Rmu_sc0005354.1_g000001

DNA mismatch repair protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005354.1
Physical Location & Seq
Reverse (-)
1 .. 8643
8643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005354.1_g000001.1.cds

Sequence Viewer

Length: 1794 bp
atggaagacgacggaggagagagatcgagcttcgtcatcggtctcatcgagaacagagccaaggaggttggagtggcagcattcgatttaaggtcggcttctctacatctatctcaatatattgagactagtagttcatatcagaatacaaaaactttgctgcaattctacgatcctatggtgattattgtttcccccaacaaactggcacctgatgggatggttggagtttcagaattggcggatagattttatgccacagtcaagaaggttgtaatggctcgtggttgctttgatgacactacgggtgctgtgttgattaaaaatctagcagccaaggaaccttcagcactaggattggatacttattacaagcagtactatctctgcttggccgctgcagcagctacaattaagtggtctaggcttcttcgtgccaatctattgcagcctttaaaagatattgagactataaatgctcgtctagattgcctggatgagctaatgagcaacgaacagctattctttggactctctcaggttctgcgcaaattcccaaaagagagtgatagagtactttgtcacttctgcttcaagccaaagaaaattacaaataaagttatgggtgttgataatgctagaaaaagccagctgttggtatcaagcattattctcctcaaaactgctctagacgctttgcctttactctcaagggctctcaaagatgcaaaaagttctcttcttgctaatgtttacaagtctgtgtgtgaaagtgagaaatatgctgctattaggaaaaggtttgttcccaattggattggagaggtgattgatgaagatgtgcttcatgcaagggtaccttttgtagcccgcacccagcagtgttttgctgtaaaggccggaattgatggacttttggatattgcacggagatcattttgtgatactagtgaagaaagtaataagcttctcaatgtcaaattgacagctatacataatcttgctaacaagtaccgcgaagatttcaagttccccaatttgaaactcacatttaacaataggcaaggtttttacttcagcattccacataagagcattgaggggaagcttcctagccagttcattcaggtgttgaaacacgggaacaatatacattgctcaactttggagcttgcttctctaaacgttagaaataagtctgcagctgcagaatgcttcctacggactgaagtttgcctggaagaattagtagacgccatacgagaggatgtttcagcactcacattacttgcagaggccttgtgccttctagatatgattgttaactcatttgcacataccatttccaataagcctgctgatcattatactagaccagaatttacagatgatggcccaatggcaattgaagctggaagacaccctatccttgagagcatacacaatgattttgttcccaacaacatctttttatcggaggcatcaaacatggtgctgattgtgggcccaaacatgagtggaaagagcacttatcttcagcaagtatgtcttatagttattcttgctcagatcggttgttatgttcctgctcgcttctcaactttgagggttgttgatcggatatttacaaggatgggtacagtggacaatcttgaatccaactctagtacgtttcaactcaaggaaggaccaagacatgttccacactatgggcttctattagcagaagtggcaggattaccaagctcggtgactgagacagccagaaacatcacatccaggatcacagaaaag

Protein Analysis

598

Amino Acids

66.58

Weight (kDa)

