Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004121

Physical Location & Seq

Genomic Coordinates Reverse (-)

51418792 .. 51420881

Gene Structure 2090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003663

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCAGCGTCTGAAACTTCCACTACGGTTTCCCAAATCCATTTCCTATGGTTACAGAGCCTTCCACGATAAGACGCAGCTGGAGAATGTCGGGCCGCTGGCTTCAATCCTCAAGTCCCGGGCAGTGGTTCGGTTCCGTGGTCCAGATACAGTTAAGTTCCTTCAGGGGCTGTTGACGAATGATGTAAGGAGGTTTGGTGAACCCGTGAGTGAGAAGACCTCAACATTGGTCACACCCAATTTATCCTTGGAGTCCATACCACCTATGTATGCCGCACTATTAACACCTCAGGGAAGATTCTTATATGATTTCGTCTTGTATGGCCTGCCTAGGCCGGATGCCAAGCTTAATAGGGCTGGGTCAGGACCTGGGGCAGACCCAGATGAGCCGTTGGAGGTCTTTGCTGATGTAGATGCTTCAGTCTTGGATGAACTCTTAAGCACCTTAAAGAAATACCGTTTGAGGGCTAAGGTTGACATTGAGAATGTGGCAGACGAGTTACATTGCTGGCAGCGTTATGGGGGAAAGCTATCTAAGAAGGACTCCTCTGTAGAAGAACCAGAAGCTGCTAGTGTTGGCTGGGGTGCTGGTGTTGATCGCTTAGGCACGTCAACTTCACGTGGAGAGCCTTGTGGATGGCAGTGGTTTAAGGATCCGAGATTGGATTGCCTTGGTTTCAGGGGGATCTTCCCGTCTAATACAACACCACCTTTGGTTGAAGCTGACAAAGAAACAGATGAACAAAACTACCTTCTATGGAGAATAGAAAATGGTGTTGCAGAAGGATCCACCGAGATCCCTAAAGGTGAGGCAATTCCTCTAGAATATAACCTGGTGGCTCTAAATGCAATTAGCTTTGACAAAGGGTGTTATGTGGGCCAAGAGCTTGTTGCTCGAACACACCACAGAGGGGTCATTCGCAAACGCCTGCTTCCTCTAAAATTTCTCAAGGATAGCGGAGAAGAAGCAGAGCAGAAGGTTGCCCCTGGCTCCGAAGTGATTGATAGTGTTTCTGACAAGAAAATTGGTACTGTCACAACTCAACTTGGATGTCGTGGACTTGGTGTCTTGCGTTTGGATGAAGCTTTTAAAGGATCAAATACGTTAACCATACGAGGCCAGGACGATGTGAAGGTCGAGCCTATTAGACCCGATTGGTGGCCACCTGAATGGTTGCAAGAACATCAGCGTCGAAGTGCAGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCV_T_C

Protein Analysis

403

Amino Acids

44.71

Weight (kDa)

