Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004121

Physical Location & Seq

Genomic Coordinates Forward (+)

27888872 .. 27891909

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0160200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGACAGGTGATACAAATTCCTGGGCCAGAAAAAAACAACAAGTTTCAGGTGCTCCTGGGGTGAAGAAAGTTCCTTGGTTAAAGAAACTGCTTAACAAAAGTGGCTCGTCAAGGAAACTGTTTAACAAAAGTGGGTCTAATCCGGCTGAGAATGAAACTGACCAGTTGGGCTCAACTGAAGGGAGAGCATATAACAATGAGGTTCGAATCGGAATCAAGGAACCAGAGGTGATGCCTCACAGGAATGCTGTTCGAGAAGATGGGGGTTGTATTGATCAGAAGGTTAATAATGGTGCACCTGTTCAGGATATGGTTATTTTTAGTGGCGGTGTTCATCATCAGAGGCAGCAGCAAATTGAAAATAGTGGGGCAGATCATGTTGTTATCCATATTGAAGAAGGTGAGGTAGGTTGGGTTATAGTACCTAACATAATCCCAAGGCCGAATCTTGGAGCTGGGAACTTGGAACGCGCTTATTCATTGCTTTCTGTAGGAGGGATCATAACTCCATTTCACAATTTTATGAACTTCTGGCAGGGCAACGGTCAAGGATTGAGGCAGCAGCTCTACAATCTTATTCTGAGGCAGCAGCAGAATTATAATATTGGTGCACAGGGTGATAATGATTTTCACCATCAACTAGTTCTGGACATTAAAGAAGCAGAAGGAGGAGTGGTAGGTGGGGGTAGGAGGATACCAAGGATCAGAGTGGCAGGTGGTGCTAGGAGGATACCGAGAATGATCCTTGTGAGGTTGAGCGGTGGAGATGTGCCTGTCCATTCCACTTACGCATGGCTTTGTGAGAAAGGGCAATCAATTCCATTCAATGCTAGTGTGCATTCAGTGTATGGGTATGGTCAACATTCAATCTGGTTTGAGGAGGGAGGGCTTCCTCCGGCTGTTGAACCTTTTGCACCAGATACTGCAGACTTCCTCACCAAATCAAGTCCTTATTTCTGCCAGGGATTGATATCGCTGGTCGTATTTTTCCTTGTTAGCTCACTACCGTGCTTTTTCTTGAAGGGCTCAGGAGAAATAATTGGACCTAAAAATGATTCCAACGCCGACCCATTTTATTTCAGCATGGTCATAATGTCTTCCACAGGATACGGCGATATGTATCCCAAATCTACCCGTGCCAGACTGTTGACTTGCTTTTGGATACTTTTTGGTGTTGGAATTGTCGCTGGGCGATTAAGTGCCGTGTTTAACTGCTTAGCCAATGCCTTTGGCAACCTTTTTTTTGGATACATGAGTCGTCGATCTTCAGGTCAACTAATAACTGAAAGGTCCAGGGCAAAATACAAAGTTTGGTTCGCTGTGTTAGTAGTCACCCTATGCATCGTTGTAGGTCTCTTTGGCTGCAAGTATTTGGAAGGAATGGACTGGCTGGAGTCCTTTTACTTGTCAGTGGTTACAGTCTCATCAGTTGGTTTTGGAGATCTGCACTTTAATTCTTTTGCTGGAAAGGTTTTTGCGACTTTCTGGATACCAGTAAGCACCATTCTAGTTGGAATTTCATTTGGTTATATTTCAAATTGTGGATATGGAAGCTTAAGATGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCV_T_C

Protein Analysis

522

Amino Acids

57.48

Weight (kDa)