8.09

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 548
Acc65I GGTACC 1 cut(s) 856
AccB1I GGYRCC 2 cut(s) 208, 856
AccB7I CCANNNNNTGG 2 cut(s) 655, 1709
AccI GTMKAC 1 cut(s) 1251
AccII CGCG 1 cut(s) 1017
AciI CCGC 4 cut(s) 242, 396, 871, 1015
AclI AACGTT 1 cut(s) 1185
AclWI GGATC 2 cut(s) 167, 1790
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 2 cut(s) 551, 1379
AcuI CTGAAG 4 cut(s) 330, 1060, 1248, 1520
AcyI GRCGYC 1 cut(s) 1254
AfaI GTAC 6 cut(s) 380, 576, 858, 1013, 1639, 1669
AfiI CCNNNNNNNGG 2 cut(s) 655, 1709
AflIII ACRYGT 1 cut(s) 1696
AgsI TTSAA 7 cut(s) 595, 1027, 1042, 1135, 1409, 1655, 1676
AhlI ACTAGT 2 cut(s) 128, 947
AjnI CCWGG 3 cut(s) 492, 1236, 1778
Alw21I GWGCWC 1 cut(s) 1529
Alw26I GTCTC 4 cut(s) 47, 119, 461, 1751
AlwI GGATC 2 cut(s) 167, 1790
AlwNI CAGNNNCTG 1 cut(s) 544
AoxI GGCC 5 cut(s) 393, 897, 1296, 1393, 1504
ApaI GGGCCC 1 cut(s) 1508
ApoI RAATTY 2 cut(s) 551, 1379
Asp718I GGTACC 1 cut(s) 856
AspLEI GCGC 1 cut(s) 549
AspS9I GGNCC 4 cut(s) 1394, 1504, 1505, 1688
AsuHPI GGTGA 3 cut(s) 193, 838, 1762
AvaII GGWCC 1 cut(s) 1688
BaeGI GKGCMC 1 cut(s) 1508
BanI GGYRCC 2 cut(s) 208, 856
BanII GRGCYC 2 cut(s) 718, 1508
BauI CACGAG 1 cut(s) 282
BbsI GAAGAC 2 cut(s) 12, 1423
Bbv12I GWGCWC 1 cut(s) 1529
BccI CCATC 5 cut(s) 209, 214, 902, 1385, 1627
BciT130I CCWGG 3 cut(s) 494, 1238, 1780
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 1 cut(s) 1360
BcoDI GTCTC 4 cut(s) 47, 119, 461, 1751
BcuI ACTAGT 2 cut(s) 128, 947
BfmI CTRYAG 3 cut(s) 399, 1200, 1206
BfuI GTATCC 1 cut(s) 355
BmcAI AGTACT 2 cut(s) 380, 576
Bme1390I CCNGG 3 cut(s) 494, 1238, 1780
Bme18I GGWCC 1 cut(s) 1688
BmgT120I GGNCC 4 cut(s) 1394, 1504, 1505, 1688
BmiI GGNNCC 4 cut(s) 210, 342, 858, 1506
BmrFI CCNGG 3 cut(s) 494, 1238, 1780
BmsI GCATC 2 cut(s) 715, 1490
BpiI GAAGAC 2 cut(s) 12, 1423
BpuEI CTTGAG 3 cut(s) 694, 1451, 1664
BsaHI GRCGYC 1 cut(s) 1254
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 60, 336
Bsc4I CCNNNNNNNGG 2 cut(s) 655, 1709
Bse1I ACTGG 2 cut(s) 210, 1117
Bse3DI GCAATG 1 cut(s) 1153
BseBI CCWGG 3 cut(s) 494, 1238, 1780
BseDI CCNNGG 2 cut(s) 60, 336
BseGI GGATG 5 cut(s) 225, 502, 1273, 1638, 1775
BseLI CCNNNNNNNGG 2 cut(s) 655, 1709
BseMI GCAATG 1 cut(s) 1153
BseMII CTCAG 3 cut(s) 551, 1580, 1746
BseNI ACTGG 2 cut(s) 210, 1117
BseRI GAGGAG 2 cut(s) 30, 665
BseSI GKGCMC 1 cut(s) 1508
BseYI CCCAGC 1 cut(s) 876
Bsh1236I CGCG 1 cut(s) 1017
BshFI GGCC 5 cut(s) 395, 899, 1298, 1395, 1506
BshNI GGYRCC 2 cut(s) 208, 856
BsiHKAI GWGCWC 1 cut(s) 1529
BsiSI CCGG 1 cut(s) 900
BslI CCNNNNNNNGG 2 cut(s) 655, 1709
