Rh7CG202900

transferase CAF17 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004121
Physical Location & Seq
Forward (+)
18043857 .. 18046689
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG202900.1

Sequence Viewer

Length: 1272 bp
ATGACCACCTCTTCTTCTTCGCCATTGAAGCTTTCTCCCTCTTCCCTCAGTCTCACGCCTTGGAAAATACGCCTGAAACTTCCACTACGGTTTCCCAAATCCATTTCCTATGGTTACAGAGCCTTCCACGATAAGACGCAGCTGGAGAATGTCGGGCCGCTGGCTTCAATCCTCAAGTCCCGGGCAGTGGTTCAATTCCGAGGTCCAGATACAGTTAAGTTCCTTCAGGGGTTGTTGACAAATGACGTAAGGAGGTTTGGTGAAACCTTGAGTGAGAAGACCTCAACATTGGTCACACCCAATTTATCCTCGGAGTCCATACCACCTATGTATGCCGCGCTATTAACACCTCAGGGAAGATTCTTATATGATTTCGTCTTGTATGGCCTGCCTAGGCCGGATGCCAAGCTTAATAGGGCTGGGTCGGGACCTGGGGCAGACCCAGATGAGCCGTTGGAGGTCTTTGCTGATGTAGATGCTTCAGTCTTGGACGAACTCTTGAGCACCTTAAAGAAATACCGTTTGAGGGCTAAGGTTGACATTGAGAATGTGGCAGACGAGTTACATTGCTGGCAGCGTTATGGGGGAAAGCTATCTAAGAAGGACTACTCTGTAGAAGAACCAGAAGCTGCTAGTGTTGGCTGGGGTGCTGGTGTTGATCGCTTAGGCATGTCAACTTCACGTGGAGAGCCTTGTGGATGGCAGTGGTTTAAGGATCCAAGATTGGATTGCCTTGGTTTCAGGGGGATCTTCCCGTCTAATACAACACCACCTTTGGTTGAAGCTGACAAAGAAACAGATGAACAAAACTACCTTCTATGGAGAATAGAAAATGGTGTTGCAGAAGGATCAACCGAGATCTCTAAAGGTGAGGCAATTCCTCTAGAATATAACCTGGTGGCTCTAAATGCAATTAGCTTTGACAAAGGGTGTTATGTGGGCCAAGAGCTTGTTGCTCGAACACACCACAGAGGGGTCATTCGCAAACGCCTGCTTCCTCTAAAATTTCTCAAGGATAGCGGAGAAGAAGCAGAGCAGAAGGTTGCCCCTGGCTCCGAAGTGATTGATAGTGTTTCTGACAAGAAAATTGGTACTGTCACAACTCAACTTGGATGTCGTGGACTTGGTGTCTTGCGTTTGGATGAAGCTTTTAAAGGATCAAGTACGTTAACCATACGAGGCCAGGACGATGTGAAGGTCGAGCCTATTAGACCCGATTGGTGGCCGCCTGAATGGTTGCAAGAACATCAGCGTCGAAGTGCAGCTGCTTAA

Protein Analysis

423

Amino Acids

46.92

Weight (kDa)

