1 cut(s) 1979
FokI GGATG 7 cut(s) 710, 1433, 1798, 1907, 2182, 2239, 2327
FriOI GRGCYC 1 cut(s) 705
GsuI CTGGAG 1 cut(s) 2290
HaeIII GGCC 6 cut(s) 42, 281, 1548, 1659, 2133, 2183
HgaI GACGC 3 cut(s) 20, 512, 1623
Hin1I GRCGYC 1 cut(s) 1634
HincII GTYRAC 1 cut(s) 2062
HindII GTYRAC 1 cut(s) 2062
HindIII AAGCTT 1 cut(s) 1259
HinfI GANTC 3 cut(s) 1808, 1879, 2321
HphI GGTGA 3 cut(s) 186, 193, 1024
Hpy166II GTNNAC 4 cut(s) 955, 1980, 2062, 2236
Hpy188I TCNGA 8 cut(s) 144, 235, 1630, 1722, 1884, 1924, 2014, 2330
Hpy8I GTNNAC 4 cut(s) 955, 1980, 2062, 2236
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 9 cut(s) 262, 354, 907, 990, 1697, 2095, 2144, 2252, 2364
HpyCH4III ACNGT 4 cut(s) 262, 613, 1795, 2026
HpyCH4IV ACGT 2 cut(s) 1338, 1823
HpyF10VI GCNNNNNNNGC 7 cut(s) 401, 404, 893, 1082, 1562, 2122, 2150
HpyF3I CTNAG 7 cut(s) 60, 303, 738, 1719, 1757, 2167, 2280
HpySE526I ACGT 2 cut(s) 1338, 1823
Hsp92I GRCGYC 1 cut(s) 1634
LmnI GCTCC 3 cut(s) 1321, 1944, 2108
LweI GCATC 4 cut(s) 883, 916, 1396, 1552
MaeII ACGT 2 cut(s) 1338, 1823
MaeIII GTNAC 5 cut(s) 466, 782, 1295, 1517, 2020
MfeI CAATTG 2 cut(s) 1557, 1935
MhlI GDGCHC 1 cut(s) 705
MlyI GAGTC 1 cut(s) 1888
MmeI TCCRAC 3 cut(s) 205, 595, 1836
MseI TTAA 9 cut(s) 89, 321, 414, 474, 656, 921, 1206, 1476, 2067
MslI CAYNNNNRTG 2 cut(s) 1066, 2055
MspA1I CMGCKG 3 cut(s) 721, 1358, 2284
MspR9I CCNGG 6 cut(s) 392, 695, 851, 1391, 2200, 2312
MunI CAATTG 2 cut(s) 1557, 1935
Mva1269I GAATGC 2 cut(s) 1233, 1370
MvaI CCWGG 6 cut(s) 392, 695, 851, 1391, 2200, 2312
MwoI GCNNNNNNNGC 7 cut(s) 401, 404, 893, 1082, 1562, 2122, 2150
NcoI CCATGG 1 cut(s) 1551
NdeI CATATG 2 cut(s) 492, 1998
NlaIV GGNNCC 5 cut(s) 210, 310, 342, 1044, 1549
NmuCI GTSAC 2 cut(s) 466, 782
NspI RCATGY 3 cut(s) 595, 1493, 2120
OliI CACNNNNGTG 1 cut(s) 1066
PagI TCATGA 2 cut(s) 705, 1827
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 2 cut(s) 1233, 1370
PfeI GAWTC 2 cut(s) 1808, 2321
PflFI GACNNNGTC 1 cut(s) 1604
PflMI CCANNNNNTGG 1 cut(s) 856
PfoI TCCNGGA 1 cut(s) 2198
PleI GAGTC 1 cut(s) 1887
PpsI GAGTC 1 cut(s) 1887
Psp124BI GAGCTC 1 cut(s) 705
Psp1406I AACGTT 1 cut(s) 1338
Psp6I CCWGG 6 cut(s) 390, 693, 849, 1389, 2198, 2310
PspGI CCWGG 6 cut(s) 390, 693, 849, 1389, 2198, 2310
PspN4I GGNNCC 5 cut(s) 210, 310, 342, 1044, 1549
PspPI GGNCC 3 cut(s) 280, 1547, 1658
PstI CTGCAG 2 cut(s) 1357, 1363
PstNI CAGNNNCTG 1 cut(s) 2287
PsyI GACNNNGTC 1 cut(s) 1604
PvuII CAGCTG 2 cut(s) 721, 1358
RsaI GTAC 6 cut(s) 777, 1681, 1792, 1822, 2270, 2303
RsaNI GTAC 6 cut(s) 776, 1680, 1791, 1821, 2269, 2302
RseI CAYNNNNRTG 2 cut(s) 1066, 2055
SacI GAGCTC 1 cut(s) 705
SaqAI TTAA 9 cut(s) 89, 321, 414, 474, 656, 921, 1206, 1476, 2067
Sau96I GGNCC 3 cut(s) 280, 1547, 1658
ScaI AGTACT 2 cut(s) 1681, 2303
SchI GAGTC 1 cut(s) 1888
ScrFI CCNGG 6 cut(s) 392, 695, 851, 1391, 2200, 2312
SduI GDGCHC 1 cut(s) 705
SfaNI GCATC 4 cut(s) 883, 916, 1396, 1552
SfcI CTRYAG 4 cut(s) 258, 1353, 1359, 2375
SmiMI CAYNNNNRTG 2 cut(s) 1066, 2055
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
SpeI ACTAGT 3 cut(s) 509, 1133, 2017
SsiI CCGC 4 cut(s) 398, 1057, 2123, 2284
SspI AATATT 1 cut(s) 499
SstI GAGCTC 1 cut(s) 705
StyD4I CCNGG 6 cut(s) 390, 693, 849, 1389, 2198, 2310
StyI CCWWGG 3 cut(s) 800, 1317, 1551
TaaI ACNGT 4 cut(s) 262, 613, 1795, 2026
TaiI ACGT 2 cut(s) 1341, 1826
TaqI TCGA 5 cut(s) 26, 48, 294, 548, 911
TatI WGTACW 2 cut(s) 1679, 2301
TauI GCSGC 2 cut(s) 401, 2287
TfiI GAWTC 2 cut(s) 1808, 2321
Tru1I TTAA 9 cut(s) 89, 321, 414, 474, 656, 921, 1206, 1476, 2067
Tru9I TTAA 9 cut(s) 89, 321, 414, 474, 656, 921, 1206, 1476, 2067
TscAI CASTG 5 cut(s) 1073, 1313, 1443, 1974, 2343
TseFI GTSAC 2 cut(s) 466, 782
Tsp45I GTSAC 2 cut(s) 466, 782
TspGWI ACGGA 3 cut(s) 1129, 1390, 2121
TspRI CASTG 5 cut(s) 1073, 1313, 1443, 1974, 2343
Tth111I GACNNNGTC 1 cut(s) 1604
Van91I CCANNNNNTGG 1 cut(s) 856
XapI RAATTY 3 cut(s) 520, 752, 1532
XbaI TCTAGA 3 cut(s) 623, 889, 2080
XceI RCATGY 3 cut(s) 595, 1493, 2120
XmiI GTMKAC 1 cut(s) 1979
ZrmI AGTACT 2 cut(s) 1681, 2303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.