BsmAI GTCTC 4 cut(s) 47, 119, 461, 1751
BsmI GAATGC 3 cut(s) 80, 1080, 1217
BsnI GGCC 5 cut(s) 395, 899, 1298, 1395, 1506
Bso31I GGTCTC 1 cut(s) 47
Bsp120I GGGCCC 1 cut(s) 1504
Bsp1286I GDGCHC 3 cut(s) 718, 1508, 1529
Bsp143I GATC 7 cut(s) 23, 172, 932, 1360, 1569, 1615, 1782
BspACI CCGC 4 cut(s) 242, 396, 871, 1015
BspANI GGCC 5 cut(s) 395, 899, 1298, 1395, 1506
BspCNI CTCAG 3 cut(s) 550, 1579, 1747
BspFNI CGCG 1 cut(s) 1017
BspLI GGNNCC 4 cut(s) 210, 342, 858, 1506
BspMAI CTGCAG 3 cut(s) 403, 1204, 1210
BspPI GGATC 2 cut(s) 167, 1790
BspT107I GGYRCC 2 cut(s) 208, 856
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 1153
BsrI ACTGG 2 cut(s) 210, 1117
BssECI CCNNGG 2 cut(s) 60, 336
BssMI GATC 7 cut(s) 23, 172, 932, 1360, 1569, 1615, 1782
BssNI GRCGYC 1 cut(s) 1254
BssSI CACGAG 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 60, 336
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 3 cut(s) 494, 1238, 1780
Bst4CI ACNGT 2 cut(s) 262, 1642
Bst6I CTCTTC 1 cut(s) 744
BstACI GRCGYC 1 cut(s) 1254
BstC8I GCNNGC 5 cut(s) 650, 871, 1173, 1356, 1591
BstDEI CTNAG 3 cut(s) 537, 1566, 1755
BstF5I GGATG 5 cut(s) 225, 502, 1273, 1638, 1775
BstFNI CGCG 1 cut(s) 1017
BstHHI GCGC 1 cut(s) 549
BstKTI GATC 7 cut(s) 26, 175, 935, 1363, 1572, 1618, 1785
BstMAI GTCTC 4 cut(s) 47, 119, 461, 1751
BstMBI GATC 7 cut(s) 23, 172, 932, 1360, 1569, 1615, 1782
BstMWI GCNNNNNNNGC 6 cut(s) 401, 404, 692, 896, 1409, 1730
BstNI CCWGG 3 cut(s) 494, 1238, 1780
BstNSI RCATGY 1 cut(s) 1700
BstSCI CCNGG 3 cut(s) 492, 1236, 1778
BstSFI CTRYAG 3 cut(s) 399, 1200, 1206
BstSLI GKGCMC 1 cut(s) 1508
BstUI CGCG 1 cut(s) 1017
BstV2I GAAGAC 2 cut(s) 12, 1423
BstXI CCANNNNNNTGG 1 cut(s) 205
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 5 cut(s) 395, 899, 1298, 1395, 1506
BtsCI GGATG 5 cut(s) 225, 502, 1273, 1638, 1775
BtsI GCAGTG 1 cut(s) 887
BtsIMutI CAGTG 2 cut(s) 887, 1647
Cac8I GCNNGC 5 cut(s) 650, 871, 1173, 1356, 1591
CaiI CAGNNNCTG 1 cut(s) 544
CfoI GCGC 1 cut(s) 549
Cfr13I GGNCC 4 cut(s) 1394, 1504, 1505, 1688
CseI GACGC 2 cut(s) 701, 1262
Csp6I GTAC 6 cut(s) 379, 575, 857, 1012, 1638, 1668
CviAII CATG 4 cut(s) 848, 1489, 1513, 1697
CviQI GTAC 6 cut(s) 379, 575, 857, 1012, 1638, 1668
DdeI CTNAG 3 cut(s) 537, 1566, 1755
DpnI GATC 7 cut(s) 25, 174, 934, 1362, 1571, 1617, 1784
DpnII GATC 7 cut(s) 23, 172, 932, 1360, 1569, 1615, 1782
DraI TTTAAA 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 744
EarI CTCTTC 1 cut(s) 744
EciI GGCGGA 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 60, 336
Eco147I AGGCCT 1 cut(s) 1298
