Rmu_sc0001714.1_g000006

DNA mismatch repair protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001714.1
Physical Location & Seq
Forward (+)
15496 .. 24584
9089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001714.1_g000006.1.cds

Sequence Viewer

Length: 1929 bp
atggaagacgacggaggagagagatcgagcttcgtcatcggtctcatcgagaacagagccaaggaggttggagtggcagcattcgatttaaggtcggcttctctacatctatctcaatatattgagactagtagttcatatcagaatacaaaaactttgctgcaattctacgatcctatggtgattattgtttcccccaacaaactggcacctgatgggatggttggagtttcagaattggcggatagattttatgccacagtcaagaaggttgtaatggctcgtggttgctttgatgacactacgggtgctgtgttgattaaaaatttagcagccaaggaaccttcagcactaggattggatacttattacaagcagtactatctctgcttggccgctgcagcagctacaattaagtgtgttcaaaatttggaaatcattgacccgcttcattctacactgtggggtacaagcaataagaagagaagtttgttgcatatgctgaagacgacaaaaactataggagggtctaggcttcttcgtgccaatctattgcagcctttaaaagatattgagactataaatgctcgtctagattgcctggatgagctaatgagcaacgaacagctattctttggactctctcaggttctgcgcaaattcccaaaagagagtgatagagtactttgtcacttctgcttcaagccaaagaaaattacaaataaagttatgggtgttgataatgctagaaaaagccagctgttggtatcaagcattattctcctcaaaactgctctagacgctttgcctttactctcaagggctctcaaagatgcaaaaagttctcttcttgctaatatttacaagtctgtgtgtgaaaatgagaaatatgctgctattagcaaaaggattggagaggtgattgatgaagatgtgcttcatgcaagggtaccttttgtagcccgcacccagcagtgttttgctgtaaaggccggaattgatggacttttggatattgcacggagatcattttgtgatactagtgaagaaagtaataagcttctcaatgtcaaattgacagctatacataatcttgctaacaagtaccgtgaagatttcaagttccccaatttgaaactcacatttaacaataggcaaggtttttacttcagcattccacataagagcattgaggggaagcttcctagccagttcattcaggtgttgaaacacgggaacaatatacattgctcaactttggagcttgcttctctaaacgttagaaataagtctgcagctgcagaatgcttcctacggactgaagtttgcctggaagaattagtagacgccatacgagaggatgtttcagcactcacattacttgcagaggccttgtgccttctagatatgattgttaactcatttgcacataccatttccaataagcctgctgatcattatactagaccagaatttacagatgatggcccaatggcaattgaagctggaagacaccctatccttgagagcatacacaatgattttgttcccaacaacatctttttatcggaggcatcaaacatggtgctgattgtgggcccaaacatgagtggaaagagcacttatcttcagcaagtatgtcttatagttattcttgctcagatcggttgttatgttcctgctcgcttctcaactttgagggttgttgatcggatatttacaaggatgggtacagtggacaatcttgaatccaactctagtacggaagtgaagaggatggaagtaaactgcctgcgatatcatccaatccagatggcttaccatgttgctcagcgtctcatatgtttgaaatattccagccaggatgaggattcaatcagagaagcaatgcataacctgaaagagagctacattcatggcgggctgtga

Protein Analysis

642

Amino Acids

71.73

Weight (kDa)