9.0

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans_2	PF07885	328 - 406	1.8e-12	Ion channel
Ion_trans_2	PF07885	440 - 513	2.9e-11	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12130
fragaria_vesca	FvH4_5g00670 FvH4_5g00670 FvH4_5g00670 FvH4_5g00670 FvH4_5g00670
malus_domestica	MD04G1079500.v1.1
prunus_persica	Prupe.5G079500_v2.0.a1 Prupe.5G079500_v2.0.a1
pyrus_communis	pycom04g07160
rosa_chinensis	RchiOBHm_Chr4g0419741 RchiOBHm_Chr7g0201591
rosa_laevigata	RLG00000003663 RLG00000007800
rosa_multiflora	Rmu_sc0014889.1_g000001 Rmu_sc0016868.1_g000005 Rmu_sc0016868.1_g000007
rosa_roxburghii	Rroxscaffold_3G00255220 Rroxscaffold_5G00362570
rosa_rugosa	Rorug04G0160100 Rorug04G0160200 Rorug04G0160300 Rorug07G0064900 Rorug07G0065000
rosa_samantha	Rh4BG223300 Rh4CG234600 Rh4DG220300 Rh7AG191500 Rh7BG193800 Rh7CG202900 Rh7DG196800
rosa_wichuraiana	Rw4G019050 Rw7G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AarI	CACCTGC	1 cut(s)	704
Acc36I	ACCTGC	1 cut(s)	704
AccBSI	CCGCTC	1 cut(s)	759
AccII	CGCG	1 cut(s)	471
AciI	CCGC	2 cut(s)	327, 759
AclWI	GGATC	3 cut(s)	506, 710, 736
AcsI	RAATTY	2 cut(s)	16, 1515
AcuI	CTGAAG	2 cut(s)	198, 1251
AdeI	CACNNNGTG	1 cut(s)	617
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	1 cut(s)	449
AflII	CTTAAG	1 cut(s)	1555
AgsI	TTSAA	7 cut(s)	359, 395, 826, 867, 905, 1021, 1536
AhlI	ACTAGT	1 cut(s)	640
AjnI	CCWGG	4 cut(s)	20, 55, 960, 1292
AleI	CACNNNNGTG	1 cut(s)	1006
AluBI	AGCT	4 cut(s)	455, 565, 999, 1554
AluI	AGCT	4 cut(s)	455, 565, 999, 1554
Alw21I	GWGCWC	3 cut(s)	55, 298, 613
Alw26I	GTCTC	2 cut(s)	1358, 1426
Alw44I	GTGCAC	2 cut(s)	294, 609
AlwI	GGATC	3 cut(s)	506, 710, 736
AlwNI	CAGNNNCTG	1 cut(s)	923
AoxI	GGCC	2 cut(s)	24, 440
ApaLI	GTGCAC	2 cut(s)	294, 609
ApeKI	GCWGC	7 cut(s)	346, 349, 559, 562, 586, 589, 1362
ApoI	RAATTY	2 cut(s)	16, 1515
AspLEI	GCGC	1 cut(s)	473
AspS9I	GGNCC	3 cut(s)	24, 1043, 1290
AsuHPI	GGTGA	8 cut(s)	20, 73, 241, 413, 623, 629, 928, 1324
AsuII	TTCGAA	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	1043, 1290
BaeGI	GKGCMC	2 cut(s)	298, 613
BaeI	ACNNNNGTAYC	2 cut(s)	1240, 1273
BanII	GRGCYC	2 cut(s)	173, 1028
BbsI	GAAGAC	1 cut(s)	1089
Bbv12I	GWGCWC	3 cut(s)	55, 298, 613
BbvI	GCAGC	7 cut(s)	358, 361, 571, 574, 598, 601, 1349
BccI	CCATC	3 cut(s)	254, 642, 1554
BceAI	ACGGC	2 cut(s)	1126, 1187
BciT130I	CCWGG	4 cut(s)	22, 57, 962, 1294
BciVI	GTATCC	7 cut(s)	687, 723, 1100, 1131, 1155, 1241, 1482
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	1358, 1426
BcuI	ACTAGT	1 cut(s)	640
BfaI	CTAG	4 cut(s)	641, 723, 831, 1508
BfmI	CTRYAG	2 cut(s)	489, 924
BfrI	CTTAAG	1 cut(s)	1555
BfuAI	ACCTGC	1 cut(s)	704
BfuI	GTATCC	7 cut(s)	687, 723, 1100, 1131, 1155, 1241, 1482
BglII	AGATCT	1 cut(s)	1441
BisI	GCNGC	7 cut(s)	347, 350, 560, 563, 587, 590, 1363
BlpI	GCTNAGC	1 cut(s)	1216
BlsI	GCNGC	7 cut(s)	348, 351, 561, 564, 588, 591, 1364
