Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010414

Physical Location & Seq

Genomic Coordinates Reverse (-)

6074562 .. 6077692

Gene Structure 3131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0078600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGACGAAGAACCCCATCGCAACTGATTCTCTCCCGAAAGGATTTCATAAGAGAAGGACCTTCCCCAAATGGGTCTCTCAGATGCGCCCCAGAAATGGTTTCAGCTCAAATCCTCAAATAGACATCCACTCAGTGCTCTGTCTTTTCATGGCGGTTTCATTTCTCCTTTTGGAACAAGTACGGTTTAAGGCAGCTGATGCCGGAGACTGGAAGCTGTGGAAGTATGTGGACGAAGCTCAGTTTGGGCCTGGGCCGCCCATCAATTCGGTGTTTGTTAGGGAAAAATTAGTGAATGCAGATCAAAATTTACAAGAGACGTGTAAGTGGATGTCGGTCGAAAGCTGTCTAAGCTGGCTTCAGGAAGTGAAACCAAGATGTGAGCGTGTGGGGCCTTTGATAGTTGTTGGGCTTCCAAATGAATTTGCACAAACAAGAGAGTTGCAGATCCCATCGACCTTACCTTACCAGGAGTACCCTCCTGGTGTTGTGCTTGTACCTATGGCAAGCAGGACAGGAAAACCTTTTCGTACAACAAACCTGGTTGTTTTTGCACCTAAAAATGTTCCAAATGATTCTGAAAAGAATGGTTTTATCGCGTGTGGAGATGCGTTGATAGTGGATCTTGGGTGTCAGTCTAAATTCCATGAAGAGGTATGGCATGTTAGTTTGCTCTGCTGCGCCTGGAAAATGGTTTATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_III MutS_IV MutS_V

Protein Analysis

233

Amino Acids

26.45

Weight (kDa)

