Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010414

Physical Location & Seq

Genomic Coordinates Reverse (-)

47666442 .. 47676022

Gene Structure 9581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2364 bp

ATGGAAGACGACGGAGGAGAGAGATCGAGCTTCGTCATCGGCCTCATCGAGAACAGAGCCAAGGAGGTTGGAGTGGCAGCATTTGATTTAAGGTCGGCTTCTCTACATCTATCTCAATATATTGAGACTAGTAGTTCATATCAGAATACAAAAACTTTGCTGCAATTCTACGATCCTATGGTGATTATTGTTTCCCCCAACAAACTGGCACCTGATGGGATGGTTGGAGTTTCAGAATTGGCAGATAGATTTTATGCTACAGTCAAGAAGGTTGTAATGGCTCGTGGTTGCTTTGATGACACTACGGGTGCTGTGTTGATTAAAAATCTAGCAGCCAAGGAACCTTCAGCACTAGGATTGGATACTTATTACAAGCAGTACTATCTCTGCTTGGCCGCTGCAGCAGCTACAATTAAGTGGTCTATCGAGATAGAAGCAGAGAAAGGGGTCATCGTTACAAACCACTCATTGTCGGTCACTTTTAATGGATCATTTGCCCATTTGAATATTGATGCTACTAGTGTTCAAAATTTGGAAATCATTGACCCGCTTCATTCTACACTGTGGGGTACAAGCAATAAGAAGAGAAGTTTGTTGCATATGCTGAAGACGACAAAAACTGTAGGAGGGTCTAGGCTTCTTCGTGCCAATCTATTGCAGCCTTTAAAAGATATTGAGACTATAAATGCTCGTCTAGATTGCCTGGATGAGCTAATGAGCAACGAACAGCTATTCTTTGGACTCTCTCAGGTTCTGCGCAAATTCCCGAAAGAGAGTGATAGAGTACTTTGCCACTTCTGCTTCAAGCCAAAGAAAATTACAAATAAAGTTATGGGTGTTGATAATGCTAGAAAAAGCCAGCTGTTGGTATCAAGCATTATTCTCCTCAAAACTGCTCTAGACGCTTTGCCTTTACTCTCAAGGGCTCTCAAAGATGCAAAAAGTTCTCTGCTTGCTAATGTTTACAAGTCCGTGTGTGAAAATGAGAAATATGCTGCTATTAGGAAAAGATGTGCTTCATGCAAGGGTACCTTTGTAGCCCGCACCCAGCAGTGTTTTGCTGTAAAGGCCGGAATTGATGGACTTTTGGATATTGCACGGAGATCATTTTGTGATACTAGTGAAGCTATACATAATCTTGCTAACAAGTACCGGGAAGATTTCAAGTTCCCCAATTTGAAACTCACATTTAACAATAGGCAAGGTTTTTACTTCAGCATTCCACATAAGAGCATTCAGGGGAAGCTTCCTAGCCAGTTCATTCAGGTGTTGAAACACGGGAACAATATACATTGCTCAACTTTGGAGCTTGCTTCTCTAAACGTTCGAAATAAGTCTGCAGCTGCAGAATGCTACATACGGACTGAAGTTTGCCTGGAAGAATTAGTAGACGCCATACGAGAGGATGTTTCTGCACTCACACTACTTGCAGAGGCCTTGTGCCTTCTAGATATGATTGTCAACTCATTTGCACATACCATTTCCAGTAAGCCTGCTGATCATTATACTAGACCAGAATTTACAGATGATGGCCCAATGGCAATTGAAGCTGGAAGACACCCTATCCTTGAGAGCATACACAATGATTTTGTTCCCAACAACATCTTTTTATCGGAGGCATCAAACATGGTGCTGATTGTGGGCCCAAACATGAGTGGAAAGAGCACTTATCTTCAGCAAGTATGTCTTATAGTTATTCTTGCGCAGATCGGTTGTTATGTTCCTGCTCGCTTCTCAACTTTGAGGGTTGTTGATCGGATATTTACAAGGATGGGTACGGTGGACAATCTTGAATCCAACTCTAGTACGTTCATGACAGAAATGAAAGAAACAGCTTTCATCATGCAAAATGTTTCCCAAAGGAGTCTGGTTGTCATGGATGAACTTGGGAGGGCTACTTCTTCCTCTGATGGATTTGCAATTGCATGGAGCTGCTGCGAACATTTGTTATCACTGAAAGCGTATACTATATTTGCTACTCATATGGAGAACCTCTCCGAATTAGTAACTGTCTATCCAAATGTGAAAATACTTCACTTCGATGTTGACATTAAAAATAATCGTCTAGATTTCAAGTTTCAACTCAAGGAAGGACCAAGACATGTTCCACATTATGGGCTTCTATTAGCAGAAGTGGCAGGATTACCAAGCTCGGTGACTGATACAGCCAGAAACATCACAGCCAGGATCACAGAAAAGGAAGTGAAGAGGATGGAAGTAAACTGCCTGCGATATCATCCGATCCAGATGGCTTACCATGTTGCTCAGCGTCTCATATGTTTGAAATATTCCAGCCAGGATGAGGATTCAATCAGAGAAGCACTGCATAACCTGAAAGAGAGCTACATTCATGGCAGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_III MutS_IV MutS_V

Protein Analysis

787

Amino Acids

87.92

Weight (kDa)

8.24

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_III	PF05192	174 - 487	1.3e-24	MutS domain III
MutS_IV	PF05190	358 - 447	1.2e-11	MutS family domain IV
MutS_V	PF00488	545 - 730	1.3e-67	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17380 AT4G17380
fragaria_vesca	FvH4_5g19230 FvH4_5g19230
malus_domestica	MD04G1062200.v1.1
prunus_persica	Prupe.5G066100_v2.0.a1 Prupe.5G066100_v2.0.a1
pyrus_communis	pycom04g05580
rosa_chinensis	RchiOBHm_Chr7g0203731
rosa_laevigata	RLG00000003509
rosa_multiflora	Rmu_sc0001714.1_g000006 Rmu_sc0005354.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253590
rosa_rugosa	Rorug07G0078500 Rorug07G0078600 Rorug07G0078700
rosa_samantha	Rh7AG208200 Rh7BG207200 Rh7CG220400 Rh7DG215100
rosa_wichuraiana	Rw7G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	758, 1704
Acc65I	GGTACC	1 cut(s)	1028
AccB1I	GGYRCC	2 cut(s)	208, 1028
AccB7I	CCANNNNNTGG	2 cut(s)	865, 2114
AccI	GTMKAC	2 cut(s)	1389, 1964
AciI	CCGC	3 cut(s)	396, 548, 1042
AclI	AACGTT	1 cut(s)	1323
AclWI	GGATC	4 cut(s)	167, 496, 2195, 2236
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	3 cut(s)	529, 761, 1517
AcuI	CTGAAG	5 cut(s)	330, 626, 1198, 1386, 1658
AcyI	GRCGYC	1 cut(s)	1392
AfaI	GTAC	7 cut(s)	380, 571, 786, 1030, 1151, 1777, 1807
AfiI	CCNNNNNNNGG	3 cut(s)	865, 2114, 2302
AflIII	ACRYGT	1 cut(s)	2101
AhlI	ACTAGT	3 cut(s)	128, 518, 1118
AjnI	CCWGG	4 cut(s)	702, 1374, 2183, 2295
Alw21I	GWGCWC	1 cut(s)	1667
Alw26I	GTCTC	3 cut(s)	119, 671, 2276
AlwI	GGATC	4 cut(s)	167, 496, 2195, 2236