Bme1390I	CCNGG	4 cut(s)	22, 57, 962, 1294
Bme18I	GGWCC	2 cut(s)	1043, 1290
BmgT120I	GGNCC	3 cut(s)	24, 1043, 1290
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	4 cut(s)	22, 57, 962, 1294
BmsI	GCATC	2 cut(s)	222, 1350
BpiI	GAAGAC	1 cut(s)	1089
BpmI	CTGGAG	1 cut(s)	1412
Bpu10I	CCTNAGC	1 cut(s)	1027
Bpu1102I	GCTNAGC	1 cut(s)	1216
Bpu14I	TTCGAA	1 cut(s)	205
BsaBI	GATNNNNATC	2 cut(s)	970, 1119
BsaI	GGTCTC	1 cut(s)	1358
BsaJI	CCNNGG	7 cut(s)	21, 56, 74, 437, 698, 961, 1293
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	3 cut(s)	163, 1391, 1493
Bse3DI	GCAATG	1 cut(s)	479
Bse8I	GATNNNNATC	2 cut(s)	970, 1119
BseBI	CCWGG	4 cut(s)	22, 57, 962, 1294
BseDI	CCNNGG	7 cut(s)	21, 56, 74, 437, 698, 961, 1293
BseJI	GATNNNNATC	2 cut(s)	970, 1119
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	479
BseMII	CTCAG	3 cut(s)	138, 572, 1041
BseNI	ACTGG	3 cut(s)	163, 1391, 1493
BseRI	GAGGAG	2 cut(s)	684, 893
BseSI	GKGCMC	2 cut(s)	298, 613
BseXI	GCAGC	7 cut(s)	358, 361, 571, 574, 598, 601, 1349
BseYI	CCCAGC	2 cut(s)	455, 1187
BsgI	GTGCAG	1 cut(s)	1430
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	2 cut(s)	26, 442
BsiHKAI	GWGCWC	3 cut(s)	55, 298, 613
BsiSI	CCGG	2 cut(s)	143, 896
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	2 cut(s)	1358, 1426
BsmI	GAATGC	2 cut(s)	250, 838
BsnI	GGCC	2 cut(s)	26, 442
Bso31I	GGTCTC	1 cut(s)	1358
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	5 cut(s)	55, 173, 298, 613, 1028
Bsp143I	GATC	7 cut(s)	274, 373, 498, 702, 741, 1262, 1441
Bsp1720I	GCTNAGC	1 cut(s)	1216
BspACI	CCGC	2 cut(s)	327, 759
BspANI	GGCC	2 cut(s)	26, 442
BspCNI	CTCAG	3 cut(s)	139, 573, 1040
BspFNI	CGCG	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	928
BspMI	ACCTGC	1 cut(s)	704
BspPI	GGATC	3 cut(s)	506, 710, 736
BspT104I	TTCGAA	1 cut(s)	205
BspTI	CTTAAG	1 cut(s)	1555
BspTNI	GGTCTC	1 cut(s)	1358
BsrBI	CCGCTC	1 cut(s)	759
BsrDI	GCAATG	1 cut(s)	479
BsrI	ACTGG	3 cut(s)	163, 1391, 1493
BssECI	CCNNGG	7 cut(s)	21, 56, 74, 437, 698, 961, 1293
BssMI	GATC	7 cut(s)	274, 373, 498, 702, 741, 1262, 1441
BssT1I	CCWWGG	3 cut(s)	74, 437, 698
Bst2UI	CCWGG	4 cut(s)	22, 57, 962, 1294
Bst4CI	ACNGT	5 cut(s)	120, 545, 1008, 1146, 1420
BstAFI	CTTAAG	1 cut(s)	1555
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstBI	TTCGAA	1 cut(s)	205
BstDEI	CTNAG	4 cut(s)	147, 581, 1027, 1216
BstFNI	CGCG	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	7 cut(s)	277, 376, 501, 705, 744, 1265, 1444
BstMAI	GTCTC	2 cut(s)	1358, 1426
BstMBI	GATC	7 cut(s)	274, 373, 498, 702, 741, 1262, 1441
BstMWI	GCNNNNNNNGC	1 cut(s)	719
BstNI	CCWGG	4 cut(s)	22, 57, 962, 1294
BstSCI	CCNGG	4 cut(s)	20, 55, 960, 1292
BstSFI	CTRYAG	2 cut(s)	489, 924
BstSLI	GKGCMC	2 cut(s)	298, 613
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	7 cut(s)	358, 361, 571, 574, 598, 601, 1349
BstV2I	GAAGAC	1 cut(s)	1089
BstX2I	RGATCY	1 cut(s)	1441
