Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004121

Physical Location & Seq

Genomic Coordinates Reverse (-)

4899026 .. 4899349

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0064900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTCCATCCGTCTAGGCAGTGTTCCGACCATAGTAGTCTCCTCCCCAAAAGCCGCAGAGCTATTCCTCAAAACTCATGACACTAATTTCGCCAGCCGGCCCAAAATCCAAGCCTCGGAGTACATATCCTACGGCACAAAGGGCATGGCCTTTTCCGAATATGGTCCCTATTGGCGCCATGTAAGGAAGCTCTGTACGCTTCAGCTTTTCTGTCCAGCAAAAATAGAGGCTTTCGCGCCGCTGAGAAAGGATGAGCTGGGAGTGCTGCTGAGAAAGCTGCAGAGGAAGGTGGTGTTGTGGATGTTAGTGAGGATATTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCV_T_C

Protein Analysis

107

Amino Acids

12.22

Weight (kDa)

10.08

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 96	5.1e-11	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12130
fragaria_vesca	FvH4_5g00670 FvH4_5g00670 FvH4_5g00670 FvH4_5g00670 FvH4_5g00670
malus_domestica	MD04G1079500.v1.1
prunus_persica	Prupe.5G079500_v2.0.a1 Prupe.5G079500_v2.0.a1
pyrus_communis	pycom04g07160
rosa_chinensis	RchiOBHm_Chr4g0419741 RchiOBHm_Chr7g0201591
rosa_laevigata	RLG00000003663 RLG00000007800
rosa_multiflora	Rmu_sc0014889.1_g000001 Rmu_sc0016868.1_g000005 Rmu_sc0016868.1_g000007
rosa_roxburghii	Rroxscaffold_3G00255220 Rroxscaffold_5G00362570
rosa_rugosa	Rorug04G0160100 Rorug04G0160200 Rorug04G0160300 Rorug07G0064900 Rorug07G0065000
rosa_samantha	Rh4BG223300 Rh4CG234600 Rh4DG220300 Rh7AG191500 Rh7BG193800 Rh7CG202900 Rh7DG196800
rosa_wichuraiana	Rw4G019050 Rw7G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	174
AccII	CGCG	1 cut(s)	236
AciI	CCGC	2 cut(s)	54, 239
AcuI	CTGAAG	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	2 cut(s)	122, 196
AfiI	CCNNNNNNNGG	1 cut(s)	115
AluBI	AGCT	5 cut(s)	61, 190, 205, 256, 277
AluI	AGCT	5 cut(s)	61, 190, 205, 256, 277
Alw26I	GTCTC	1 cut(s)	43
AoxI	GGCC	2 cut(s)	98, 147
ApeKI	GCWGC	2 cut(s)	265, 277
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	2 cut(s)	177, 238
AspS9I	GGNCC	2 cut(s)	99, 164
AvaII	GGWCC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	252, 264
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	278
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	4 cut(s)	54, 239, 266, 278
BlsI	GCNGC	4 cut(s)	55, 240, 267, 279
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	99, 164
BmiI	GGNNCC	2 cut(s)	166, 176
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	3 cut(s)	6, 256, 306
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	233, 260
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	252, 264
BseYI	CCCAGC	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	2 cut(s)	100, 149
BshNI	GGYRCC	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	100, 149
BspACI	CCGC	2 cut(s)	54, 239
BspANI	GGCC	2 cut(s)	100, 149
BspCNI	CTCAG	2 cut(s)	234, 261
BspFNI	CGCG	1 cut(s)	236
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	166, 176
BspMAI	CTGCAG	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	94, 98
BstDEI	CTNAG	2 cut(s)	242, 269
BstF5I	GGATG	3 cut(s)	6, 256, 306
BstFNI	CGCG	1 cut(s)	236
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	177, 238
BstMAI	GTCTC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 196, 262, 274
BstSFI	CTRYAG	1 cut(s)	278
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	252, 264
BsuRI	GGCC	2 cut(s)	100, 149
BtsCI	GGATG	3 cut(s)	6, 256, 306
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	94, 98
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	2 cut(s)	177, 238
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	99, 164
Csp6I	GTAC	2 cut(s)	121, 195
CviAII	CATG	3 cut(s)	77, 145, 179
CviQI	GTAC	2 cut(s)	121, 195
DdeI	CTNAG	2 cut(s)	242, 269
DinI	GGCGCC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	185
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
FaeI	CATG	3 cut(s)	80, 148, 182
FaiI	YATR	6 cut(s)	32, 78, 125, 146, 162, 180
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	3 cut(s)	76, 144, 178
Fnu4HI	GCNGC	4 cut(s)	54, 239, 266, 278
FokI	GGATG	2 cut(s)	263, 313
Fsp4HI	GCNGC	4 cut(s)	54, 239, 266, 278
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	2 cut(s)	176, 237
GluI	GCNGC	4 cut(s)	54, 239, 266, 278
GsaI	CCCAGC	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	100, 149
HapII	CCGG	1 cut(s)	97
HhaI	GCGC	2 cut(s)	177, 238
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	80, 148, 182
Hin6I	GCGC	2 cut(s)	175, 236
HinP1I	GCGC	2 cut(s)	175, 236
HpaII	CCGG	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	27, 118, 157
Hpy188III	TCNNGA	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	280
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 196, 262, 274
HpyF3I	CTNAG	2 cut(s)	242, 269
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	80, 148, 182
HspAI	GCGC	2 cut(s)	175, 236
KasI	GGCGCC	1 cut(s)	174
KroI	GCCGGC	1 cut(s)	96
KroNI	GCCGGC	1 cut(s)	98
LpnPI	CCDG	4 cut(s)	106, 110, 228, 242
Lsp1109I	GCAGC	2 cut(s)	252, 264
MaeI	CTAG	1 cut(s)	14
MluCI	AATT	1 cut(s)	85
Mly113I	GGCGCC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	6 cut(s)	52, 77, 124, 220, 276, 303
MroNI	GCCGGC	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	4 cut(s)	141, 196, 262, 274
NaeI	GCCGGC	1 cut(s)	98
NarI	GGCGCC	1 cut(s)	175
NgoMIV	GCCGGC	1 cut(s)	96
NlaIII	CATG	3 cut(s)	80, 148, 182
NlaIV	GGNNCC	2 cut(s)	166, 176
PagI	TCATGA	1 cut(s)	76
PdiI	GCCGGC	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	55, 240, 267, 279
PluTI	GGCGCC	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	166, 176
PspPI	GGNCC	2 cut(s)	99, 164
PstI	CTGCAG	1 cut(s)	282
RsaI	GTAC	2 cut(s)	122, 196
RsaNI	GTAC	2 cut(s)	121, 195
SatI	GCNGC	4 cut(s)	54, 239, 266, 278
Sau96I	GGNCC	2 cut(s)	99, 164
SetI	ASST	6 cut(s)	63, 192, 207, 258, 279, 291
SfcI	CTRYAG	1 cut(s)	278
SfoI	GGCGCC	1 cut(s)	176
SinI	GGWCC	1 cut(s)	164
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	2 cut(s)	54, 239
SspDI	GGCGCC	1 cut(s)	174
SspMI	CTAG	1 cut(s)	14
TasI	AATT	1 cut(s)	85
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	2 cut(s)	56, 241
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	2 cut(s)	265, 277
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	164
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.