8.18

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 656
Acc65I GGTACC 1 cut(s) 949
AccB1I GGYRCC 2 cut(s) 208, 949
AccB7I CCANNNNNTGG 1 cut(s) 763
AccI GTMKAC 1 cut(s) 1344
AciI CCGC 5 cut(s) 242, 396, 446, 964, 1920
AclI AACGTT 1 cut(s) 1278
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 4 cut(s) 325, 427, 659, 1472
AcuI CTGAAG 5 cut(s) 330, 524, 1153, 1341, 1613
AcyI GRCGYC 1 cut(s) 1347
AfaI GTAC 7 cut(s) 380, 469, 684, 951, 1106, 1732, 1762
AfiI CCNNNNNNNGG 2 cut(s) 763, 1867
AgsI TTSAA 9 cut(s) 425, 703, 1120, 1135, 1228, 1502, 1748, 1849, 1875
AhlI ACTAGT 2 cut(s) 128, 1040
AjnI CCWGG 3 cut(s) 600, 1329, 1860
Alw21I GWGCWC 1 cut(s) 1622
Alw26I GTCTC 4 cut(s) 47, 119, 569, 1841
AlwI GGATC 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 652
AoxI GGCC 5 cut(s) 393, 990, 1389, 1486, 1597
ApaI GGGCCC 1 cut(s) 1601
ApoI RAATTY 4 cut(s) 325, 427, 659, 1472
Asp718I GGTACC 1 cut(s) 949
AspLEI GCGC 1 cut(s) 657
AspS9I GGNCC 3 cut(s) 1487, 1597, 1598
AsuHPI GGTGA 2 cut(s) 193, 931
BaeGI GKGCMC 1 cut(s) 1601
BanI GGYRCC 2 cut(s) 208, 949
BanII GRGCYC 2 cut(s) 826, 1601
BauI CACGAG 1 cut(s) 282
BbsI GAAGAC 3 cut(s) 12, 512, 1516
Bbv12I GWGCWC 1 cut(s) 1622
BccI CCATC 7 cut(s) 209, 214, 995, 1478, 1720, 1771, 1807
BciT130I CCWGG 3 cut(s) 602, 1331, 1862
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 1 cut(s) 1453
BcoDI GTCTC 4 cut(s) 47, 119, 569, 1841
BcuI ACTAGT 2 cut(s) 128, 1040
BfmI CTRYAG 4 cut(s) 399, 519, 1293, 1299
BfuI GTATCC 1 cut(s) 355
BlpI GCTNAGC 1 cut(s) 1830
BmcAI AGTACT 2 cut(s) 380, 684
Bme1390I CCNGG 3 cut(s) 602, 1331, 1862
BmgT120I GGNCC 3 cut(s) 1487, 1597, 1598
BmiI GGNNCC 4 cut(s) 210, 342, 951, 1599
BmrFI CCNGG 3 cut(s) 602, 1331, 1862
BmsI GCATC 2 cut(s) 823, 1583
BpiI GAAGAC 3 cut(s) 12, 512, 1516
Bpu1102I GCTNAGC 1 cut(s) 1830
BpuEI CTTGAG 2 cut(s) 802, 1544
BsaHI GRCGYC 1 cut(s) 1347
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 60, 336
Bsc4I CCNNNNNNNGG 2 cut(s) 763, 1867
Bse1I ACTGG 2 cut(s) 210, 1210
Bse3DI GCAATG 2 cut(s) 1246, 1893
BseBI CCWGG 3 cut(s) 602, 1331, 1862
BseDI CCNNGG 2 cut(s) 60, 336
BseGI GGATG 7 cut(s) 225, 610, 1366, 1731, 1782, 1801, 1870
BseLI CCNNNNNNNGG 2 cut(s) 763, 1867
BseMI GCAATG 2 cut(s) 1246, 1893
BseMII CTCAG 3 cut(s) 659, 1673, 1844
BseNI ACTGG 2 cut(s) 210, 1210
BseRI GAGGAG 2 cut(s) 30, 773
BseSI GKGCMC 1 cut(s) 1601
BseYI CCCAGC 1 cut(s) 969
BshFI GGCC 5 cut(s) 395, 992, 1391, 1488, 1599
BshNI GGYRCC 2 cut(s) 208, 949
BsiHKAI GWGCWC 1 cut(s) 1622
BsiSI CCGG 1 cut(s) 993
BslI CCNNNNNNNGG 2 cut(s) 763, 1867
BsmAI GTCTC 4 cut(s) 47, 119, 569, 1841