6.58

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-barrel_CAF17_C PF25455 328 - 409 3.8e-19 CAF17, C-terminal beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 338
AciI CCGC 4 cut(s) 158, 336, 1020, 1226
AclWI GGATC 5 cut(s) 710, 723, 755, 856, 1165
AcoI YGGCCR 1 cut(s) 1223
AcsI RAATTY 1 cut(s) 1004
AcuI CTGAAG 2 cut(s) 209, 465
AcvI CACGTG 1 cut(s) 683
AfaI GTAC 2 cut(s) 1093, 1165
AfiI CCNNNNNNNGG 4 cut(s) 187, 526, 973, 1221
AgsI TTSAA 4 cut(s) 28, 168, 194, 782
AhdI GACNNNNNGTC 1 cut(s) 1127
AjnI CCWGG 4 cut(s) 430, 894, 1048, 1182
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 5 cut(s) 710, 723, 755, 856, 1165
AlwNI CAGNNNCTG 1 cut(s) 629
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 6 cut(s) 155, 385, 395, 940, 1180, 1223
ApeKI GCWGC 5 cut(s) 139, 574, 629, 1262, 1265
ApoI RAATTY 1 cut(s) 1004
AspA2I CCTAGG 1 cut(s) 392
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 4 cut(s) 155, 203, 428, 940
AsuC2I CCSGG 2 cut(s) 181, 182
AsuHPI GGTGA 2 cut(s) 272, 881
AvaI CYCGRG 1 cut(s) 180
AvaII GGWCC 2 cut(s) 203, 428
AvrII CCTAGG 1 cut(s) 392
AxyI CCTNAGG 1 cut(s) 351
BamHI GGATCC 1 cut(s) 715
BbrPI CACGTG 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 4 cut(s) 151, 586, 616, 1252
BccI CCATC 1 cut(s) 693
BceAI ACGGC 1 cut(s) 436
BciT130I CCWGG 4 cut(s) 432, 896, 1050, 1184
BcnI CCSGG 2 cut(s) 181, 182
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 3 cut(s) 393, 633, 884
BfmI CTRYAG 1 cut(s) 612
BglII AGATCT 1 cut(s) 858
BisI GCNGC 8 cut(s) 140, 158, 336, 575, 630, 1226, 1263, 1266
BlnI CCTAGG 1 cut(s) 392
BlsI GCNGC 8 cut(s) 141, 159, 337, 576, 631, 1227, 1264, 1267
Bme1390I CCNGG 6 cut(s) 181, 182, 432, 896, 1050, 1184
Bme18I GGWCC 2 cut(s) 203, 428
BmeRI GACNNNNNGTC 1 cut(s) 1127
BmeT110I CYCGRG 1 cut(s) 180
BmgT120I GGNCC 4 cut(s) 155, 203, 428, 940
BmiI GGNNCC 3 cut(s) 429, 717, 1054
BmrFI CCNGG 6 cut(s) 181, 182, 432, 896, 1050, 1184
BmsI GCATC 2 cut(s) 391, 466
BpiI GAAGAC 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 266, 298
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 2 cut(s) 531, 664
BpuEI CTTGAG 4 cut(s) 158, 289, 520, 995
BpuMI CCSGG 2 cut(s) 181, 182
BsaAI YACGTR 1 cut(s) 683
BsaJI CCNNGG 8 cut(s) 59, 180, 199, 309, 392, 431, 733, 1048
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bsc4I CCNNNNNNNGG 4 cut(s) 187, 526, 973, 1221
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 565
BseBI CCWGG 4 cut(s) 432, 896, 1050, 1184
BseDI CCNNGG 8 cut(s) 59, 180, 199, 309, 392, 431, 733, 1048
BseGI GGATG 4 cut(s) 406, 704, 1118, 1147
BseLI CCNNNNNNNGG 4 cut(s) 187, 526, 973, 1221