6.3

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-barrel_CAF17_C	PF25455	307 - 388	3.4e-19	CAF17, C-terminal beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12130
fragaria_vesca	FvH4_5g00670 FvH4_5g00670 FvH4_5g00670 FvH4_5g00670 FvH4_5g00670
malus_domestica	MD04G1079500.v1.1
prunus_persica	Prupe.5G079500_v2.0.a1 Prupe.5G079500_v2.0.a1
pyrus_communis	pycom04g07160
rosa_chinensis	RchiOBHm_Chr4g0419741 RchiOBHm_Chr7g0201591
rosa_laevigata	RLG00000003663 RLG00000007800
rosa_multiflora	Rmu_sc0014889.1_g000001 Rmu_sc0016868.1_g000005 Rmu_sc0016868.1_g000007
rosa_roxburghii	Rroxscaffold_3G00255220 Rroxscaffold_5G00362570
rosa_rugosa	Rorug04G0160100 Rorug04G0160200 Rorug04G0160300 Rorug07G0064900 Rorug07G0065000
rosa_samantha	Rh4BG223300 Rh4CG234600 Rh4DG220300 Rh7AG191500 Rh7BG193800 Rh7CG202900 Rh7DG196800
rosa_wichuraiana	Rw4G019050 Rw7G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	95, 273, 957
AclWI	GGATC	7 cut(s)	647, 660, 692, 780, 790, 793, 1102
AcoI	YGGCCR	1 cut(s)	1160
AcsI	RAATTY	1 cut(s)	941
AcuI	CTGAAG	2 cut(s)	146, 402
AcvI	CACGTG	1 cut(s)	620
AfaI	GTAC	1 cut(s)	1030
AfiI	CCNNNNNNNGG	4 cut(s)	124, 463, 910, 1158
AflII	CTTAAG	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	105, 719
AhdI	GACNNNNNGTC	1 cut(s)	1064
AjiI	CACGTC	1 cut(s)	609
AjnI	CCWGG	4 cut(s)	367, 831, 985, 1119
AluBI	AGCT	9 cut(s)	79, 346, 529, 566, 722, 855, 886, 1085, 1202
AluI	AGCT	9 cut(s)	79, 346, 529, 566, 722, 855, 886, 1085, 1202
AlwI	GGATC	7 cut(s)	647, 660, 692, 780, 790, 793, 1102
AlwNI	CAGNNNCTG	4 cut(s)	10, 169, 368, 566
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	6 cut(s)	92, 322, 332, 877, 1117, 1160
ApeKI	GCWGC	6 cut(s)	4, 76, 511, 566, 1199, 1202
ApoI	RAATTY	1 cut(s)	941
AspA2I	CCTAGG	1 cut(s)	329
AspS9I	GGNCC	4 cut(s)	92, 140, 365, 877
AsuC2I	CCSGG	2 cut(s)	118, 119
AsuHPI	GGTGA	2 cut(s)	209, 818
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	2 cut(s)	140, 365
AvrII	CCTAGG	1 cut(s)	329
AxyI	CCTNAGG	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	1162
BamHI	GGATCC	2 cut(s)	652, 785
BbrPI	CACGTG	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	5 cut(s)	16, 88, 523, 553, 1189
BccI	CCATC	1 cut(s)	630
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	4 cut(s)	369, 833, 987, 1121
BcnI	CCSGG	2 cut(s)	118, 119
BfaI	CTAG	3 cut(s)	330, 570, 821
BfmI	CTRYAG	1 cut(s)	549
BfrI	CTTAAG	1 cut(s)	436
BisI	GCNGC	8 cut(s)	5, 77, 95, 273, 512, 567, 1200, 1203
BlnI	CCTAGG	1 cut(s)	329
BlsI	GCNGC	8 cut(s)	6, 78, 96, 274, 513, 568, 1201, 1204
Bme1390I	CCNGG	6 cut(s)	118, 119, 369, 833, 987, 1121
Bme18I	GGWCC	2 cut(s)	140, 365
BmeRI	GACNNNNNGTC	1 cut(s)	1064
BmeT110I	CYCGRG	1 cut(s)	117
BmgBI	CACGTC	1 cut(s)	609
BmgT120I	GGNCC	4 cut(s)	92, 140, 365, 877
BmiI	GGNNCC	4 cut(s)	134, 654, 787, 991
