Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010414

Physical Location & Seq

Genomic Coordinates Forward (+)

6062885 .. 6064458

Gene Structure 1574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0078500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGGATGGAAGCATCAAAAGGATCTCTTGCCGCTGCATCTCACCGGGAACATGCAAGTATATCAATAGGCAATGGTTTTGATCTCAGCGTTACCATCTACACTCATATAACAAATTCAAAATATGGTGGAAAGCTCTACACTGATATCACCGAGACTGGTGGCCTATATTATCCGGTCTTGACAGGTAGAAGAGATAGTACCCAGTCCTACTTTGATGTGGCATTGGCGGAGATTCCAAAACCTGGTGACAGTATCACTCAGATATTGCATCTGTTCTCAAATGGAGGTTTTAGTGAGAGAGAAACAGTTGCTCTTCTAGGAGTGCACAACATTGTAAAGATAGGATCTGCTGAACTATGGTTTGGATTTGGGTTGGTTTCAACTCTGAGTGGTAGACCAAAAAGCTCTAAGAGGACTGGATCTGCAGACTGGCTTTTTTCACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_III MutS_IV MutS_V

Protein Analysis

149

Amino Acids

16.05

Weight (kDa)

8.02

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	50 - 112	4.3e-13	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17380 AT4G17380
fragaria_vesca	FvH4_5g19230 FvH4_5g19230
malus_domestica	MD04G1062200.v1.1
prunus_persica	Prupe.5G066100_v2.0.a1 Prupe.5G066100_v2.0.a1
pyrus_communis	pycom04g05580
rosa_chinensis	RchiOBHm_Chr7g0203731
rosa_laevigata	RLG00000003509
rosa_multiflora	Rmu_sc0001714.1_g000006 Rmu_sc0005354.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253590
rosa_rugosa	Rorug07G0078500 Rorug07G0078600 Rorug07G0078700
rosa_samantha	Rh7AG208200 Rh7BG207200 Rh7CG220400 Rh7DG215100
rosa_wichuraiana	Rw7G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	397
AciI	CCGC	2 cut(s)	33, 230
AclWI	GGATC	3 cut(s)	31, 355, 430
AcsI	RAATTY	1 cut(s)	115
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	120, 384
AjnI	CCWGG	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	348, 380
AluBI	AGCT	2 cut(s)	136, 408
AluI	AGCT	2 cut(s)	136, 408
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	149
Alw44I	GTGCAC	1 cut(s)	326
AlwI	GGATC	3 cut(s)	31, 355, 430
AoxI	GGCC	1 cut(s)	163
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	3 cut(s)	35, 142, 260
BaeGI	GKGCMC	1 cut(s)	330
BarI	GAAGNNNNNNTAC	2 cut(s)	184, 216
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	426
BisI	GCNGC	2 cut(s)	33, 36
BlsI	GCNGC	2 cut(s)	34, 37
Bme1390I	CCNGG	2 cut(s)	47, 246
BmrFI	CCNGG	2 cut(s)	47, 246
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	3 cut(s)	23, 47, 280
BmuI	ACTGGG	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse1I	ACTGG	4 cut(s)	163, 205, 424, 437
Bse3DI	GCAATG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	3 cut(s)	100, 275, 380
BseNI	ACTGG	4 cut(s)	163, 205, 424, 437
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	46, 176
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	23, 82, 347, 422
BspACI	CCGC	2 cut(s)	33, 230
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	3 cut(s)	99, 274, 381
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	3 cut(s)	31, 355, 430
BspQI	GCTCTTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	79
BsrI	ACTGG	4 cut(s)	163, 205, 424, 437
BssMI	GATC	4 cut(s)	23, 82, 347, 422
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	254, 310
Bst6I	CTCTTC	2 cut(s)	187, 321
BstDEI	CTNAG	4 cut(s)	86, 261, 389, 411
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	4 cut(s)	26, 85, 350, 425
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	4 cut(s)	23, 82, 347, 422
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	45, 244
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	3 cut(s)	23, 347, 422
BstYI	RGATCY	3 cut(s)	23, 347, 422
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	141
CsiI	ACCWGGT	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	4 cut(s)	136, 165, 408, 436
CviKI_1	RGCY	4 cut(s)	136, 165, 408, 436
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	4 cut(s)	86, 261, 389, 411
DpnI	GATC	4 cut(s)	25, 84, 349, 424
DpnII	GATC	4 cut(s)	23, 82, 347, 422
Eam1104I	CTCTTC	2 cut(s)	187, 321
EarI	CTCTTC	2 cut(s)	187, 321
EciI	GGCGGA	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	148
FaeI	CATG	1 cut(s)	56
FaiI	YATR	7 cut(s)	54, 62, 108, 110, 126, 169, 361
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	33, 36
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	33, 36
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	2 cut(s)	33, 36
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	2 cut(s)	46, 176
Hin1II	CATG	1 cut(s)	56
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	2 cut(s)	46, 176
HphI	GGTGA	3 cut(s)	35, 142, 260
Hpy166II	GTNNAC	2 cut(s)	328, 398
Hpy188I	TCNGA	2 cut(s)	264, 390
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	2 cut(s)	328, 398
HpyCH4III	ACNGT	2 cut(s)	254, 310
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	5 cut(s)	38, 56, 271, 328, 428
HpyF3I	CTNAG	4 cut(s)	86, 261, 389, 411
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	1 cut(s)	56
Kzo9I	GATC	4 cut(s)	23, 82, 347, 422
LguI	GCTCTTC	1 cut(s)	321
LpnPI	CCDG	9 cut(s)	59, 144, 171, 189, 218, 231, 258, 405, 418
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	3 cut(s)	23, 47, 280
MabI	ACCWGGT	1 cut(s)	244
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	2 cut(s)	91, 248
MalI	GATC	4 cut(s)	25, 84, 349, 424
MboI	GATC	4 cut(s)	23, 82, 347, 422
MboII	GAAGA	2 cut(s)	204, 308
MflI	RGATCY	3 cut(s)	23, 347, 422
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	1 cut(s)	115
MnlI	CCTC	2 cut(s)	281, 408
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	2 cut(s)	46, 176
MspR9I	CCNGG	2 cut(s)	47, 246
MvaI	CCWGG	1 cut(s)	246
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	4 cut(s)	23, 82, 347, 422
NlaIII	CATG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	34, 37
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	3 cut(s)	23, 347, 422
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	321
SatI	GCNGC	2 cut(s)	33, 36
Sau3AI	GATC	4 cut(s)	23, 82, 347, 422
ScrFI	CCNGG	2 cut(s)	47, 246
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	6 cut(s)	138, 190, 247, 292, 410, 448
SexAI	ACCWGGT	1 cut(s)	244
SfaNI	GCATC	3 cut(s)	23, 47, 280
SfcI	CTRYAG	1 cut(s)	426
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	2 cut(s)	33, 230
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	45, 244
TaaI	ACNGT	2 cut(s)	254, 310
TaiI	ACGT	1 cut(s)	448
TasI	AATT	1 cut(s)	115
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	235
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	248
TspRI	CASTG	1 cut(s)	148
Van91I	CCANNNNNTGG	1 cut(s)	245
VneI	GTGCAC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	397
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.