AlwNI	CAGNNNCTG	1 cut(s)	754
AoxI	GGCC	6 cut(s)	40, 393, 1068, 1434, 1531, 1642
ApaI	GGGCCC	1 cut(s)	1646
ApoI	RAATTY	3 cut(s)	529, 761, 1517
Asp718I	GGTACC	1 cut(s)	1028
AspLEI	GCGC	2 cut(s)	759, 1705
AspS9I	GGNCC	4 cut(s)	1532, 1642, 1643, 2093
AsuC2I	CCSGG	1 cut(s)	1154
AsuHPI	GGTGA	2 cut(s)	193, 2167
AsuII	TTCGAA	1 cut(s)	1327
AvaII	GGWCC	1 cut(s)	2093
BaeGI	GKGCMC	1 cut(s)	1646
BaeI	ACNNNNGTAYC	2 cut(s)	1020, 1053
BanI	GGYRCC	2 cut(s)	208, 1028
BanII	GRGCYC	2 cut(s)	928, 1646
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	3 cut(s)	12, 614, 1561
Bbv12I	GWGCWC	1 cut(s)	1667
BccI	CCATC	8 cut(s)	209, 214, 1073, 1523, 1765, 1904, 2206, 2242
BciT130I	CCWGG	4 cut(s)	704, 1376, 2185, 2297
BciVI	GTATCC	1 cut(s)	355
BclI	TGATCA	1 cut(s)	1498
BcnI	CCSGG	1 cut(s)	1154
BcoDI	GTCTC	3 cut(s)	119, 671, 2276
BcuI	ACTAGT	3 cut(s)	128, 518, 1118
BfmI	CTRYAG	5 cut(s)	258, 399, 621, 1338, 1344
BfuI	GTATCC	1 cut(s)	355
BlpI	GCTNAGC	1 cut(s)	2265
BmcAI	AGTACT	2 cut(s)	380, 786
Bme1390I	CCNGG	5 cut(s)	704, 1154, 1376, 2185, 2297
Bme18I	GGWCC	1 cut(s)	2093
BmgT120I	GGNCC	4 cut(s)	1532, 1642, 1643, 2093
BmiI	GGNNCC	4 cut(s)	210, 342, 1030, 1644
BmrFI	CCNGG	5 cut(s)	704, 1154, 1376, 2185, 2297
BmsI	GCATC	3 cut(s)	502, 925, 1628
BpiI	GAAGAC	3 cut(s)	12, 614, 1561
BplI	GAGNNNNNCTC	2 cut(s)	1979, 2011
Bpu1102I	GCTNAGC	1 cut(s)	2265
Bpu14I	TTCGAA	1 cut(s)	1327
BpuEI	CTTGAG	3 cut(s)	904, 1589, 2069
BpuMI	CCSGG	1 cut(s)	1154
BsaHI	GRCGYC	1 cut(s)	1392
BsaJI	CCNNGG	2 cut(s)	60, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	865, 2114, 2302
Bse1I	ACTGG	3 cut(s)	210, 1255, 1485
Bse3DI	GCAATG	1 cut(s)	1291
BseBI	CCWGG	4 cut(s)	704, 1376, 2185, 2297
BseDI	CCNNGG	2 cut(s)	60, 336
BseGI	GGATG	8 cut(s)	225, 712, 1411, 1776, 1885, 2217, 2236, 2305
BseLI	CCNNNNNNNGG	3 cut(s)	865, 2114, 2302
BseMI	GCAATG	1 cut(s)	1291
BseMII	CTCAG	2 cut(s)	761, 2279
BseNI	ACTGG	3 cut(s)	210, 1255, 1485
BseRI	GAGGAG	2 cut(s)	30, 875
BseSI	GKGCMC	1 cut(s)	1646
BseYI	CCCAGC	1 cut(s)	1047
BsgI	GTGCAG	1 cut(s)	1398
BshFI	GGCC	6 cut(s)	42, 395, 1070, 1436, 1533, 1644
BshNI	GGYRCC	2 cut(s)	208, 1028
