Prupe.5G079500_v2.0.a1

transferase CAF17 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
9346730 .. 9350616
3887 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G079500.4

Sequence Viewer

Length: 1209 bp
ATGCACCGTTTCAAGCTCTCCCTGCGGTTCCCCAAATCCATTTCCTCCAGTTACAGAGCCATCCACGACAAAACCCAGTTCGATAACGCTGGGCCCGTGGCTTCGGTCCTCAAGTCCCGGGCGGTGGTCCGGTTCCGAGGTCCAGACACGGTCAAGTTTCTTCAGGGTCTGTTGACCAACGATGTACGGAGGTTCGGTGAGGCCGTGGGTGAAAAGACCTCGACTTTGCCCACGCCCAATTTGCCCACTGCGTCTGAAGCGCCCATGTACGCCGCGCTGTTGACCCCCCAGGGGAGGTTCCTGTACGATTTCTTCTTGTACGCCCCGCCCAGGCCCGATACCAAGCTTGATAAGACCGGGTCGGGACCCGGGCCCGACCCAGATGAAGCGTTGGAGCTCTTTGCGGACGTGGATGCTTCGGTTTTGGATGAGCTCTTGAGCACCTTGAAGAAATATCGTTTGAGGTCTAAGGTTGATATCGAGAATGTGGCAGAAGAGTTATATTGCTGGCAGCGTTTTGGGGGAAACCTCTCCGAAAAATCCTCCTCTGTGGAAGAACCGGAGGCTGCTAGTGTTGGCTGGGGTGCTGGTGTTGATCCTGCAGGAATGTCAGCTTCACATGGGGGTCCTCTTGGATGGCAGTGGTTTAAGGATCCTAGATTGGATTGCCTTGGTTTTAGGGGGATCTTCCCATCTAATACTACACCACCTTTGGTTGAAGCTGACAAAGAAACAGATGAGCAGAATTACTTTCTATGGAGAATAGAGAACGGAGTTGCAGAAGGCTCAACTGAGATCCCAAAAGGTGAGGCAATTCCTCTTGAATATAATCTGGTGGGTCTCAATGCAATTAGCTTTGACAAAGGGTGTTATGTGGGCCAAGAGCTTGTAGCTCGCACACACCACCGAGGGGTGATTCGCAAGCGCTTGCTTCCTTTAAGATTTGTGAAGGACAGTGGAGAAGAAGCGGAGCAGAAAGTTGCCCCGGGTTCCGAAGTGATTGATAGTGTATCCGAAAAGAAGGTTGGTACCATCACCACTCAACTTGGTTGTCGTGGGCTGGGTGTCTTGCGTTTGGACGAAGCCTTCAAGGGATCAAATACATTGAAAATACAAGGACAGAAAGATATAAAGGTTGAGGCTATTAGACCACATTGGTGGCCTGCCGAATGGCTTCAAGAGCCTCAACATCAAAGTGCAGCTGTTTAG

Protein Analysis

403

Amino Acids

44.4

Weight (kDa)

