Rroxscaffold_3G00255220

transferase CAF17 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004121
Physical Location & Seq
Reverse (-)
49469356 .. 49472689
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255220.1

Sequence Viewer

Length: 1209 bp
ATGCAGCGTCTGAAACTTCCACTACGGTTTCCCAAATCCATTTCCTATGGTTACAGAGCCTTCCACGATAAGACGCAGCTGGAGAATGTCGGGCCGCTGGCTTCAATCCTCAAGTCCCGGGCAGTGGTTCGGTTCCGAGGTCCAGATACAGTTAAGTTCCTTCAGGGGCTGTTGACGAATGATGTAAGGAGGTTTGGTGAACCCTTGAGTGAGAAGACCTCAACATTGGTCACACCCAATTTATCCTCGGAGTCCATACCACCTTTGTATGCCGCACTATTAACACCTCAGGGAAGATTCTTATATGATTTCGTCTTGTATGGCCTGCCTAGGCCGGATGCCAAGCTTAATAGGGCTGGGTCGGGACCTGGGGTAGACCCAGATGAGCCGTTGGAGGTCTTTGCTGACGTAGATGCTTCAGTCTTGGACGAACTCATGAGCACCTTAAAGAAATACCGTTTGAGGGCTAAGGTTGACATTGAGAATGTGGCAGACGAGTTACATTGCTGGCAGCGTTATGGGGGAAAGCTATCTGAGAAGGACTCCTCTGTAGAAGAACCAGAAGCTGCTAGTGTTGGTTGGGGTGGTGGTGTTGATTGCTTAGGCATGTCAACTTCACGTGGAGAGCCTTGTGGATGGCAGTGGTTTAAGGATCCGAGATTGGATTGCCTTGGTTTCAGGGGGATCTTCCCGTCTAATACAACACCACCTTTGGTTGAAGCTGACAAAGAAACAGATGAACAAAACTACCTTCTATGGAGAATAGAAAATGGTGTTGCAGAAGGATCAACCGAGATCCCTAAAGGTGAGGCAATTCCTCTAGAATATAACCTGGTGGCTCTAAATGCAATTAGCTTTGACAAAGGGTGTTATGTGGGCCAAGAGCTTGTTGCTCGAACACACCACAGAGGGGTCATTCGCAAACGCCTGCTTCCTCTAAAATTTCTCAAGGACAGCGGAGAAGAAGCAGAGCAGAAGGTTGCCCCTGGCTCCGAAGTGATTGATAGTGTTTCTGACAAGAAAATTGGTACTGTCACAACTCAACTTGGATGTCGTGGACTTGGTGTCTTGCGTTTGGATGAAGCTTTTAAAGGATCAAGTATGTTAACCATACGAGGCCAGGACGATGTGAAGGTCGAGCCTATTAGACCCGATTGGTGGCCGCCTGAATGGTTGCAAGAACATCAGCGTCGAAGTGCAGCTACATAA

Protein Analysis

402

Amino Acids

44.73

Weight (kDa)