Eco24I GRGCYC 2 cut(s) 718, 1508
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 1688
Eco57I CTGAAG 4 cut(s) 330, 1060, 1248, 1520
EcoRII CCWGG 3 cut(s) 492, 1236, 1778
EcoT14I CCWWGG 2 cut(s) 60, 336
EcoT38I GRGCYC 2 cut(s) 718, 1508
ErhI CCWWGG 2 cut(s) 60, 336
FaeI CATG 4 cut(s) 851, 1492, 1516, 1700
FalI AAGNNNNNCTT 8 cut(s) 82, 114, 828, 860, 844, 876, 1533, 1565
FatI CATG 4 cut(s) 847, 1488, 1512, 1696
FauI CCCGC 1 cut(s) 878
FbaI TGATCA 1 cut(s) 1360
FblI GTMKAC 1 cut(s) 1251
FokI GGATG 5 cut(s) 232, 509, 1280, 1645, 1762
FriOI GRGCYC 2 cut(s) 718, 1508
FspI TGCGCA 1 cut(s) 548
GlaI GCGC 1 cut(s) 548
GsaI CCCAGC 1 cut(s) 880
HaeIII GGCC 5 cut(s) 395, 899, 1298, 1395, 1506
HapII CCGG 1 cut(s) 900
HgaI GACGC 2 cut(s) 701, 1262
HhaI GCGC 1 cut(s) 549
Hin1I GRCGYC 1 cut(s) 1254
Hin1II CATG 4 cut(s) 851, 1492, 1516, 1700
Hin6I GCGC 1 cut(s) 547
HinP1I GCGC 1 cut(s) 547
HincII GTYRAC 1 cut(s) 1324
HindII GTYRAC 1 cut(s) 1324
HindIII AAGCTT 2 cut(s) 965, 1106
HinfI GANTC 2 cut(s) 531, 1655
HpaI GTTAAC 1 cut(s) 1324
HpaII CCGG 1 cut(s) 900
HphI GGTGA 3 cut(s) 193, 838, 1762
Hpy166II GTNNAC 4 cut(s) 754, 1252, 1324, 1645
Hpy188I TCNGA 5 cut(s) 144, 235, 1477, 1569, 1620
Hpy188III TCNNGA 6 cut(s) 49, 265, 485, 689, 1310, 1652
Hpy8I GTNNAC 4 cut(s) 754, 1252, 1324, 1645
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 4 cut(s) 262, 354, 1316, 1679
HpyCH4III ACNGT 2 cut(s) 262, 1642
HpyCH4IV ACGT 2 cut(s) 1185, 1670
HpyF10VI GCNNNNNNNGC 6 cut(s) 401, 404, 692, 896, 1409, 1730
HpyF3I CTNAG 3 cut(s) 537, 1566, 1755
HpySE526I ACGT 2 cut(s) 1185, 1670
Hsp92I GRCGYC 1 cut(s) 1254
Hsp92II CATG 4 cut(s) 851, 1492, 1516, 1700
HspAI GCGC 1 cut(s) 547
KpnI GGTACC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 1360
KspAI GTTAAC 1 cut(s) 1324
Kzo9I GATC 7 cut(s) 23, 172, 932, 1360, 1569, 1615, 1782
LmnI GCTCC 1 cut(s) 1168
LweI GCATC 2 cut(s) 715, 1490
MaeII ACGT 2 cut(s) 1185, 1670
MaeIII GTNAC 2 cut(s) 581, 1750
MalI GATC 7 cut(s) 25, 174, 934, 1362, 1571, 1617, 1784
MboI GATC 7 cut(s) 23, 172, 932, 1360, 1569, 1615, 1782
MboII GAAGA 9 cut(s) 17, 422, 731, 848, 965, 1031, 1253, 1428, 1526
MfeI CAATTG 2 cut(s) 811, 1404
MhlI GDGCHC 3 cut(s) 718, 1508, 1529
MlyI GAGTC 1 cut(s) 525
MmeI TCCRAC 3 cut(s) 49, 205, 1683
MnlI CCTC 9 cut(s) 8, 58, 686, 817, 1093, 1258, 1288, 1471, 1599
MseI TTAA 6 cut(s) 89, 321, 414, 455, 1053, 1323
MslI CAYNNNNRTG 1 cut(s) 1127
MspA1I CMGCKG 3 cut(s) 398, 652, 1205
MspI CCGG 1 cut(s) 900
MspR9I CCNGG 3 cut(s) 494, 1238, 1780
MunI CAATTG 2 cut(s) 811, 1404
Mva1269I GAATGC 3 cut(s) 80, 1080, 1217