5.92

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1028
AccB1I GGYRCC 1 cut(s) 1028
AccII CGCG 1 cut(s) 275
AciI CCGC 6 cut(s) 25, 122, 273, 326, 404, 968
AclWI GGATC 6 cut(s) 590, 647, 660, 692, 790, 1102
AcuI CTGAAG 2 cut(s) 146, 276
AfaI GTAC 5 cut(s) 186, 269, 305, 320, 1030
AfeI AGCGCT 1 cut(s) 926
AfiI CCNNNNNNNGG 5 cut(s) 124, 291, 294, 330, 910
AgsI TTSAA 7 cut(s) 13, 448, 719, 824, 1090, 1108, 1178
AjiI CACGTC 1 cut(s) 409
AjnI CCWGG 2 cut(s) 288, 329
AjuI GAANNNNNNNTTGG 2 cut(s) 1008, 1040
AleI CACNNNNGTG 1 cut(s) 1156
Alw21I GWGCWC 3 cut(s) 399, 435, 443
Alw26I GTCTC 1 cut(s) 845
AlwI GGATC 6 cut(s) 590, 647, 660, 692, 790, 1102
AlwNI CAGNNNCTG 1 cut(s) 169
Ama87I CYCGRG 3 cut(s) 117, 368, 985
Aor51HI AGCGCT 1 cut(s) 926
AoxI GGCC 6 cut(s) 92, 201, 332, 371, 877, 1160
ApaI GGGCCC 2 cut(s) 96, 375
ApeKI GCWGC 3 cut(s) 511, 566, 1199
ArsI GACNNNNNNTTYG 2 cut(s) 208, 240
Asp700I GAANNNNTTC 1 cut(s) 1173
Asp718I GGTACC 1 cut(s) 1028
AspLEI GCGC 3 cut(s) 262, 277, 927
AsuC2I CCSGG 7 cut(s) 118, 119, 358, 369, 370, 986, 987
AsuHPI GGTGA 5 cut(s) 209, 221, 818, 925, 1027
AvaI CYCGRG 3 cut(s) 117, 368, 985
AvaII GGWCC 5 cut(s) 106, 127, 140, 365, 626
BaeGI GKGCMC 2 cut(s) 96, 375
BamHI GGATCC 1 cut(s) 652
BanI GGYRCC 1 cut(s) 1028
BanII GRGCYC 4 cut(s) 96, 375, 399, 435
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
Bbv12I GWGCWC 3 cut(s) 399, 435, 443
BbvI GCAGC 2 cut(s) 523, 553
BccI CCATC 4 cut(s) 68, 630, 700, 1040
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 2 cut(s) 290, 331
BciVI GTATCC 1 cut(s) 1021
BcnI CCSGG 7 cut(s) 118, 119, 358, 369, 370, 986, 987
BcoDI GTCTC 1 cut(s) 845
BfaI CTAG 2 cut(s) 570, 657
BfmI CTRYAG 1 cut(s) 600
BfoI RGCGCY 2 cut(s) 263, 928
BfuI GTATCC 1 cut(s) 1021
BisI GCNGC 4 cut(s) 273, 512, 567, 1200
BlsI GCNGC 4 cut(s) 274, 513, 568, 1201
Bme1390I CCNGG 9 cut(s) 118, 119, 290, 331, 358, 369, 370, 986, 987
Bme18I GGWCC 5 cut(s) 106, 127, 140, 365, 626
BmeT110I CYCGRG 3 cut(s) 117, 368, 985
BmgBI CACGTC 1 cut(s) 409
BmrFI CCNGG 9 cut(s) 118, 119, 290, 331, 358, 369, 370, 986, 987
BmrI ACTGGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 31
BpuEI CTTGAG 2 cut(s) 95, 457
BpuMI CCSGG 7 cut(s) 118, 119, 358, 369, 370, 986, 987
BsaI GGTCTC 1 cut(s) 845
BsaWI WCCGGW 2 cut(s) 129, 559
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 291, 294, 330, 910
Bse1I ACTGG 2 cut(s) 48, 76
BseBI CCWGG 2 cut(s) 290, 331
BseGI GGATG 4 cut(s) 60, 418, 433, 641
BseLI CCNNNNNNNGG 5 cut(s) 124, 291, 294, 330, 910
BseMII CTCAG 1 cut(s) 783
BseNI ACTGG 2 cut(s) 48, 76
BseRI GAGGAG 1 cut(s) 535
BseSI GKGCMC 2 cut(s) 96, 375
BseXI GCAGC 2 cut(s) 523, 553
BseYI CCCAGC 3 cut(s) 89, 579, 1060