BseMI GCAATG 1 cut(s) 565
BseMII CTCAG 2 cut(s) 61, 365
BseXI GCAGC 4 cut(s) 151, 586, 616, 1252
BseYI CCCAGC 2 cut(s) 419, 642
Bsh1236I CGCG 1 cut(s) 338
BshFI GGCC 6 cut(s) 157, 387, 397, 942, 1182, 1225
BsiHKAI GWGCWC 1 cut(s) 506
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 2 cut(s) 181, 398
BslFI GGGAC 2 cut(s) 163, 441
BslI CCNNNNNNNGG 4 cut(s) 187, 526, 973, 1221
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 2 cut(s) 163, 441
BsnI GGCC 6 cut(s) 157, 387, 397, 942, 1182, 1225
BsoBI CYCGRG 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 6 cut(s) 658, 715, 747, 848, 858, 1157
BspACI CCGC 4 cut(s) 158, 336, 1020, 1226
BspANI GGCC 6 cut(s) 157, 387, 397, 942, 1182, 1225
BspCNI CTCAG 2 cut(s) 60, 364
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 3 cut(s) 429, 717, 1054
BspPI GGATC 5 cut(s) 710, 723, 755, 856, 1165
BsrDI GCAATG 1 cut(s) 565
BssECI CCNNGG 8 cut(s) 59, 180, 199, 309, 392, 431, 733, 1048
BssMI GATC 6 cut(s) 658, 715, 747, 848, 858, 1157
BssT1I CCWWGG 3 cut(s) 59, 392, 733
Bst2UI CCWGG 4 cut(s) 432, 896, 1050, 1184
Bst4CI ACNGT 4 cut(s) 90, 214, 521, 1096
Bst6I CTCTTC 2 cut(s) 16, 46
BstBAI YACGTR 1 cut(s) 683
BstC8I GCNNGC 4 cut(s) 162, 389, 572, 992
BstDEI CTNAG 5 cut(s) 47, 351, 531, 597, 664
BstF5I GGATG 4 cut(s) 406, 704, 1118, 1147
BstFNI CGCG 1 cut(s) 338
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 6 cut(s) 661, 718, 750, 851, 861, 1160
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 6 cut(s) 658, 715, 747, 848, 858, 1157
BstMWI GCNNNNNNNGC 2 cut(s) 28, 908
BstNI CCWGG 4 cut(s) 432, 896, 1050, 1184
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 6 cut(s) 179, 180, 430, 894, 1048, 1182
BstSFI CTRYAG 1 cut(s) 612
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 4 cut(s) 151, 586, 616, 1252
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 3 cut(s) 715, 747, 858
BstYI RGATCY 3 cut(s) 715, 747, 858
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 6 cut(s) 157, 387, 397, 942, 1182, 1225
BtsCI GGATG 4 cut(s) 406, 704, 1118, 1147
BtsI GCAGTG 2 cut(s) 192, 710
BtsIMutI CAGTG 2 cut(s) 192, 710
Cac8I GCNNGC 4 cut(s) 162, 389, 572, 992
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 4 cut(s) 155, 203, 428, 940
Cfr9I CCCGGG 1 cut(s) 180
CseI GACGC 2 cut(s) 145, 1241
CsiI ACCWGGT 1 cut(s) 894
Csp6I GTAC 2 cut(s) 1092, 1164
CviAII CATG 1 cut(s) 670
CviQI GTAC 2 cut(s) 1092, 1164
DdeI CTNAG 5 cut(s) 47, 351, 531, 597, 664
DpnI GATC 6 cut(s) 660, 717, 749, 850, 860, 1159
DpnII GATC 6 cut(s) 658, 715, 747, 848, 858, 1157
DraI TTTAAA 1 cut(s) 1153
DriI GACNNNNNGTC 1 cut(s) 1127
EaeI YGGCCR 1 cut(s) 1223