BmrFI	CCNGG	6 cut(s)	118, 119, 369, 833, 987, 1121
BmsI	GCATC	2 cut(s)	328, 403
BpiI	GAAGAC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	101
Bpu10I	CCTNAGC	2 cut(s)	468, 601
BpuEI	CTTGAG	2 cut(s)	95, 932
BpuMI	CCSGG	2 cut(s)	118, 119
BsaAI	YACGTR	1 cut(s)	620
BsaJI	CCNNGG	7 cut(s)	117, 136, 246, 329, 368, 670, 985
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 463, 910, 1158
Bse21I	CCTNAGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	502
BseBI	CCWGG	4 cut(s)	369, 833, 987, 1121
BseDI	CCNNGG	7 cut(s)	117, 136, 246, 329, 368, 670, 985
BseGI	GGATG	5 cut(s)	343, 433, 641, 1055, 1084
BseLI	CCNNNNNNNGG	4 cut(s)	124, 463, 910, 1158
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	535
BseXI	GCAGC	5 cut(s)	16, 88, 523, 553, 1189
BseYI	CCCAGC	2 cut(s)	356, 579
BshFI	GGCC	6 cut(s)	94, 324, 334, 879, 1119, 1162
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	118, 335
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	4 cut(s)	124, 463, 910, 1158
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	6 cut(s)	94, 324, 334, 879, 1119, 1162
BsoBI	CYCGRG	1 cut(s)	117
Bsp143I	GATC	6 cut(s)	595, 652, 684, 785, 795, 1094
BspACI	CCGC	3 cut(s)	95, 273, 957
BspANI	GGCC	6 cut(s)	94, 324, 334, 879, 1119, 1162
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	4 cut(s)	134, 654, 787, 991
BspPI	GGATC	7 cut(s)	647, 660, 692, 780, 790, 793, 1102
BspTI	CTTAAG	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	502
BssECI	CCNNGG	7 cut(s)	117, 136, 246, 329, 368, 670, 985
BssMI	GATC	6 cut(s)	595, 652, 684, 785, 795, 1094
BssT1I	CCWWGG	3 cut(s)	246, 329, 670
Bst2UI	CCWGG	4 cut(s)	369, 833, 987, 1121
Bst4CI	ACNGT	4 cut(s)	27, 151, 458, 1033
BstAFI	CTTAAG	1 cut(s)	436
BstBAI	YACGTR	1 cut(s)	620
BstC8I	GCNNGC	4 cut(s)	99, 326, 509, 929
BstDEI	CTNAG	4 cut(s)	288, 468, 534, 601
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	5 cut(s)	343, 433, 641, 1055, 1084
BstKTI	GATC	6 cut(s)	598, 655, 687, 788, 798, 1097
BstMBI	GATC	6 cut(s)	595, 652, 684, 785, 795, 1094
BstMWI	GCNNNNNNNGC	1 cut(s)	845
BstNI	CCWGG	4 cut(s)	369, 833, 987, 1121
BstSCI	CCNGG	6 cut(s)	116, 117, 367, 831, 985, 1119
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	5 cut(s)	16, 88, 523, 553, 1189
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	4 cut(s)	652, 684, 785, 795
BstXI	CCANNNNNNTGG	1 cut(s)	1170
BstYI	RGATCY	4 cut(s)	652, 684, 785, 795
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	6 cut(s)	94, 324, 334, 879, 1119, 1162
BtgI	CCRYGG	1 cut(s)	136
BtrI	CACGTC	1 cut(s)	609
BtsCI	GGATG	5 cut(s)	343, 433, 641, 1055, 1084
BtsI	GCAGTG	2 cut(s)	129, 647
BtsIMutI	CAGTG	2 cut(s)	129, 647
Cac8I	GCNNGC	4 cut(s)	99, 326, 509, 929
CaiI	CAGNNNCTG	4 cut(s)	10, 169, 368, 566
Cfr13I	GGNCC	4 cut(s)	92, 140, 365, 877