BsiHKAI	GWGCWC	1 cut(s)	1667
BsiSI	CCGG	2 cut(s)	1071, 1153
BslI	CCNNNNNNNGG	3 cut(s)	865, 2114, 2302
BsmAI	GTCTC	3 cut(s)	119, 671, 2276
BsmBI	CGTCTC	1 cut(s)	2276
BsmI	GAATGC	3 cut(s)	1218, 1233, 1355
BsnI	GGCC	6 cut(s)	42, 395, 1070, 1436, 1533, 1644
Bsp119I	TTCGAA	1 cut(s)	1327
Bsp120I	GGGCCC	1 cut(s)	1642
Bsp1286I	GDGCHC	3 cut(s)	928, 1646, 1667
Bsp143I	GATC	9 cut(s)	23, 172, 488, 1103, 1498, 1707, 1753, 2187, 2241
Bsp1720I	GCTNAGC	1 cut(s)	2265
BspACI	CCGC	3 cut(s)	396, 548, 1042
BspANI	GGCC	6 cut(s)	42, 395, 1070, 1436, 1533, 1644
BspCNI	CTCAG	2 cut(s)	760, 2278
BspHI	TCATGA	1 cut(s)	1812
BspLI	GGNNCC	4 cut(s)	210, 342, 1030, 1644
BspMAI	CTGCAG	3 cut(s)	403, 1342, 1348
BspPI	GGATC	4 cut(s)	167, 496, 2195, 2236
BspT104I	TTCGAA	1 cut(s)	1327
BspT107I	GGYRCC	2 cut(s)	208, 1028
BsrDI	GCAATG	1 cut(s)	1291
BsrI	ACTGG	3 cut(s)	210, 1255, 1485
BssECI	CCNNGG	2 cut(s)	60, 336
BssMI	GATC	9 cut(s)	23, 172, 488, 1103, 1498, 1707, 1753, 2187, 2241
BssNAI	GTATAC	1 cut(s)	1965
BssNI	GRCGYC	1 cut(s)	1392
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	2 cut(s)	60, 336
Bst1107I	GTATAC	1 cut(s)	1965
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	4 cut(s)	704, 1376, 2185, 2297
Bst4CI	ACNGT	5 cut(s)	262, 564, 622, 1780, 2011
Bst6I	CTCTTC	2 cut(s)	578, 2201
BstACI	GRCGYC	1 cut(s)	1392
BstBI	TTCGAA	1 cut(s)	1327
BstC8I	GCNNGC	8 cut(s)	860, 954, 1042, 1311, 1494, 1729, 2228, 2357
BstDEI	CTNAG	2 cut(s)	747, 2265
BstF5I	GGATG	8 cut(s)	225, 712, 1411, 1776, 1885, 2217, 2236, 2305
BstHHI	GCGC	2 cut(s)	759, 1705
BstKTI	GATC	9 cut(s)	26, 175, 491, 1106, 1501, 1710, 1756, 2190, 2244
BstMAI	GTCTC	3 cut(s)	119, 671, 2276
BstMBI	GATC	9 cut(s)	23, 172, 488, 1103, 1498, 1707, 1753, 2187, 2241
BstMWI	GCNNNNNNNGC	7 cut(s)	401, 404, 798, 902, 1067, 1547, 2135
BstNI	CCWGG	4 cut(s)	704, 1376, 2185, 2297
BstNSI	RCATGY	1 cut(s)	2105
BstSCI	CCNGG	5 cut(s)	702, 1152, 1374, 2183, 2295
BstSFI	CTRYAG	5 cut(s)	258, 399, 621, 1338, 1344
BstSLI	GKGCMC	1 cut(s)	1646
BstV2I	GAAGAC	3 cut(s)	12, 614, 1561
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstZ17I	GTATAC	1 cut(s)	1965
BsuI	GTATCC	1 cut(s)	355