BstYI	RGATCY	1 cut(s)	1441
BsuI	GTATCC	7 cut(s)	687, 723, 1100, 1131, 1155, 1241, 1482
BsuRI	GGCC	2 cut(s)	26, 442
BtsIMutI	CAGTG	2 cut(s)	849, 1416
BveI	ACCTGC	1 cut(s)	704
CaiI	CAGNNNCTG	1 cut(s)	923
CfoI	GCGC	1 cut(s)	473
Cfr13I	GGNCC	3 cut(s)	24, 1043, 1290
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	4 cut(s)	377, 792, 1084, 1252
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	4 cut(s)	147, 581, 1027, 1216
DpnI	GATC	7 cut(s)	276, 375, 500, 704, 743, 1264, 1443
DpnII	GATC	7 cut(s)	274, 373, 498, 702, 741, 1262, 1441
DraIII	CACNNNGTG	1 cut(s)	617
Eco130I	CCWWGG	3 cut(s)	74, 437, 698
Eco24I	GRGCYC	2 cut(s)	173, 1028
Eco31I	GGTCTC	1 cut(s)	1358
Eco32I	GATATC	1 cut(s)	972
Eco47I	GGWCC	2 cut(s)	1043, 1290
Eco57I	CTGAAG	2 cut(s)	198, 1251
EcoRII	CCWGG	4 cut(s)	20, 55, 960, 1292
EcoRV	GATATC	1 cut(s)	972
EcoT14I	CCWWGG	3 cut(s)	74, 437, 698
EcoT22I	ATGCAT	1 cut(s)	1343
EcoT38I	GRGCYC	2 cut(s)	173, 1028
ErhI	CCWWGG	3 cut(s)	74, 437, 698
FaeI	CATG	4 cut(s)	380, 795, 1087, 1255
FatI	CATG	4 cut(s)	376, 791, 1083, 1251
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	7 cut(s)	347, 350, 560, 563, 587, 590, 1363
FriOI	GRGCYC	2 cut(s)	173, 1028
Fsp4HI	GCNGC	7 cut(s)	347, 350, 560, 563, 587, 590, 1363
FspBI	CTAG	4 cut(s)	641, 723, 831, 1508
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	7 cut(s)	347, 350, 560, 563, 587, 590, 1363
GsaI	CCCAGC	2 cut(s)	459, 1191
GsuI	CTGGAG	1 cut(s)	1412
HaeIII	GGCC	2 cut(s)	26, 442
HapII	CCGG	2 cut(s)	143, 896
HhaI	GCGC	1 cut(s)	473
Hin1II	CATG	4 cut(s)	380, 795, 1087, 1255
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HincII	GTYRAC	3 cut(s)	860, 1149, 1274
HindII	GTYRAC	3 cut(s)	860, 1149, 1274
HindIII	AAGCTT	1 cut(s)	1552
HinfI	GANTC	6 cut(s)	207, 213, 445, 1055, 1255, 1394
HpaII	CCGG	2 cut(s)	143, 896
HphI	GGTGA	8 cut(s)	20, 73, 241, 413, 623, 629, 928, 1324
Hpy166II	GTNNAC	5 cut(s)	296, 611, 860, 1149, 1274
Hpy188I	TCNGA	5 cut(s)	212, 279, 342, 582, 707
Hpy188III	TCNNGA	6 cut(s)	254, 305, 647, 1018, 1029, 1486
Hpy8I	GTNNAC	5 cut(s)	296, 611, 860, 1149, 1274
Hpy99I	CGWCG	1 cut(s)	1263
HpyAV	CCTTC	6 cut(s)	173, 274, 392, 659, 1015, 1370
HpyCH4III	ACNGT	5 cut(s)	120, 545, 1008, 1146, 1420
HpyCH4V	TGCA	8 cut(s)	296, 611, 838, 914, 926, 1341, 1365, 1447
HpyF10VI	GCNNNNNNNGC	1 cut(s)	719
HpyF3I	CTNAG	4 cut(s)	147, 581, 1027, 1216
Hsp92II	CATG	4 cut(s)	380, 795, 1087, 1255
HspAI	GCGC	1 cut(s)	471
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	7 cut(s)	274, 373, 498, 702, 741, 1262, 1441
LmnI	GCTCC	2 cut(s)	58, 452
Lsp1109I	GCAGC	7 cut(s)	358, 361, 571, 574, 598, 601, 1349
LweI	GCATC	2 cut(s)	222, 1350
MaeI	CTAG	4 cut(s)	641, 723, 831, 1508
MaeIII	GTNAC	2 cut(s)	1330, 1414
MalI	GATC	7 cut(s)	276, 375, 500, 704, 743, 1264, 1443
MbiI	CCGCTC	1 cut(s)	759
MboI	GATC	7 cut(s)	274, 373, 498, 702, 741, 1262, 1441