Cfr9I	CCCGGG	1 cut(s)	117
CseI	GACGC	2 cut(s)	82, 1178
CsiI	ACCWGGT	1 cut(s)	831
Csp6I	GTAC	1 cut(s)	1029
CviQI	GTAC	1 cut(s)	1029
DdeI	CTNAG	4 cut(s)	288, 468, 534, 601
DpnI	GATC	6 cut(s)	597, 654, 686, 787, 797, 1096
DpnII	GATC	6 cut(s)	595, 652, 684, 785, 795, 1094
DraI	TTTAAA	1 cut(s)	1090
DriI	GACNNNNNGTC	1 cut(s)	1064
EaeI	YGGCCR	1 cut(s)	1160
Eam1105I	GACNNNNNGTC	1 cut(s)	1064
Eco130I	CCWWGG	3 cut(s)	246, 329, 670
Eco47I	GGWCC	2 cut(s)	140, 365
Eco57I	CTGAAG	2 cut(s)	146, 402
Eco72I	CACGTG	1 cut(s)	620
Eco81I	CCTNAGG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	4 cut(s)	367, 831, 985, 1119
EcoT14I	CCWWGG	3 cut(s)	246, 329, 670
ErhI	CCWWGG	3 cut(s)	246, 329, 670
FaqI	GGGAC	1 cut(s)	100
Fnu4HI	GCNGC	8 cut(s)	5, 77, 95, 273, 512, 567, 1200, 1203
FokI	GGATG	5 cut(s)	350, 440, 648, 1062, 1091
Fsp4HI	GCNGC	8 cut(s)	5, 77, 95, 273, 512, 567, 1200, 1203
FspBI	CTAG	3 cut(s)	330, 570, 821
GluI	GCNGC	8 cut(s)	5, 77, 95, 273, 512, 567, 1200, 1203
GsaI	CCCAGC	2 cut(s)	360, 583
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	6 cut(s)	94, 324, 334, 879, 1119, 1162
HapII	CCGG	2 cut(s)	118, 335
HgaI	GACGC	2 cut(s)	82, 1178
HincII	GTYRAC	4 cut(s)	174, 475, 612, 1107
HindII	GTYRAC	4 cut(s)	174, 475, 612, 1107
HindIII	AAGCTT	2 cut(s)	344, 1083
HinfI	GANTC	3 cut(s)	251, 297, 542
HpaI	GTTAAC	1 cut(s)	1107
HpaII	CCGG	2 cut(s)	118, 335
HphI	GGTGA	2 cut(s)	209, 818
Hpy166II	GTNNAC	6 cut(s)	174, 200, 475, 612, 1058, 1107
Hpy188I	TCNGA	4 cut(s)	12, 657, 994, 1015
Hpy188III	TCNNGA	3 cut(s)	143, 363, 821
Hpy8I	GTNNAC	6 cut(s)	174, 200, 475, 612, 1058, 1107
Hpy99I	CGWCG	1 cut(s)	1194
HpyAV	CCTTC	7 cut(s)	70, 170, 532, 761, 776, 970, 1126
HpyCH4III	ACNGT	4 cut(s)	27, 151, 458, 1033
HpyCH4IV	ACGT	3 cut(s)	608, 619, 1103
HpyCH4V	TGCA	5 cut(s)	4, 779, 848, 1177, 1199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	845
HpyF3I	CTNAG	4 cut(s)	288, 468, 534, 601
HpySE526I	ACGT	3 cut(s)	608, 619, 1103
KspAI	GTTAAC	1 cut(s)	1107
Kzo9I	GATC	6 cut(s)	595, 652, 684, 785, 795, 1094
LmnI	GCTCC	1 cut(s)	995
Lsp1109I	GCAGC	5 cut(s)	16, 88, 523, 553, 1189
LweI	GCATC	2 cut(s)	328, 403
MabI	ACCWGGT	1 cut(s)	831
MaeI	CTAG	3 cut(s)	330, 570, 821
MaeII	ACGT	3 cut(s)	608, 619, 1103
MaeIII	GTNAC	4 cut(s)	50, 229, 498, 1033
MalI	GATC	6 cut(s)	597, 654, 686, 787, 797, 1096
MboI	GATC	6 cut(s)	595, 652, 684, 785, 795, 1094
MboII	GAAGA	5 cut(s)	226, 306, 566, 679, 974
MflI	RGATCY	4 cut(s)	652, 684, 785, 795
MlsI	TGGCCA	1 cut(s)	1162
MluCI	AATT	5 cut(s)	238, 813, 849, 941, 1023
MluNI	TGGCCA	1 cut(s)	1162
MlyI	GAGTC	2 cut(s)	260, 536
MmeI	TCCRAC	1 cut(s)	372
Mox20I	TGGCCA	1 cut(s)	1162
MscI	TGGCCA	1 cut(s)	1162
MseI	TTAA	9 cut(s)	153, 281, 348, 437, 446, 648, 1089, 1106, 1207
MslI	CAYNNNNRTG	1 cut(s)	1168