BsuRI	GGCC	6 cut(s)	42, 395, 1070, 1436, 1533, 1644
BtsCI	GGATG	8 cut(s)	225, 712, 1411, 1776, 1885, 2217, 2236, 2305
BtsI	GCAGTG	2 cut(s)	1058, 2321
BtsIMutI	CAGTG	4 cut(s)	560, 1058, 1952, 2321
Cac8I	GCNNGC	8 cut(s)	860, 954, 1042, 1311, 1494, 1729, 2228, 2357
CaiI	CAGNNNCTG	1 cut(s)	754
CciI	TCATGA	1 cut(s)	1812
CfoI	GCGC	2 cut(s)	759, 1705
Cfr13I	GGNCC	4 cut(s)	1532, 1642, 1643, 2093
CseI	GACGC	3 cut(s)	911, 1400, 2258
Csp6I	GTAC	7 cut(s)	379, 570, 785, 1029, 1150, 1776, 1806
CviQI	GTAC	7 cut(s)	379, 570, 785, 1029, 1150, 1776, 1806
DdeI	CTNAG	2 cut(s)	747, 2265
DpnI	GATC	9 cut(s)	25, 174, 490, 1105, 1500, 1709, 1755, 2189, 2243
DpnII	GATC	9 cut(s)	23, 172, 488, 1103, 1498, 1707, 1753, 2187, 2241
DraI	TTTAAA	1 cut(s)	666
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	2 cut(s)	578, 2201
EarI	CTCTTC	2 cut(s)	578, 2201
Eco130I	CCWWGG	2 cut(s)	60, 336
Eco147I	AGGCCT	1 cut(s)	1436
Eco24I	GRGCYC	2 cut(s)	928, 1646
Eco32I	GATATC	1 cut(s)	2234
Eco47I	GGWCC	1 cut(s)	2093
Eco57I	CTGAAG	5 cut(s)	330, 626, 1198, 1386, 1658
EcoRII	CCWGG	4 cut(s)	702, 1374, 2183, 2295
EcoRV	GATATC	1 cut(s)	2234
EcoT14I	CCWWGG	2 cut(s)	60, 336
EcoT38I	GRGCYC	2 cut(s)	928, 1646
ErhI	CCWWGG	2 cut(s)	60, 336
Esp3I	CGTCTC	1 cut(s)	2276
FalI	AAGNNNNNCTT	8 cut(s)	82, 114, 1000, 1032, 1016, 1048, 1671, 1703
FauI	CCCGC	2 cut(s)	555, 1049
FauNDI	CATATG	3 cut(s)	600, 1983, 2276
FbaI	TGATCA	1 cut(s)	1498
FblI	GTMKAC	2 cut(s)	1389, 1964
FokI	GGATG	8 cut(s)	232, 719, 1418, 1783, 1892, 2223, 2224, 2312
FriOI	GRGCYC	2 cut(s)	928, 1646
FspI	TGCGCA	2 cut(s)	758, 1704
GlaI	GCGC	2 cut(s)	758, 1704
GsaI	CCCAGC	1 cut(s)	1051
HaeIII	GGCC	6 cut(s)	42, 395, 1070, 1436, 1533, 1644
HapII	CCGG	2 cut(s)	1071, 1153
HgaI	GACGC	3 cut(s)	911, 1400, 2258
HhaI	GCGC	2 cut(s)	759, 1705
Hin1I	GRCGYC	1 cut(s)	1392
Hin6I	GCGC	2 cut(s)	757, 1703
HinP1I	GCGC	2 cut(s)	757, 1703
HincII	GTYRAC	2 cut(s)	1462, 2047
HindII	GTYRAC	2 cut(s)	1462, 2047
HindIII	AAGCTT	1 cut(s)	1244
HinfI	GANTC	4 cut(s)	741, 1793, 1864, 2306
HpaII	CCGG	2 cut(s)	1071, 1153
HphI	GGTGA	2 cut(s)	193, 2167
Hpy166II	GTNNAC	7 cut(s)	964, 1390, 1462, 1783, 1965, 2047, 2221