8.6

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17380 AT4G17380
fragaria_vesca	FvH4_5g19230 FvH4_5g19230
malus_domestica	MD04G1062200.v1.1
prunus_persica	Prupe.5G066100_v2.0.a1 Prupe.5G066100_v2.0.a1
pyrus_communis	pycom04g05580
rosa_chinensis	RchiOBHm_Chr7g0203731
rosa_laevigata	RLG00000003509
rosa_multiflora	Rmu_sc0001714.1_g000006 Rmu_sc0005354.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253590
rosa_rugosa	Rorug07G0078500 Rorug07G0078600 Rorug07G0078700
rosa_samantha	Rh7AG208200 Rh7BG207200 Rh7CG220400 Rh7DG215100
rosa_wichuraiana	Rw7G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	596
AciI	CCGC	2 cut(s)	152, 254
AclWI	GGATC	2 cut(s)	439, 627
AcsI	RAATTY	3 cut(s)	304, 419, 638
AcuI	CTGAAG	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	133
AfaI	GTAC	4 cut(s)	180, 473, 495, 529
AfiI	CCNNNNNNNGG	4 cut(s)	70, 95, 207, 649
AflIII	ACRYGT	1 cut(s)	317
AjiI	CACGTC	1 cut(s)	318
AjnI	CCWGG	5 cut(s)	247, 465, 478, 537, 680
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	6 cut(s)	105, 194, 214, 236, 342, 351
AluI	AGCT	6 cut(s)	105, 194, 214, 236, 342, 351
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	3 cut(s)	79, 198, 308
AlwI	GGATC	2 cut(s)	439, 627
AoxI	GGCC	3 cut(s)	245, 251, 389
ApeKI	GCWGC	2 cut(s)	191, 675
ApoI	RAATTY	3 cut(s)	304, 419, 638
AspLEI	GCGC	2 cut(s)	87, 680
AspS9I	GGNCC	4 cut(s)	57, 245, 251, 389
AvaII	GGWCC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	203, 662
BccI	CCATC	3 cut(s)	23, 266, 457
BciT130I	CCWGG	5 cut(s)	249, 467, 480, 539, 682
BcoDI	GTCTC	3 cut(s)	79, 198, 308
BisI	GCNGC	3 cut(s)	192, 254, 676
BlsI	GCNGC	3 cut(s)	193, 255, 677
Bme1390I	CCNGG	5 cut(s)	249, 467, 480, 539, 682
Bme18I	GGWCC	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	318
BmgT120I	GGNCC	4 cut(s)	57, 245, 251, 389
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	5 cut(s)	249, 467, 480, 539, 682
BmsI	GCATC	3 cut(s)	72, 187, 595
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 95, 207, 649
Bse1I	ACTGG	1 cut(s)	212
BseBI	CCWGG	5 cut(s)	249, 467, 480, 539, 682
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	2 cut(s)	123, 333
BseLI	CCNNNNNNNGG	4 cut(s)	70, 95, 207, 649
BseMII	CTCAG	3 cut(s)	92, 144, 251
BseNI	ACTGG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	203, 662
Bsh1236I	CGCG	1 cut(s)	596
Bsh1285I	CGRYCG	1 cut(s)	336
BshFI	GGCC	3 cut(s)	247, 253, 391
BsiEI	CGRYCG	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	4 cut(s)	70, 95, 207, 649
BsmAI	GTCTC	3 cut(s)	79, 198, 308
BsmBI	CGTCTC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	3 cut(s)	247, 253, 391
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	298, 444, 619
BspACI	CCGC	2 cut(s)	152, 254
BspANI	GGCC	3 cut(s)	247, 253, 391
BspCNI	CTCAG	3 cut(s)	91, 143, 250
BspFNI	CGCG	1 cut(s)	596
BspLI	GGNNCC	1 cut(s)	390
BspPI	GGATC	2 cut(s)	439, 627
BspTNI	GGTCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	3 cut(s)	298, 444, 619
Bst2UI	CCWGG	5 cut(s)	249, 467, 480, 539, 682
Bst4CI	ACNGT	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	642
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	353, 505
BstDEI	CTNAG	4 cut(s)	78, 130, 237, 347
BstF5I	GGATG	2 cut(s)	123, 333
BstFNI	CGCG	1 cut(s)	596
BstHHI	GCGC	2 cut(s)	87, 680
BstKTI	GATC	3 cut(s)	301, 447, 622
BstMAI	GTCTC	3 cut(s)	79, 198, 308
BstMBI	GATC	3 cut(s)	298, 444, 619
BstMCI	CGRYCG	1 cut(s)	336
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 253, 348, 388
BstNI	CCWGG	5 cut(s)	249, 467, 480, 539, 682
BstNSI	RCATGY	1 cut(s)	662
BstSCI	CCNGG	5 cut(s)	247, 465, 478, 537, 680
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	2 cut(s)	203, 662
BstX2I	RGATCY	2 cut(s)	444, 619
BstYI	RGATCY	2 cut(s)	444, 619
BsuRI	GGCC	3 cut(s)	247, 253, 391
BtrI	CACGTC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	123, 333
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	353, 505