5.76

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-barrel_CAF17_C PF25455 307 - 388 1.1e-18 CAF17, C-terminal beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 375
AciI CCGC 4 cut(s) 95, 273, 957, 1163
AclWI GGATC 6 cut(s) 647, 660, 692, 790, 793, 1102
AcoI YGGCCR 1 cut(s) 1160
AcsI RAATTY 1 cut(s) 941
AcuI CTGAAG 2 cut(s) 146, 402
AcvI CACGTG 1 cut(s) 620
AfaI GTAC 1 cut(s) 1030
AfiI CCNNNNNNNGG 4 cut(s) 124, 463, 910, 1158
AgsI TTSAA 2 cut(s) 105, 719
AhdI GACNNNNNGTC 1 cut(s) 1064
AjnI CCWGG 4 cut(s) 367, 831, 985, 1119
AluBI AGCT 9 cut(s) 79, 346, 529, 566, 722, 855, 886, 1085, 1202
AluI AGCT 9 cut(s) 79, 346, 529, 566, 722, 855, 886, 1085, 1202
Alw21I GWGCWC 1 cut(s) 443
AlwI GGATC 6 cut(s) 647, 660, 692, 790, 793, 1102
AlwNI CAGNNNCTG 3 cut(s) 10, 169, 566
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 6 cut(s) 92, 322, 332, 877, 1117, 1160
ApeKI GCWGC 5 cut(s) 4, 76, 511, 566, 1199
ApoI RAATTY 1 cut(s) 941
AspA2I CCTAGG 1 cut(s) 329
AspS9I GGNCC 4 cut(s) 92, 140, 365, 877
AsuC2I CCSGG 2 cut(s) 118, 119
AsuHPI GGTGA 2 cut(s) 209, 818
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 2 cut(s) 140, 365
AvrII CCTAGG 1 cut(s) 329
AxyI CCTNAGG 1 cut(s) 288
BamHI GGATCC 1 cut(s) 652
BarI GAAGNNNNNNTAC 1 cut(s) 1186
BbrPI CACGTG 1 cut(s) 620
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 443
BbvI GCAGC 4 cut(s) 16, 88, 523, 553
BccI CCATC 1 cut(s) 630
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 4 cut(s) 369, 833, 987, 1121
BcnI CCSGG 2 cut(s) 118, 119
BfaI CTAG 3 cut(s) 330, 570, 821
BfmI CTRYAG 1 cut(s) 549
BisI GCNGC 8 cut(s) 5, 77, 95, 273, 512, 567, 1163, 1200
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 8 cut(s) 6, 78, 96, 274, 513, 568, 1164, 1201
Bme1390I CCNGG 6 cut(s) 118, 119, 369, 833, 987, 1121
Bme18I GGWCC 2 cut(s) 140, 365
BmeRI GACNNNNNGTC 1 cut(s) 1064
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 4 cut(s) 92, 140, 365, 877
BmiI GGNNCC 4 cut(s) 134, 366, 654, 991
BmrFI CCNGG 6 cut(s) 118, 119, 369, 833, 987, 1121
BmsI GCATC 2 cut(s) 328, 403
BpiI GAAGAC 1 cut(s) 221
BplI GAGNNNNNCTC 4 cut(s) 203, 235, 527, 559
BpmI CTGGAG 1 cut(s) 101
Bpu10I CCTNAGC 2 cut(s) 468, 601
BpuEI CTTGAG 3 cut(s) 95, 226, 932
BpuMI CCSGG 2 cut(s) 118, 119
BsaAI YACGTR 1 cut(s) 620
BsaJI CCNNGG 7 cut(s) 117, 136, 246, 329, 368, 670, 985
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 463, 910, 1158
Bse21I CCTNAGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 502
BseBI CCWGG 4 cut(s) 369, 833, 987, 1121
BseDI CCNNGG 7 cut(s) 117, 136, 246, 329, 368, 670, 985
BseGI GGATG 4 cut(s) 343, 641, 1055, 1084
BseLI CCNNNNNNNGG 4 cut(s) 124, 463, 910, 1158
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 2 cut(s) 302, 525
BseRI GAGGAG 1 cut(s) 535
BseXI GCAGC 4 cut(s) 16, 88, 523, 553
BseYI CCCAGC 1 cut(s) 356
BshFI GGCC 6 cut(s) 94, 324, 334, 879, 1119, 1162
BsiHKAI GWGCWC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 2 cut(s) 118, 335
BslFI GGGAC 2 cut(s) 100, 378
BslI CCNNNNNNNGG 4 cut(s) 124, 463, 910, 1158
BsmFI GGGAC 2 cut(s) 100, 378