BsmBI CGTCTC 1 cut(s) 1841
BsmI GAATGC 3 cut(s) 80, 1173, 1310
BsnI GGCC 5 cut(s) 395, 992, 1391, 1488, 1599
Bso31I GGTCTC 1 cut(s) 47
Bsp120I GGGCCC 1 cut(s) 1597
Bsp1286I GDGCHC 3 cut(s) 826, 1601, 1622
Bsp143I GATC 6 cut(s) 23, 172, 1025, 1453, 1662, 1708
Bsp1720I GCTNAGC 1 cut(s) 1830
BspACI CCGC 5 cut(s) 242, 396, 446, 964, 1920
BspANI GGCC 5 cut(s) 395, 992, 1391, 1488, 1599
BspCNI CTCAG 3 cut(s) 658, 1672, 1843
BspLI GGNNCC 4 cut(s) 210, 342, 951, 1599
BspMAI CTGCAG 3 cut(s) 403, 1297, 1303
BspPI GGATC 1 cut(s) 167
BspT107I GGYRCC 2 cut(s) 208, 949
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 1246, 1893
BsrI ACTGG 2 cut(s) 210, 1210
BssECI CCNNGG 2 cut(s) 60, 336
BssMI GATC 6 cut(s) 23, 172, 1025, 1453, 1662, 1708
BssNI GRCGYC 1 cut(s) 1347
BssSI CACGAG 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 60, 336
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 3 cut(s) 602, 1331, 1862
Bst4CI ACNGT 4 cut(s) 262, 462, 1109, 1735
Bst6I CTCTTC 3 cut(s) 476, 852, 1766
BstACI GRCGYC 1 cut(s) 1347
BstC8I GCNNGC 7 cut(s) 758, 964, 1266, 1449, 1684, 1793, 1922
BstDEI CTNAG 3 cut(s) 645, 1659, 1830
BstF5I GGATG 7 cut(s) 225, 610, 1366, 1731, 1782, 1801, 1870
BstHHI GCGC 1 cut(s) 657
BstKTI GATC 6 cut(s) 26, 175, 1028, 1456, 1665, 1711
BstMAI GTCTC 4 cut(s) 47, 119, 569, 1841
BstMBI GATC 6 cut(s) 23, 172, 1025, 1453, 1662, 1708
BstMWI GCNNNNNNNGC 5 cut(s) 401, 404, 800, 989, 1502
BstNI CCWGG 3 cut(s) 602, 1331, 1862
BstSCI CCNGG 3 cut(s) 600, 1329, 1860
BstSFI CTRYAG 4 cut(s) 399, 519, 1293, 1299
BstSLI GKGCMC 1 cut(s) 1601
BstV2I GAAGAC 3 cut(s) 12, 512, 1516
BstXI CCANNNNNNTGG 1 cut(s) 205
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 5 cut(s) 395, 992, 1391, 1488, 1599
BtsCI GGATG 7 cut(s) 225, 610, 1366, 1731, 1782, 1801, 1870
BtsI GCAGTG 1 cut(s) 980
BtsIMutI CAGTG 3 cut(s) 458, 980, 1740
Cac8I GCNNGC 7 cut(s) 758, 964, 1266, 1449, 1684, 1793, 1922
CaiI CAGNNNCTG 1 cut(s) 652
CfoI GCGC 1 cut(s) 657
Cfr13I GGNCC 3 cut(s) 1487, 1597, 1598
CseI GACGC 3 cut(s) 809, 1355, 1823
Csp6I GTAC 7 cut(s) 379, 468, 683, 950, 1105, 1731, 1761
CviAII CATG 5 cut(s) 941, 1582, 1606, 1823, 1916
CviQI GTAC 7 cut(s) 379, 468, 683, 950, 1105, 1731, 1761
DdeI CTNAG 3 cut(s) 645, 1659, 1830
DpnI GATC 6 cut(s) 25, 174, 1027, 1455, 1664, 1710
DpnII GATC 6 cut(s) 23, 172, 1025, 1453, 1662, 1708
DraI TTTAAA 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 3 cut(s) 476, 852, 1766
EarI CTCTTC 3 cut(s) 476, 852, 1766
EciI GGCGGA 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 60, 336