MboII	GAAGA	5 cut(s)	76, 269, 407, 1089, 1257
MflI	RGATCY	1 cut(s)	1441
MhlI	GDGCHC	5 cut(s)	55, 173, 298, 613, 1028
MlyI	GAGTC	2 cut(s)	1264, 1403
MmeI	TCCRAC	3 cut(s)	1083, 1156, 1492
Mph1103I	ATGCAT	1 cut(s)	1343
MseI	TTAA	9 cut(s)	80, 93, 123, 285, 654, 1196, 1209, 1452, 1556
MslI	CAYNNNNRTG	2 cut(s)	243, 1006
MspCI	CTTAAG	1 cut(s)	1555
MspI	CCGG	2 cut(s)	143, 896
MspR9I	CCNGG	4 cut(s)	22, 57, 962, 1294
Mva1269I	GAATGC	2 cut(s)	250, 838
MvaI	CCWGG	4 cut(s)	22, 57, 962, 1294
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	1 cut(s)	719
NdeII	GATC	7 cut(s)	274, 373, 498, 702, 741, 1262, 1441
NlaIII	CATG	4 cut(s)	380, 795, 1087, 1255
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	1330
NsiI	ATGCAT	1 cut(s)	1343
NspV	TTCGAA	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	1006
PaqCI	CACCTGC	1 cut(s)	704
PctI	GAATGC	2 cut(s)	250, 838
PfeI	GAWTC	4 cut(s)	207, 213, 445, 1055
PkrI	GCNGC	7 cut(s)	348, 351, 561, 564, 588, 591, 1364
PleI	GAGTC	2 cut(s)	1263, 1402
PpsI	GAGTC	2 cut(s)	1263, 1402
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	4 cut(s)	20, 55, 960, 1292
PspFI	CCCAGC	2 cut(s)	455, 1187
PspGI	CCWGG	4 cut(s)	20, 55, 960, 1292
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	3 cut(s)	24, 1043, 1290
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	1 cut(s)	1441
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	2 cut(s)	243, 1006
SaqAI	TTAA	9 cut(s)	80, 93, 123, 285, 654, 1196, 1209, 1452, 1556
SatI	GCNGC	7 cut(s)	347, 350, 560, 563, 587, 590, 1363
Sau3AI	GATC	7 cut(s)	274, 373, 498, 702, 741, 1262, 1441
Sau96I	GGNCC	3 cut(s)	24, 1043, 1290
SchI	GAGTC	2 cut(s)	1264, 1403
ScrFI	CCNGG	4 cut(s)	22, 57, 962, 1294
SduI	GDGCHC	5 cut(s)	55, 173, 298, 613, 1028
SfaNI	GCATC	2 cut(s)	222, 1350
SfcI	CTRYAG	2 cut(s)	489, 924
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	2 cut(s)	1043, 1290
SmiMI	CAYNNNNRTG	2 cut(s)	243, 1006
SmlI	CTYRAG	1 cut(s)	1555
SmoI	CTYRAG	1 cut(s)	1555
SpeI	ACTAGT	1 cut(s)	640
SsiI	CCGC	2 cut(s)	327, 759
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	4 cut(s)	641, 723, 831, 1508
StyD4I	CCNGG	4 cut(s)	20, 55, 960, 1292
StyI	CCWWGG	3 cut(s)	74, 437, 698
TaaI	ACNGT	5 cut(s)	120, 545, 1008, 1146, 1420
TaqI	TCGA	3 cut(s)	205, 253, 1261
TfiI	GAWTC	4 cut(s)	207, 213, 445, 1055
Tru1I	TTAA	9 cut(s)	80, 93, 123, 285, 654, 1196, 1209, 1452, 1556
Tru9I	TTAA	9 cut(s)	80, 93, 123, 285, 654, 1196, 1209, 1452, 1556
TscAI	CASTG	2 cut(s)	849, 1416
TseFI	GTSAC	1 cut(s)	1330
TseI	GCWGC	7 cut(s)	346, 349, 559, 562, 586, 589, 1362
Tsp45I	GTSAC	1 cut(s)	1330
TspDTI	ATGAA	5 cut(s)	168, 323, 468, 539, 1509
TspRI	CASTG	2 cut(s)	849, 1416
Vha464I	CTTAAG	1 cut(s)	1555
VneI	GTGCAC	2 cut(s)	294, 609
VpaK11BI	GGWCC	2 cut(s)	1043, 1290
XapI	RAATTY	2 cut(s)	16, 1515
XspI	CTAG	4 cut(s)	641, 723, 831, 1508
Zsp2I	ATGCAT	1 cut(s)	1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.