Hpy188I	TCNGA	8 cut(s)	144, 235, 1615, 1758, 1909, 1999, 2241, 2315
Hpy8I	GTNNAC	7 cut(s)	964, 1390, 1462, 1783, 1965, 2047, 2221
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	262, 354, 1454, 2084
HpyCH4III	ACNGT	5 cut(s)	262, 564, 622, 1780, 2011
HpyCH4IV	ACGT	2 cut(s)	1323, 1808
HpyF10VI	GCNNNNNNNGC	7 cut(s)	401, 404, 798, 902, 1067, 1547, 2135
HpyF3I	CTNAG	2 cut(s)	747, 2265
HpySE526I	ACGT	2 cut(s)	1323, 1808
Hsp92I	GRCGYC	1 cut(s)	1392
HspAI	GCGC	2 cut(s)	757, 1703
KpnI	GGTACC	1 cut(s)	1032
Ksp22I	TGATCA	1 cut(s)	1498
Kzo9I	GATC	9 cut(s)	23, 172, 488, 1103, 1498, 1707, 1753, 2187, 2241
LmnI	GCTCC	2 cut(s)	1306, 1929
LweI	GCATC	3 cut(s)	502, 925, 1628
MaeII	ACGT	2 cut(s)	1323, 1808
MaeIII	GTNAC	4 cut(s)	454, 475, 2005, 2155
MalI	GATC	9 cut(s)	25, 174, 490, 1105, 1500, 1709, 1755, 2189, 2243
MboI	GATC	9 cut(s)	23, 172, 488, 1103, 1498, 1707, 1753, 2187, 2241
MfeI	CAATTG	2 cut(s)	1542, 1920
MhlI	GDGCHC	3 cut(s)	928, 1646, 1667
MlyI	GAGTC	2 cut(s)	735, 1873
MmeI	TCCRAC	3 cut(s)	49, 205, 1821
MseI	TTAA	7 cut(s)	89, 321, 414, 483, 665, 1191, 2052
MslI	CAYNNNNRTG	2 cut(s)	1265, 2040
MspA1I	CMGCKG	3 cut(s)	398, 862, 1343
MspI	CCGG	2 cut(s)	1071, 1153
MspR9I	CCNGG	5 cut(s)	704, 1154, 1376, 2185, 2297
MunI	CAATTG	2 cut(s)	1542, 1920
Mva1269I	GAATGC	3 cut(s)	1218, 1233, 1355
MvaI	CCWGG	4 cut(s)	704, 1376, 2185, 2297
MwoI	GCNNNNNNNGC	7 cut(s)	401, 404, 798, 902, 1067, 1547, 2135
NciI	CCSGG	1 cut(s)	1154
NdeI	CATATG	3 cut(s)	600, 1983, 2276
NdeII	GATC	9 cut(s)	23, 172, 488, 1103, 1498, 1707, 1753, 2187, 2241
NlaIV	GGNNCC	4 cut(s)	210, 342, 1030, 1644
NmuCI	GTSAC	2 cut(s)	475, 2155
NsbI	TGCGCA	2 cut(s)	758, 1704
NspI	RCATGY	1 cut(s)	2105
NspV	TTCGAA	1 cut(s)	1327
PagI	TCATGA	1 cut(s)	1812
PceI	AGGCCT	1 cut(s)	1436
PciI	ACATGT	1 cut(s)	2101
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	3 cut(s)	1218, 1233, 1355
PfeI	GAWTC	2 cut(s)	1793, 2306
PflMI	CCANNNNNTGG	2 cut(s)	865, 2114
PleI	GAGTC	2 cut(s)	735, 1872
PpsI	GAGTC	2 cut(s)	735, 1872
PscI	ACATGT	1 cut(s)	2101
Psp1406I	AACGTT	1 cut(s)	1323
Psp6I	CCWGG	4 cut(s)	702, 1374, 2183, 2295
PspFI	CCCAGC	1 cut(s)	1047