Msp20I	TGGCCA	1 cut(s)	1162
MspA1I	CMGCKG	3 cut(s)	79, 97, 1202
MspCI	CTTAAG	1 cut(s)	436
MspI	CCGG	2 cut(s)	118, 335
MspR9I	CCNGG	6 cut(s)	118, 119, 369, 833, 987, 1121
MvaI	CCWGG	4 cut(s)	369, 833, 987, 1121
MwoI	GCNNNNNNNGC	1 cut(s)	845
NciI	CCSGG	2 cut(s)	118, 119
NdeII	GATC	6 cut(s)	595, 652, 684, 785, 795, 1094
NlaIV	GGNNCC	4 cut(s)	134, 654, 787, 991
NmuCI	GTSAC	2 cut(s)	229, 1033
PfeI	GAWTC	1 cut(s)	297
PkrI	GCNGC	8 cut(s)	6, 78, 96, 274, 513, 568, 1201, 1204
PleI	GAGTC	2 cut(s)	259, 536
PmaCI	CACGTG	1 cut(s)	620
PmlI	CACGTG	1 cut(s)	620
PpsI	GAGTC	2 cut(s)	259, 536
Ppu21I	YACGTR	1 cut(s)	620
PpuMI	RGGWCCY	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	4 cut(s)	367, 831, 985, 1119
PspCI	CACGTG	1 cut(s)	620
PspFI	CCCAGC	2 cut(s)	356, 579
PspGI	CCWGG	4 cut(s)	367, 831, 985, 1119
PspN4I	GGNNCC	4 cut(s)	134, 654, 787, 991
PspPI	GGNCC	4 cut(s)	92, 140, 365, 877
PspPPI	RGGWCCY	1 cut(s)	365
PstNI	CAGNNNCTG	4 cut(s)	10, 169, 368, 566
PsuI	RGATCY	4 cut(s)	652, 684, 785, 795
PvuII	CAGCTG	2 cut(s)	79, 1202
RsaI	GTAC	1 cut(s)	1030
RsaNI	GTAC	1 cut(s)	1029
RseI	CAYNNNNRTG	1 cut(s)	1168
SaqAI	TTAA	9 cut(s)	153, 281, 348, 437, 446, 648, 1089, 1106, 1207
SatI	GCNGC	8 cut(s)	5, 77, 95, 273, 512, 567, 1200, 1203
Sau3AI	GATC	6 cut(s)	595, 652, 684, 785, 795, 1094
Sau96I	GGNCC	4 cut(s)	92, 140, 365, 877
SchI	GAGTC	2 cut(s)	260, 536
ScrFI	CCNGG	6 cut(s)	118, 119, 369, 833, 987, 1121
SexAI	ACCWGGT	1 cut(s)	831
SfaNI	GCATC	2 cut(s)	328, 403
SfcI	CTRYAG	1 cut(s)	549
SinI	GGWCC	2 cut(s)	140, 365
SmaI	CCCGGG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	1168
SmlI	CTYRAG	3 cut(s)	110, 436, 947
SmoI	CTYRAG	3 cut(s)	110, 436, 947
Sse9I	AATT	5 cut(s)	238, 813, 849, 941, 1023
SsiI	CCGC	3 cut(s)	95, 273, 957
SspMI	CTAG	3 cut(s)	330, 570, 821
StyD4I	CCNGG	6 cut(s)	116, 117, 367, 831, 985, 1119
StyI	CCWWGG	3 cut(s)	246, 329, 670
TaaI	ACNGT	4 cut(s)	27, 151, 458, 1033
TaiI	ACGT	3 cut(s)	611, 622, 1106
TaqI	TCGA	3 cut(s)	895, 1137, 1192
TasI	AATT	5 cut(s)	238, 813, 849, 941, 1023
TauI	GCSGC	2 cut(s)	97, 275
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	9 cut(s)	153, 281, 348, 437, 446, 648, 1089, 1106, 1207
Tru9I	TTAA	9 cut(s)	153, 281, 348, 437, 446, 648, 1089, 1106, 1207
TscAI	CASTG	2 cut(s)	129, 647
TseFI	GTSAC	2 cut(s)	229, 1033
TseI	GCWGC	6 cut(s)	4, 76, 511, 566, 1199, 1202
Tsp45I	GTSAC	2 cut(s)	229, 1033
TspDTI	ATGAA	3 cut(s)	444, 753, 1095
TspGWI	ACGGA	1 cut(s)	125
TspMI	CCCGGG	1 cut(s)	117
TspRI	CASTG	2 cut(s)	129, 647
Vha464I	CTTAAG	1 cut(s)	436
VpaK11BI	GGWCC	2 cut(s)	140, 365
XapI	RAATTY	1 cut(s)	941
XbaI	TCTAGA	1 cut(s)	820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmaI	CCCGGG	1 cut(s)	117
XmaJI	CCTAGG	1 cut(s)	329
XspI	CTAG	3 cut(s)	330, 570, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.