MvaI CCWGG 3 cut(s) 494, 1238, 1780
MvnI CGCG 1 cut(s) 1017
MwoI GCNNNNNNNGC 6 cut(s) 401, 404, 692, 896, 1409, 1730
NdeII GATC 7 cut(s) 23, 172, 932, 1360, 1569, 1615, 1782
NlaIII CATG 4 cut(s) 851, 1492, 1516, 1700
NlaIV GGNNCC 4 cut(s) 210, 342, 858, 1506
NmuCI GTSAC 2 cut(s) 581, 1750
NsbI TGCGCA 1 cut(s) 548
NspI RCATGY 1 cut(s) 1700
PceI AGGCCT 1 cut(s) 1298
PciI ACATGT 1 cut(s) 1696
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 3 cut(s) 80, 1080, 1217
PfeI GAWTC 1 cut(s) 1655
PflMI CCANNNNNTGG 2 cut(s) 655, 1709
PfoI TCCNGGA 1 cut(s) 1778
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
PscI ACATGT 1 cut(s) 1696
Psp1406I AACGTT 1 cut(s) 1185
Psp6I CCWGG 3 cut(s) 492, 1236, 1778
PspFI CCCAGC 1 cut(s) 876
PspGI CCWGG 3 cut(s) 492, 1236, 1778
PspN4I GGNNCC 4 cut(s) 210, 342, 858, 1506
PspOMI GGGCCC 1 cut(s) 1504
PspPI GGNCC 4 cut(s) 1394, 1504, 1505, 1688
PstI CTGCAG 3 cut(s) 403, 1204, 1210
PstNI CAGNNNCTG 1 cut(s) 544
PvuII CAGCTG 2 cut(s) 652, 1205
RsaI GTAC 6 cut(s) 380, 576, 858, 1013, 1639, 1669
RsaNI GTAC 6 cut(s) 379, 575, 857, 1012, 1638, 1668
RseI CAYNNNNRTG 1 cut(s) 1127
SaqAI TTAA 6 cut(s) 89, 321, 414, 455, 1053, 1323
Sau3AI GATC 7 cut(s) 23, 172, 932, 1360, 1569, 1615, 1782
Sau96I GGNCC 4 cut(s) 1394, 1504, 1505, 1688
ScaI AGTACT 2 cut(s) 380, 576
SchI GAGTC 1 cut(s) 525
ScrFI CCNGG 3 cut(s) 494, 1238, 1780
SduI GDGCHC 3 cut(s) 718, 1508, 1529
SfaNI GCATC 2 cut(s) 715, 1490
SfcI CTRYAG 3 cut(s) 399, 1200, 1206
SinI GGWCC 1 cut(s) 1688
SmiMI CAYNNNNRTG 1 cut(s) 1127
SmlI CTYRAG 3 cut(s) 709, 1430, 1679
SmoI CTYRAG 3 cut(s) 709, 1430, 1679
SpeI ACTAGT 2 cut(s) 128, 947
SseBI AGGCCT 1 cut(s) 1298
SsiI CCGC 4 cut(s) 242, 396, 871, 1015
StuI AGGCCT 1 cut(s) 1298
StyD4I CCNGG 3 cut(s) 492, 1236, 1778
StyI CCWWGG 2 cut(s) 60, 336
TaaI ACNGT 2 cut(s) 262, 1642
TaiI ACGT 2 cut(s) 1188, 1673
TaqI TCGA 3 cut(s) 26, 48, 84
TaqII GACCGA 1 cut(s) 29
TatI WGTACW 2 cut(s) 378, 574
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 1 cut(s) 1655
Tru1I TTAA 6 cut(s) 89, 321, 414, 455, 1053, 1323
Tru9I TTAA 6 cut(s) 89, 321, 414, 455, 1053, 1323
TscAI CASTG 2 cut(s) 887, 1647
TseFI GTSAC 2 cut(s) 581, 1750
Tsp45I GTSAC 2 cut(s) 581, 1750
TspDTI ATGAA 4 cut(s) 126, 836, 849, 1111
TspGWI ACGGA 3 cut(s) 27, 943, 1237
TspRI CASTG 2 cut(s) 887, 1647
Van91I CCANNNNNTGG 2 cut(s) 655, 1709
VpaK11BI GGWCC 1 cut(s) 1688
XapI RAATTY 2 cut(s) 551, 1379
XbaI TCTAGA 3 cut(s) 484, 688, 1309
XceI RCATGY 1 cut(s) 1700
XmiI GTMKAC 1 cut(s) 1251
ZrmI AGTACT 2 cut(s) 380, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.