Rorug07G0078700

DNA mismatch repair protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
6115082 .. 6115345
264 bp
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UTR
Exon/CDS
Intron
Rorug07G0078700.1

Sequence Viewer

Length: 264 bp
ATGGTGCTGCAAGACTCTCGGGTGCAGCCTTTACTTGGGACTAAAAGGAAGGCGGTGGATATTTTGGGTAGAGTTGGCAATCGATTTGTCAACACCTCTACTCCCCTGCTCAAGGTCGATGATGAACTACAGTTGGTGCTCCAACATAAAAATGGTAAGCTCGTGGTTTCTCCACGGAGGAAGAAAGTGGGGCTCCCTAAGGGGAGCAAGAATAAGCCCAAGTGTGCGAGAATTTTTGATAAGGAGATGCAAGGCAAGAAATAG

Protein Analysis

87

Amino Acids

9.77

Weight (kDa)

10.7

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 35, 112
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 7, 25
ApoI RAATTY 1 cut(s) 231
AvaI CYCGRG 1 cut(s) 18
AxyI CCTNAGG 1 cut(s) 198
BanII GRGCYC 1 cut(s) 195
BauI CACGAG 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 37
BcgI CGANNNNNNTGC 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 128
BisI GCNGC 2 cut(s) 8, 26
BlsI GCNGC 2 cut(s) 9, 27
BmeT110I CYCGRG 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 194
BmsI GCATC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 95
Bsa29I ATCGAT 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 112
Bse21I CCTNAGG 1 cut(s) 198
BseCI ATCGAT 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 173
BseLI CCNNNNNNNGG 2 cut(s) 35, 112
BseXI GCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 2 cut(s) 35, 112
BsmFI GGGAC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 18
Bsp1286I GDGCHC 2 cut(s) 141, 195
BspACI CCGC 1 cut(s) 53
BspDI ATCGAT 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 173
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 173
BstENI CCTNNNNNAGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 37
Bsu15I ATCGAT 1 cut(s) 82
Bsu36I CCTNAGG 1 cut(s) 198
BsuTUI ATCGAT 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 173
ClaI ATCGAT 1 cut(s) 82
CviJI RGCY 4 cut(s) 28, 160, 193, 217
CviKI_1 RGCY 4 cut(s) 28, 160, 193, 217
DdeI CTNAG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 195
Eco81I CCTNAGG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 195
FaiI YATR 1 cut(s) 147
FaqI GGGAC 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 8, 26
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 2 cut(s) 8, 26
GluI GCNGC 2 cut(s) 8, 26
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 10, 25, 250
HpyF3I CTNAG 1 cut(s) 198
LmnI GCTCC 3 cut(s) 144, 198, 204
LpnPI CCDG 1 cut(s) 119
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 237
MboII GAAGA 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 141, 195
MluCI AATT 1 cut(s) 231
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 2 cut(s) 106, 171
MslI CAYNNNNRTG 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 194
PkrI GCNGC 2 cut(s) 9, 27
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 150
SatI GCNGC 2 cut(s) 8, 26
SchI GAGTC 1 cut(s) 8
SduI GDGCHC 2 cut(s) 141, 195
SetI ASST 3 cut(s) 98, 117, 162
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 231
SsiI CCGC 1 cut(s) 53
TaaI ACNGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 82, 117
TasI AATT 1 cut(s) 231
TseI GCWGC 2 cut(s) 7, 25
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 190
XagI CCTNNNNNAGG 1 cut(s) 110
XapI RAATTY 1 cut(s) 231
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.