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 6 cut(s) 94, 203, 334, 373, 879, 1162
BshNI GGYRCC 1 cut(s) 1028
BsiHKAI GWGCWC 3 cut(s) 399, 435, 443
BsiHKCI CYCGRG 3 cut(s) 117, 368, 985
BsiSI CCGG 6 cut(s) 118, 130, 357, 369, 560, 986
BslFI GGGAC 2 cut(s) 100, 378
BslI CCNNNNNNNGG 5 cut(s) 124, 291, 294, 330, 910
BsmAI GTCTC 1 cut(s) 845
BsmFI GGGAC 2 cut(s) 100, 378
BsnI GGCC 6 cut(s) 94, 203, 334, 373, 879, 1162
Bso31I GGTCTC 1 cut(s) 845
BsoBI CYCGRG 3 cut(s) 117, 368, 985
Bsp120I GGGCCC 2 cut(s) 92, 371
Bsp1286I GDGCHC 5 cut(s) 96, 375, 399, 435, 443
Bsp143I GATC 5 cut(s) 595, 652, 684, 795, 1094
BspACI CCGC 6 cut(s) 25, 122, 273, 326, 404, 968
BspANI GGCC 6 cut(s) 94, 203, 334, 373, 879, 1162
BspCNI CTCAG 1 cut(s) 784
BspFNI CGCG 1 cut(s) 275
BspMAI CTGCAG 1 cut(s) 604
BspPI GGATC 6 cut(s) 590, 647, 660, 692, 790, 1102
BspT107I GGYRCC 1 cut(s) 1028
BspTNI GGTCTC 1 cut(s) 845
BsrI ACTGG 2 cut(s) 48, 76
BssMI GATC 5 cut(s) 595, 652, 684, 795, 1094
BssT1I CCWWGG 1 cut(s) 670
Bst2UI CCWGG 2 cut(s) 290, 331
Bst4CI ACNGT 3 cut(s) 8, 151, 956
Bst6I CTCTTC 1 cut(s) 489
BstC8I GCNNGC 5 cut(s) 509, 895, 923, 929, 1164
BstDEI CTNAG 2 cut(s) 468, 792
BstDSI CCRYGG 2 cut(s) 96, 204
BstF5I GGATG 4 cut(s) 60, 418, 433, 641
BstFNI CGCG 1 cut(s) 275
BstH2I RGCGCY 2 cut(s) 263, 928
BstHHI GCGC 3 cut(s) 262, 277, 927
BstKTI GATC 5 cut(s) 598, 655, 687, 798, 1097
BstMAI GTCTC 1 cut(s) 845
BstMBI GATC 5 cut(s) 595, 652, 684, 795, 1094
BstMWI GCNNNNNNNGC 4 cut(s) 22, 241, 257, 1180
BstNI CCWGG 2 cut(s) 290, 331
BstSCI CCNGG 9 cut(s) 116, 117, 288, 329, 356, 367, 368, 984, 985
BstSFI CTRYAG 1 cut(s) 600
BstSLI GKGCMC 2 cut(s) 96, 375
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 523, 553
BstX2I RGATCY 3 cut(s) 652, 684, 795
BstXI CCANNNNNNTGG 1 cut(s) 1158
BstYI RGATCY 3 cut(s) 652, 684, 795
BsuI GTATCC 1 cut(s) 1021
BsuRI GGCC 6 cut(s) 94, 203, 334, 373, 879, 1162
BtgI CCRYGG 2 cut(s) 96, 204
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 4 cut(s) 60, 418, 433, 641
BtsI GCAGTG 2 cut(s) 246, 647
BtsIMutI CAGTG 3 cut(s) 246, 647, 961
Cac8I GCNNGC 5 cut(s) 509, 895, 923, 929, 1164
CaiI CAGNNNCTG 1 cut(s) 169
CfoI GCGC 3 cut(s) 262, 277, 927
Cfr9I CCCGGG 3 cut(s) 117, 368, 985
CseI GACGC 1 cut(s) 240
Csp6I GTAC 5 cut(s) 185, 268, 304, 319, 1029
CspCI CAANNNNNGTGG 2 cut(s) 1027, 1062
CviAII CATG 2 cut(s) 265, 620
CviQI GTAC 5 cut(s) 185, 268, 304, 319, 1029
DdeI CTNAG 2 cut(s) 468, 792
DpnI GATC 5 cut(s) 597, 654, 686, 797, 1096
DpnII GATC 5 cut(s) 595, 652, 684, 795, 1094
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Ecl136II GAGCTC 2 cut(s) 397, 433
Eco130I CCWWGG 1 cut(s) 670
Eco24I GRGCYC 4 cut(s) 96, 375, 399, 435