CfoI	GCGC	2 cut(s)	87, 680
Cfr13I	GGNCC	4 cut(s)	57, 245, 251, 389
CsiI	ACCWGGT	1 cut(s)	537
Csp6I	GTAC	4 cut(s)	179, 472, 494, 528
CviAII	CATG	3 cut(s)	148, 644, 659
CviQI	GTAC	4 cut(s)	179, 472, 494, 528
DdeI	CTNAG	4 cut(s)	78, 130, 237, 347
DpnI	GATC	3 cut(s)	300, 446, 621
DpnII	GATC	3 cut(s)	298, 444, 619
DraIII	CACNNNGTG	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco31I	GGTCTC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	341
EcoO109I	RGGNCCY	2 cut(s)	57, 389
EcoRII	CCWGG	5 cut(s)	247, 465, 478, 537, 680
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	3 cut(s)	151, 647, 662
FaiI	YATR	7 cut(s)	48, 149, 225, 500, 645, 655, 660
FatI	CATG	3 cut(s)	147, 643, 658
Fnu4HI	GCNGC	3 cut(s)	192, 254, 676
FokI	GGATG	2 cut(s)	110, 340
Fsp4HI	GCNGC	3 cut(s)	192, 254, 676
GlaI	GCGC	2 cut(s)	86, 679
GluI	GCNGC	3 cut(s)	192, 254, 676
HaeIII	GGCC	3 cut(s)	247, 253, 391
HapII	CCGG	1 cut(s)	201
HhaI	GCGC	2 cut(s)	87, 680
Hin1II	CATG	3 cut(s)	151, 647, 662
Hin6I	GCGC	2 cut(s)	85, 678
HinP1I	GCGC	2 cut(s)	85, 678
HinfI	GANTC	2 cut(s)	26, 572
HpaII	CCGG	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	81, 577
Hpy188III	TCNNGA	2 cut(s)	34, 359
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	48, 70
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	4 cut(s)	296, 425, 442, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 253, 348, 388
HpyF3I	CTNAG	4 cut(s)	78, 130, 237, 347
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	3 cut(s)	151, 647, 662
HspAI	GCGC	2 cut(s)	85, 678
Kzo9I	GATC	3 cut(s)	298, 444, 619
Lsp1109I	GCAGC	2 cut(s)	203, 662
LweI	GCATC	3 cut(s)	72, 187, 595
MabI	ACCWGGT	1 cut(s)	537
MaeII	ACGT	1 cut(s)	317
MalI	GATC	3 cut(s)	300, 446, 621
MboI	GATC	3 cut(s)	298, 444, 619
MboII	GAAGA	2 cut(s)	19, 659
MflI	RGATCY	2 cut(s)	444, 619
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	5 cut(s)	262, 284, 304, 419, 638
MnlI	CCTC	3 cut(s)	123, 486, 643
MseI	TTAA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	5 cut(s)	249, 467, 480, 539, 682
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	5 cut(s)	249, 467, 480, 539, 682
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	4 cut(s)	197, 253, 348, 388
NdeII	GATC	3 cut(s)	298, 444, 619
NlaIII	CATG	3 cut(s)	151, 647, 662
NlaIV	GGNNCC	1 cut(s)	390
NspI	RCATGY	1 cut(s)	662
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	26, 572
PkrI	GCNGC	3 cut(s)	193, 255, 677
PpuMI	RGGWCCY	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	57
Psp6I	CCWGG	5 cut(s)	247, 465, 478, 537, 680
PspGI	CCWGG	5 cut(s)	247, 465, 478, 537, 680
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	4 cut(s)	57, 245, 251, 389
PspPPI	RGGWCCY	1 cut(s)	57
PsuI	RGATCY	2 cut(s)	444, 619
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	4 cut(s)	180, 473, 495, 529
RsaNI	GTAC	4 cut(s)	179, 472, 494, 528
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	3 cut(s)	192, 254, 676
Sau3AI	GATC	3 cut(s)	298, 444, 619
Sau96I	GGNCC	4 cut(s)	57, 245, 251, 389
ScrFI	CCNGG	5 cut(s)	249, 467, 480, 539, 682
SduI	GDGCHC	1 cut(s)	138
SexAI	ACCWGGT	1 cut(s)	537
SfaNI	GCATC	3 cut(s)	72, 187, 595
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	5 cut(s)	262, 284, 304, 419, 638
SsiI	CCGC	2 cut(s)	152, 254
StyD4I	CCNGG	5 cut(s)	247, 465, 478, 537, 680
TaaI	ACNGT	1 cut(s)	183
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	2 cut(s)	336, 452
TaqII	GACCGA	1 cut(s)	322
TasI	AATT	5 cut(s)	262, 284, 304, 419, 638
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	2 cut(s)	26, 572
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	138
TseI	GCWGC	2 cut(s)	191, 675
TspDTI	ATGAA	5 cut(s)	35, 136, 147, 432, 660
TspRI	CASTG	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	3 cut(s)	304, 419, 638
XceI	RCATGY	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.