Eam1104I CTCTTC 2 cut(s) 16, 46
Eam1105I GACNNNNNGTC 1 cut(s) 1127
EarI CTCTTC 2 cut(s) 16, 46
Eco130I CCWWGG 3 cut(s) 59, 392, 733
Eco47I GGWCC 2 cut(s) 203, 428
Eco57I CTGAAG 2 cut(s) 209, 465
Eco72I CACGTG 1 cut(s) 683
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 4 cut(s) 430, 894, 1048, 1182
EcoT14I CCWWGG 3 cut(s) 59, 392, 733
ErhI CCWWGG 3 cut(s) 59, 392, 733
FaeI CATG 1 cut(s) 673
FaqI GGGAC 2 cut(s) 163, 441
FatI CATG 1 cut(s) 669
Fnu4HI GCNGC 8 cut(s) 140, 158, 336, 575, 630, 1226, 1263, 1266
FokI GGATG 4 cut(s) 413, 711, 1125, 1154
Fsp4HI GCNGC 8 cut(s) 140, 158, 336, 575, 630, 1226, 1263, 1266
FspBI CTAG 3 cut(s) 393, 633, 884
GlaI GCGC 1 cut(s) 339
GluI GCNGC 8 cut(s) 140, 158, 336, 575, 630, 1226, 1263, 1266
GsaI CCCAGC 2 cut(s) 423, 646
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 6 cut(s) 157, 387, 397, 942, 1182, 1225
HapII CCGG 2 cut(s) 181, 398
HgaI GACGC 2 cut(s) 145, 1241
HhaI GCGC 1 cut(s) 340
Hin1II CATG 1 cut(s) 673
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HincII GTYRAC 4 cut(s) 237, 538, 675, 1170
HindII GTYRAC 4 cut(s) 237, 538, 675, 1170
HindIII AAGCTT 3 cut(s) 29, 407, 1146
HinfI GANTC 2 cut(s) 314, 360
HpaI GTTAAC 1 cut(s) 1170
HpaII CCGG 2 cut(s) 181, 398
HphI GGTGA 2 cut(s) 272, 881
Hpy166II GTNNAC 5 cut(s) 237, 538, 675, 1121, 1170
Hpy188I TCNGA 4 cut(s) 200, 313, 1057, 1078
Hpy188III TCNNGA 4 cut(s) 206, 426, 499, 884
Hpy8I GTNNAC 5 cut(s) 237, 538, 675, 1121, 1170
Hpy99I CGWCG 1 cut(s) 1257
HpyAV CCTTC 7 cut(s) 133, 233, 595, 824, 839, 1033, 1189
HpyCH4III ACNGT 4 cut(s) 90, 214, 521, 1096
HpyCH4IV ACGT 3 cut(s) 246, 682, 1166
HpyCH4V TGCA 4 cut(s) 842, 911, 1240, 1262
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 908
HpyF3I CTNAG 5 cut(s) 47, 351, 531, 597, 664
HpySE526I ACGT 3 cut(s) 246, 682, 1166
Hsp92II CATG 1 cut(s) 673
HspAI GCGC 1 cut(s) 338
KspAI GTTAAC 1 cut(s) 1170
Kzo9I GATC 6 cut(s) 658, 715, 747, 848, 858, 1157
LmnI GCTCC 1 cut(s) 1058
Lsp1109I GCAGC 4 cut(s) 151, 586, 616, 1252
LweI GCATC 2 cut(s) 391, 466
MabI ACCWGGT 1 cut(s) 894
MaeI CTAG 3 cut(s) 393, 633, 884
MaeII ACGT 3 cut(s) 246, 682, 1166
MaeIII GTNAC 4 cut(s) 113, 292, 561, 1096
MalI GATC 6 cut(s) 660, 717, 749, 850, 860, 1159
MboI GATC 6 cut(s) 658, 715, 747, 848, 858, 1157
MboII GAAGA 9 cut(s) 3, 6, 9, 33, 289, 369, 629, 742, 1037
MflI RGATCY 3 cut(s) 715, 747, 858
MhlI GDGCHC 1 cut(s) 506
MluCI AATT 6 cut(s) 194, 301, 876, 912, 1004, 1086
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 435
MseI TTAA 8 cut(s) 216, 344, 411, 509, 711, 1152, 1169, 1270
MspA1I CMGCKG 3 cut(s) 142, 160, 1265
MspI CCGG 2 cut(s) 181, 398
MspR9I CCNGG 6 cut(s) 181, 182, 432, 896, 1050, 1184
MvaI CCWGG 4 cut(s) 432, 896, 1050, 1184
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 2 cut(s) 28, 908
NciI CCSGG 2 cut(s) 181, 182
NdeII GATC 6 cut(s) 658, 715, 747, 848, 858, 1157
NlaIII CATG 1 cut(s) 673
NlaIV GGNNCC 3 cut(s) 429, 717, 1054
NmuCI GTSAC 2 cut(s) 292, 1096
NspI RCATGY 1 cut(s) 673
PfeI GAWTC 1 cut(s) 360
PkrI GCNGC 8 cut(s) 141, 159, 337, 576, 631, 1227, 1264, 1267
PleI GAGTC 1 cut(s) 322
PmaCI CACGTG 1 cut(s) 683
PmlI CACGTG 1 cut(s) 683
PpsI GAGTC 1 cut(s) 322
Ppu21I YACGTR 1 cut(s) 683
PpuMI RGGWCCY 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 4 cut(s) 430, 894, 1048, 1182
PspCI CACGTG 1 cut(s) 683
PspFI CCCAGC 2 cut(s) 419, 642
PspGI CCWGG 4 cut(s) 430, 894, 1048, 1182
PspN4I GGNNCC 3 cut(s) 429, 717, 1054
PspPI GGNCC 4 cut(s) 155, 203, 428, 940
PspPPI RGGWCCY 1 cut(s) 428
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 3 cut(s) 715, 747, 858
PvuII CAGCTG 2 cut(s) 142, 1265
RsaI GTAC 2 cut(s) 1093, 1165
RsaNI GTAC 2 cut(s) 1092, 1164
SaqAI TTAA 8 cut(s) 216, 344, 411, 509, 711, 1152, 1169, 1270
SatI GCNGC 8 cut(s) 140, 158, 336, 575, 630, 1226, 1263, 1266
Sau3AI GATC 6 cut(s) 658, 715, 747, 848, 858, 1157
Sau96I GGNCC 4 cut(s) 155, 203, 428, 940
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 6 cut(s) 181, 182, 432, 896, 1050, 1184
SduI GDGCHC 1 cut(s) 506
SexAI ACCWGGT 1 cut(s) 894
SfaNI GCATC 2 cut(s) 391, 466
SfcI CTRYAG 1 cut(s) 612
SinI GGWCC 2 cut(s) 203, 428
SmaI CCCGGG 1 cut(s) 182
SmlI CTYRAG 4 cut(s) 173, 268, 499, 1010
SmoI CTYRAG 4 cut(s) 173, 268, 499, 1010
Sse9I AATT 6 cut(s) 194, 301, 876, 912, 1004, 1086
SsiI CCGC 4 cut(s) 158, 336, 1020, 1226
SspMI CTAG 3 cut(s) 393, 633, 884
StyD4I CCNGG 6 cut(s) 179, 180, 430, 894, 1048, 1182
StyI CCWWGG 3 cut(s) 59, 392, 733
TaaI ACNGT 4 cut(s) 90, 214, 521, 1096
TaiI ACGT 3 cut(s) 249, 685, 1169
TaqI TCGA 3 cut(s) 958, 1200, 1255
TasI AATT 6 cut(s) 194, 301, 876, 912, 1004, 1086
TauI GCSGC 3 cut(s) 160, 338, 1228
TfiI GAWTC 1 cut(s) 360
Tru1I TTAA 8 cut(s) 216, 344, 411, 509, 711, 1152, 1169, 1270
Tru9I TTAA 8 cut(s) 216, 344, 411, 509, 711, 1152, 1169, 1270
TscAI CASTG 2 cut(s) 192, 710
TseFI GTSAC 2 cut(s) 292, 1096
TseI GCWGC 5 cut(s) 139, 574, 629, 1262, 1265
Tsp45I GTSAC 2 cut(s) 292, 1096
TspDTI ATGAA 2 cut(s) 816, 1158
TspMI CCCGGG 1 cut(s) 180
TspRI CASTG 2 cut(s) 192, 710
VpaK11BI GGWCC 2 cut(s) 203, 428
XapI RAATTY 1 cut(s) 1004
XbaI TCTAGA 1 cut(s) 883
XceI RCATGY 1 cut(s) 673
XmaI CCCGGG 1 cut(s) 180
XmaJI CCTAGG 1 cut(s) 392
XspI CTAG 3 cut(s) 393, 633, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.