Eco31I GGTCTC 1 cut(s) 845
Eco32I GATATC 1 cut(s) 478
Eco47I GGWCC 5 cut(s) 106, 127, 140, 365, 626
Eco47III AGCGCT 1 cut(s) 926
Eco53kI GAGCTC 2 cut(s) 397, 433
Eco57I CTGAAG 2 cut(s) 146, 276
Eco88I CYCGRG 3 cut(s) 117, 368, 985
EcoICRI GAGCTC 2 cut(s) 397, 433
EcoO109I RGGNCCY 2 cut(s) 365, 626
EcoRII CCWGG 2 cut(s) 288, 329
EcoRV GATATC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 670
EcoT38I GRGCYC 4 cut(s) 96, 375, 399, 435
ErhI CCWWGG 1 cut(s) 670
FaeI CATG 2 cut(s) 268, 623
FaiI YATR 7 cut(s) 266, 502, 621, 757, 828, 873, 1130
FaqI GGGAC 2 cut(s) 100, 378
FatI CATG 2 cut(s) 264, 619
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 4 cut(s) 273, 512, 567, 1200
FokI GGATG 4 cut(s) 47, 425, 440, 648
FriOI GRGCYC 4 cut(s) 96, 375, 399, 435
Fsp4HI GCNGC 4 cut(s) 273, 512, 567, 1200
FspBI CTAG 2 cut(s) 570, 657
GlaI GCGC 3 cut(s) 261, 276, 926
GluI GCNGC 4 cut(s) 273, 512, 567, 1200
GsaI CCCAGC 3 cut(s) 93, 583, 1064
GsuI CTGGAG 1 cut(s) 31
HaeII RGCGCY 2 cut(s) 263, 928
HaeIII GGCC 6 cut(s) 94, 203, 334, 373, 879, 1162
HapII CCGG 6 cut(s) 118, 130, 357, 369, 560, 986
HgaI GACGC 1 cut(s) 240
HhaI GCGC 3 cut(s) 262, 277, 927
Hin1II CATG 2 cut(s) 268, 623
Hin6I GCGC 3 cut(s) 260, 275, 925
HinP1I GCGC 3 cut(s) 260, 275, 925
HincII GTYRAC 2 cut(s) 174, 282
HindII GTYRAC 2 cut(s) 174, 282
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 1 cut(s) 916
HpaII CCGG 6 cut(s) 118, 130, 357, 369, 560, 986
HphI GGTGA 5 cut(s) 209, 221, 818, 925, 1027
Hpy166II GTNNAC 2 cut(s) 174, 282
Hpy188I TCNGA 5 cut(s) 137, 256, 535, 994, 1015
Hpy188III TCNNGA 6 cut(s) 143, 363, 436, 481, 821, 1178
Hpy8I GTNNAC 2 cut(s) 174, 282
HpyAV CCTTC 4 cut(s) 776, 943, 1015, 1096
HpyCH4III ACNGT 3 cut(s) 8, 151, 956
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 5 cut(s) 4, 602, 779, 848, 1199
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 241, 257, 1180
HpyF3I CTNAG 2 cut(s) 468, 792
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 2 cut(s) 268, 623
HspAI GCGC 3 cut(s) 260, 275, 925
KflI GGGWCCC 1 cut(s) 365
KpnI GGTACC 1 cut(s) 1032
Kzo9I GATC 5 cut(s) 595, 652, 684, 795, 1094
LmnI GCTCC 2 cut(s) 394, 970
Lsp1109I GCAGC 2 cut(s) 523, 553
LweI GCATC 1 cut(s) 403
MaeI CTAG 2 cut(s) 570, 657
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 50
MalI GATC 5 cut(s) 597, 654, 686, 797, 1096
MboI GATC 5 cut(s) 595, 652, 684, 795, 1094
MboII GAAGA 7 cut(s) 152, 304, 460, 506, 566, 679, 974
MflI RGATCY 3 cut(s) 652, 684, 795
MhlI GDGCHC 5 cut(s) 96, 375, 399, 435, 443
MluCI AATT 4 cut(s) 238, 745, 813, 849
MmeI TCCRAC 1 cut(s) 372
MroXI GAANNNNTTC 1 cut(s) 1173
MseI TTAA 2 cut(s) 648, 938
MslI CAYNNNNRTG 2 cut(s) 1156, 1194