Eco147I AGGCCT 1 cut(s) 1391
Eco24I GRGCYC 2 cut(s) 826, 1601
Eco31I GGTCTC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 1799
Eco57I CTGAAG 5 cut(s) 330, 524, 1153, 1341, 1613
EcoRII CCWGG 3 cut(s) 600, 1329, 1860
EcoRV GATATC 1 cut(s) 1799
EcoT14I CCWWGG 2 cut(s) 60, 336
EcoT22I ATGCAT 1 cut(s) 1893
EcoT38I GRGCYC 2 cut(s) 826, 1601
ErhI CCWWGG 2 cut(s) 60, 336
Esp3I CGTCTC 1 cut(s) 1841
FaeI CATG 5 cut(s) 944, 1585, 1609, 1826, 1919
FalI AAGNNNNNCTT 8 cut(s) 82, 114, 921, 953, 937, 969, 1626, 1658
FatI CATG 5 cut(s) 940, 1581, 1605, 1822, 1915
FauI CCCGC 3 cut(s) 453, 971, 1913
FauNDI CATATG 2 cut(s) 498, 1841
FbaI TGATCA 1 cut(s) 1453
FblI GTMKAC 1 cut(s) 1344
FokI GGATG 7 cut(s) 232, 617, 1373, 1738, 1788, 1789, 1877
FriOI GRGCYC 2 cut(s) 826, 1601
FspI TGCGCA 1 cut(s) 656
GlaI GCGC 1 cut(s) 656
GsaI CCCAGC 1 cut(s) 973
HaeIII GGCC 5 cut(s) 395, 992, 1391, 1488, 1599
HapII CCGG 1 cut(s) 993
HgaI GACGC 3 cut(s) 809, 1355, 1823
HhaI GCGC 1 cut(s) 657
Hin1I GRCGYC 1 cut(s) 1347
Hin1II CATG 5 cut(s) 944, 1585, 1609, 1826, 1919
Hin6I GCGC 1 cut(s) 655
HinP1I GCGC 1 cut(s) 655
HincII GTYRAC 1 cut(s) 1417
HindII GTYRAC 1 cut(s) 1417
HindIII AAGCTT 2 cut(s) 1058, 1199
HinfI GANTC 3 cut(s) 639, 1748, 1871
HpaI GTTAAC 1 cut(s) 1417
HpaII CCGG 1 cut(s) 993
HphI GGTGA 2 cut(s) 193, 931
Hpy166II GTNNAC 4 cut(s) 1345, 1417, 1738, 1786
Hpy188I TCNGA 6 cut(s) 144, 235, 1570, 1662, 1713, 1880
Hpy188III TCNNGA 7 cut(s) 49, 265, 593, 797, 1403, 1745, 1810
Hpy8I GTNNAC 4 cut(s) 1345, 1417, 1738, 1786
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 3 cut(s) 262, 354, 1409
HpyCH4III ACNGT 4 cut(s) 262, 462, 1109, 1735
HpyCH4IV ACGT 1 cut(s) 1278
HpyF10VI GCNNNNNNNGC 5 cut(s) 401, 404, 800, 989, 1502
HpyF3I CTNAG 3 cut(s) 645, 1659, 1830
HpySE526I ACGT 1 cut(s) 1278
Hsp92I GRCGYC 1 cut(s) 1347
Hsp92II CATG 5 cut(s) 944, 1585, 1609, 1826, 1919
HspAI GCGC 1 cut(s) 655
KpnI GGTACC 1 cut(s) 953
Ksp22I TGATCA 1 cut(s) 1453
KspAI GTTAAC 1 cut(s) 1417
Kzo9I GATC 6 cut(s) 23, 172, 1025, 1453, 1662, 1708
LmnI GCTCC 1 cut(s) 1261
LweI GCATC 2 cut(s) 823, 1583
MaeII ACGT 1 cut(s) 1278
MaeIII GTNAC 1 cut(s) 689
MalI GATC 6 cut(s) 25, 174, 1027, 1455, 1664, 1710
MboI GATC 6 cut(s) 23, 172, 1025, 1453, 1662, 1708
MfeI CAATTG 1 cut(s) 1497
MhlI GDGCHC 3 cut(s) 826, 1601, 1622
MlyI GAGTC 1 cut(s) 633
MmeI TCCRAC 3 cut(s) 49, 205, 1776
Mph1103I ATGCAT 1 cut(s) 1893
MseI TTAA 6 cut(s) 89, 321, 414, 563, 1146, 1416
MslI CAYNNNNRTG 1 cut(s) 1220
MspA1I CMGCKG 3 cut(s) 398, 760, 1298
MspI CCGG 1 cut(s) 993
MspR9I CCNGG 3 cut(s) 602, 1331, 1862
MunI CAATTG 1 cut(s) 1497