PspGI	CCWGG	4 cut(s)	702, 1374, 2183, 2295
PspN4I	GGNNCC	4 cut(s)	210, 342, 1030, 1644
PspOMI	GGGCCC	1 cut(s)	1642
PspPI	GGNCC	4 cut(s)	1532, 1642, 1643, 2093
PstI	CTGCAG	3 cut(s)	403, 1342, 1348
PstNI	CAGNNNCTG	1 cut(s)	754
PvuII	CAGCTG	2 cut(s)	862, 1343
RsaI	GTAC	7 cut(s)	380, 571, 786, 1030, 1151, 1777, 1807
RsaNI	GTAC	7 cut(s)	379, 570, 785, 1029, 1150, 1776, 1806
RseI	CAYNNNNRTG	2 cut(s)	1265, 2040
SaqAI	TTAA	7 cut(s)	89, 321, 414, 483, 665, 1191, 2052
Sau3AI	GATC	9 cut(s)	23, 172, 488, 1103, 1498, 1707, 1753, 2187, 2241
Sau96I	GGNCC	4 cut(s)	1532, 1642, 1643, 2093
ScaI	AGTACT	2 cut(s)	380, 786
SchI	GAGTC	2 cut(s)	735, 1873
ScrFI	CCNGG	5 cut(s)	704, 1154, 1376, 2185, 2297
SduI	GDGCHC	3 cut(s)	928, 1646, 1667
SfaNI	GCATC	3 cut(s)	502, 925, 1628
SfcI	CTRYAG	5 cut(s)	258, 399, 621, 1338, 1344
SfuI	TTCGAA	1 cut(s)	1327
SinI	GGWCC	1 cut(s)	2093
SmiMI	CAYNNNNRTG	2 cut(s)	1265, 2040
SmlI	CTYRAG	3 cut(s)	919, 1568, 2084
SmoI	CTYRAG	3 cut(s)	919, 1568, 2084
SpeI	ACTAGT	3 cut(s)	128, 518, 1118
SseBI	AGGCCT	1 cut(s)	1436
SsiI	CCGC	3 cut(s)	396, 548, 1042
SspI	AATATT	2 cut(s)	508, 2288
StuI	AGGCCT	1 cut(s)	1436
StyD4I	CCNGG	5 cut(s)	702, 1152, 1374, 2183, 2295
StyI	CCWWGG	2 cut(s)	60, 336
TaaI	ACNGT	5 cut(s)	262, 564, 622, 1780, 2011
TaiI	ACGT	2 cut(s)	1326, 1811
TaqI	TCGA	5 cut(s)	26, 48, 426, 1327, 2040
TaqII	GACCGA	1 cut(s)	463
TatI	WGTACW	2 cut(s)	378, 784
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	1793, 2306
Tru1I	TTAA	7 cut(s)	89, 321, 414, 483, 665, 1191, 2052
Tru9I	TTAA	7 cut(s)	89, 321, 414, 483, 665, 1191, 2052
TscAI	CASTG	4 cut(s)	567, 1058, 1959, 2328
TseFI	GTSAC	2 cut(s)	475, 2155
Tsp45I	GTSAC	2 cut(s)	475, 2155
TspDTI	ATGAA	9 cut(s)	126, 542, 1008, 1249, 1801, 1828, 1838, 1896, 2339
TspGWI	ACGGA	4 cut(s)	27, 961, 1114, 1375
TspRI	CASTG	4 cut(s)	567, 1058, 1959, 2328
Van91I	CCANNNNNTGG	2 cut(s)	865, 2114
VpaK11BI	GGWCC	1 cut(s)	2093
XapI	RAATTY	3 cut(s)	529, 761, 1517
XbaI	TCTAGA	4 cut(s)	694, 898, 1447, 2065
XceI	RCATGY	1 cut(s)	2105
XmiI	GTMKAC	2 cut(s)	1389, 1964
ZrmI	AGTACT	2 cut(s)	380, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.