MspA1I CMGCKG 1 cut(s) 1202
MspI CCGG 6 cut(s) 118, 130, 357, 369, 560, 986
MspR9I CCNGG 9 cut(s) 118, 119, 290, 331, 358, 369, 370, 986, 987
MvaI CCWGG 2 cut(s) 290, 331
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 4 cut(s) 22, 241, 257, 1180
NciI CCSGG 7 cut(s) 118, 119, 358, 369, 370, 986, 987
NdeII GATC 5 cut(s) 595, 652, 684, 795, 1094
NlaIII CATG 2 cut(s) 268, 623
OliI CACNNNNGTG 1 cut(s) 1156
PasI CCCWGGG 1 cut(s) 289
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 201
PdmI GAANNNNTTC 1 cut(s) 1173
PfeI GAWTC 1 cut(s) 916
PflFI GACNNNGTC 2 cut(s) 149, 358
PkrI GCNGC 4 cut(s) 274, 513, 568, 1201
PpuMI RGGWCCY 2 cut(s) 365, 626
Psp124BI GAGCTC 2 cut(s) 399, 435
Psp5II RGGWCCY 2 cut(s) 365, 626
Psp6I CCWGG 2 cut(s) 288, 329
PspFI CCCAGC 3 cut(s) 89, 579, 1060
PspGI CCWGG 2 cut(s) 288, 329
PspOMI GGGCCC 2 cut(s) 92, 371
PspPPI RGGWCCY 2 cut(s) 365, 626
PstI CTGCAG 1 cut(s) 604
PstNI CAGNNNCTG 1 cut(s) 169
PsuI RGATCY 3 cut(s) 652, 684, 795
PsyI GACNNNGTC 2 cut(s) 149, 358
PvuII CAGCTG 1 cut(s) 1202
RsaI GTAC 5 cut(s) 186, 269, 305, 320, 1030
RsaNI GTAC 5 cut(s) 185, 268, 304, 319, 1029
RseI CAYNNNNRTG 2 cut(s) 1156, 1194
SacI GAGCTC 2 cut(s) 399, 435
SaqAI TTAA 2 cut(s) 648, 938
SatI GCNGC 4 cut(s) 273, 512, 567, 1200
Sau3AI GATC 5 cut(s) 595, 652, 684, 795, 1094
SbfI CCTGCAGG 1 cut(s) 604
ScrFI CCNGG 9 cut(s) 118, 119, 290, 331, 358, 369, 370, 986, 987
SdaI CCTGCAGG 1 cut(s) 604
SduI GDGCHC 5 cut(s) 96, 375, 399, 435, 443
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 600
SinI GGWCC 5 cut(s) 106, 127, 140, 365, 626
SmaI CCCGGG 3 cut(s) 119, 370, 987
SmiMI CAYNNNNRTG 2 cut(s) 1156, 1194
SmlI CTYRAG 2 cut(s) 110, 436
SmoI CTYRAG 2 cut(s) 110, 436
Sse8387I CCTGCAGG 1 cut(s) 604
Sse9I AATT 4 cut(s) 238, 745, 813, 849
SsiI CCGC 6 cut(s) 25, 122, 273, 326, 404, 968
SspMI CTAG 2 cut(s) 570, 657
SstI GAGCTC 2 cut(s) 399, 435
StyD4I CCNGG 9 cut(s) 116, 117, 288, 329, 356, 367, 368, 984, 985
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 3 cut(s) 8, 151, 956
TaiI ACGT 1 cut(s) 411
TaqI TCGA 3 cut(s) 81, 221, 480
TaqII GACCGA 1 cut(s) 94
TasI AATT 4 cut(s) 238, 745, 813, 849
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 1 cut(s) 916
Tru1I TTAA 2 cut(s) 648, 938
Tru9I TTAA 2 cut(s) 648, 938
TscAI CASTG 3 cut(s) 253, 647, 961
TseI GCWGC 3 cut(s) 511, 566, 1199
TspDTI ATGAA 1 cut(s) 399
TspGWI ACGGA 2 cut(s) 202, 786
TspMI CCCGGG 3 cut(s) 117, 368, 985
TspRI CASTG 3 cut(s) 253, 647, 961
Tth111I GACNNNGTC 2 cut(s) 149, 358
VpaK11BI GGWCC 5 cut(s) 106, 127, 140, 365, 626
XmaI CCCGGG 3 cut(s) 117, 368, 985
XmnI GAANNNNTTC 1 cut(s) 1173
XspI CTAG 2 cut(s) 570, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.