Mva1269I GAATGC 3 cut(s) 80, 1173, 1310
MvaI CCWGG 3 cut(s) 602, 1331, 1862
MwoI GCNNNNNNNGC 5 cut(s) 401, 404, 800, 989, 1502
NdeI CATATG 2 cut(s) 498, 1841
NdeII GATC 6 cut(s) 23, 172, 1025, 1453, 1662, 1708
NlaIII CATG 5 cut(s) 944, 1585, 1609, 1826, 1919
NlaIV GGNNCC 4 cut(s) 210, 342, 951, 1599
NmuCI GTSAC 1 cut(s) 689
NsbI TGCGCA 1 cut(s) 656
NsiI ATGCAT 1 cut(s) 1893
PceI AGGCCT 1 cut(s) 1391
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 3 cut(s) 80, 1173, 1310
PfeI GAWTC 2 cut(s) 1748, 1871
PflMI CCANNNNNTGG 1 cut(s) 763
PleI GAGTC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 633
Psp1406I AACGTT 1 cut(s) 1278
Psp6I CCWGG 3 cut(s) 600, 1329, 1860
PspFI CCCAGC 1 cut(s) 969
PspGI CCWGG 3 cut(s) 600, 1329, 1860
PspN4I GGNNCC 4 cut(s) 210, 342, 951, 1599
PspOMI GGGCCC 1 cut(s) 1597
PspPI GGNCC 3 cut(s) 1487, 1597, 1598
PstI CTGCAG 3 cut(s) 403, 1297, 1303
PstNI CAGNNNCTG 1 cut(s) 652
PvuII CAGCTG 2 cut(s) 760, 1298
RsaI GTAC 7 cut(s) 380, 469, 684, 951, 1106, 1732, 1762
RsaNI GTAC 7 cut(s) 379, 468, 683, 950, 1105, 1731, 1761
RseI CAYNNNNRTG 1 cut(s) 1220
SaqAI TTAA 6 cut(s) 89, 321, 414, 563, 1146, 1416
Sau3AI GATC 6 cut(s) 23, 172, 1025, 1453, 1662, 1708
Sau96I GGNCC 3 cut(s) 1487, 1597, 1598
ScaI AGTACT 2 cut(s) 380, 684
SchI GAGTC 1 cut(s) 633
ScrFI CCNGG 3 cut(s) 602, 1331, 1862
SduI GDGCHC 3 cut(s) 826, 1601, 1622
SfaNI GCATC 2 cut(s) 823, 1583
SfcI CTRYAG 4 cut(s) 399, 519, 1293, 1299
SmiMI CAYNNNNRTG 1 cut(s) 1220
SmlI CTYRAG 2 cut(s) 817, 1523
SmoI CTYRAG 2 cut(s) 817, 1523
SpeI ACTAGT 2 cut(s) 128, 1040
SseBI AGGCCT 1 cut(s) 1391
SsiI CCGC 5 cut(s) 242, 396, 446, 964, 1920
SspI AATATT 2 cut(s) 859, 1853
StuI AGGCCT 1 cut(s) 1391
StyD4I CCNGG 3 cut(s) 600, 1329, 1860
StyI CCWWGG 2 cut(s) 60, 336
TaaI ACNGT 4 cut(s) 262, 462, 1109, 1735
TaiI ACGT 1 cut(s) 1281
TaqI TCGA 3 cut(s) 26, 48, 84
TaqII GACCGA 1 cut(s) 29
TatI WGTACW 2 cut(s) 378, 682
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 2 cut(s) 1748, 1871
Tru1I TTAA 6 cut(s) 89, 321, 414, 563, 1146, 1416
Tru9I TTAA 6 cut(s) 89, 321, 414, 563, 1146, 1416
TscAI CASTG 3 cut(s) 465, 980, 1740
TseFI GTSAC 1 cut(s) 689
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 6 cut(s) 126, 440, 929, 942, 1204, 1904
TspGWI ACGGA 4 cut(s) 27, 1036, 1330, 1778
TspRI CASTG 3 cut(s) 465, 980, 1740
Van91I CCANNNNNTGG 1 cut(s) 763
XapI RAATTY 4 cut(s) 325, 427, 659, 1472
XbaI TCTAGA 3 cut(s) 592, 796, 1402
XmiI GTMKAC 1 cut(s) 1344
ZrmI AGTACT 2 cut(s) 380, 684
Zsp2I ATGCAT 1 cut(s) 1893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.