BsnI GGCC 6 cut(s) 94, 324, 334, 879, 1119, 1162
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 443
Bsp143I GATC 5 cut(s) 652, 684, 785, 795, 1094
BspACI CCGC 4 cut(s) 95, 273, 957, 1163
BspANI GGCC 6 cut(s) 94, 324, 334, 879, 1119, 1162
BspCNI CTCAG 2 cut(s) 301, 526
BspHI TCATGA 1 cut(s) 435
BspLI GGNNCC 4 cut(s) 134, 366, 654, 991
BspPI GGATC 6 cut(s) 647, 660, 692, 790, 793, 1102
BsrDI GCAATG 1 cut(s) 502
BssECI CCNNGG 7 cut(s) 117, 136, 246, 329, 368, 670, 985
BssMI GATC 5 cut(s) 652, 684, 785, 795, 1094
BssT1I CCWWGG 2 cut(s) 329, 670
Bst2UI CCWGG 4 cut(s) 369, 833, 987, 1121
Bst4CI ACNGT 4 cut(s) 27, 151, 458, 1033
BstBAI YACGTR 1 cut(s) 620
BstC8I GCNNGC 4 cut(s) 99, 326, 509, 929
BstDEI CTNAG 4 cut(s) 288, 468, 534, 601
BstF5I GGATG 4 cut(s) 343, 641, 1055, 1084
BstKTI GATC 5 cut(s) 655, 687, 788, 798, 1097
BstMBI GATC 5 cut(s) 652, 684, 785, 795, 1094
BstMWI GCNNNNNNNGC 1 cut(s) 845
BstNI CCWGG 4 cut(s) 369, 833, 987, 1121
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 6 cut(s) 116, 117, 367, 831, 985, 1119
BstSFI CTRYAG 1 cut(s) 549
BstV1I GCAGC 4 cut(s) 16, 88, 523, 553
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 3 cut(s) 652, 684, 795
BstYI RGATCY 3 cut(s) 652, 684, 795
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 6 cut(s) 94, 324, 334, 879, 1119, 1162
BtsCI GGATG 4 cut(s) 343, 641, 1055, 1084
BtsI GCAGTG 2 cut(s) 129, 647
BtsIMutI CAGTG 2 cut(s) 129, 647
Cac8I GCNNGC 4 cut(s) 99, 326, 509, 929
CaiI CAGNNNCTG 3 cut(s) 10, 169, 566
CciI TCATGA 1 cut(s) 435
Cfr13I GGNCC 4 cut(s) 92, 140, 365, 877
Cfr9I CCCGGG 1 cut(s) 117
CseI GACGC 2 cut(s) 82, 1178
CsiI ACCWGGT 1 cut(s) 831
Csp6I GTAC 1 cut(s) 1029
CviAII CATG 2 cut(s) 436, 607
CviQI GTAC 1 cut(s) 1029
DdeI CTNAG 4 cut(s) 288, 468, 534, 601
DpnI GATC 5 cut(s) 654, 686, 787, 797, 1096
DpnII GATC 5 cut(s) 652, 684, 785, 795, 1094
DraI TTTAAA 1 cut(s) 1090
DriI GACNNNNNGTC 1 cut(s) 1064
EaeI YGGCCR 1 cut(s) 1160
Eam1105I GACNNNNNGTC 1 cut(s) 1064
Eco130I CCWWGG 2 cut(s) 329, 670
Eco47I GGWCC 2 cut(s) 140, 365
Eco57I CTGAAG 2 cut(s) 146, 402
Eco72I CACGTG 1 cut(s) 620
Eco81I CCTNAGG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 4 cut(s) 367, 831, 985, 1119
EcoT14I CCWWGG 2 cut(s) 329, 670
ErhI CCWWGG 2 cut(s) 329, 670
FaeI CATG 2 cut(s) 439, 610
FaqI GGGAC 2 cut(s) 100, 378
FatI CATG 2 cut(s) 435, 606
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 8 cut(s) 5, 77, 95, 273, 512, 567, 1163, 1200
FokI GGATG 4 cut(s) 350, 648, 1062, 1091
Fsp4HI GCNGC 8 cut(s) 5, 77, 95, 273, 512, 567, 1163, 1200
FspBI CTAG 3 cut(s) 330, 570, 821
GluI GCNGC 8 cut(s) 5, 77, 95, 273, 512, 567, 1163, 1200
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 6 cut(s) 94, 324, 334, 879, 1119, 1162
HapII CCGG 2 cut(s) 118, 335
HgaI GACGC 2 cut(s) 82, 1178
Hin1II CATG 2 cut(s) 439, 610
HincII GTYRAC 4 cut(s) 174, 475, 612, 1107
HindII GTYRAC 4 cut(s) 174, 475, 612, 1107
HindIII AAGCTT 2 cut(s) 344, 1083
HinfI GANTC 3 cut(s) 251, 297, 542
HpaI GTTAAC 1 cut(s) 1107
HpaII CCGG 2 cut(s) 118, 335
HphI GGTGA 2 cut(s) 209, 818
Hpy166II GTNNAC 7 cut(s) 174, 200, 376, 475, 612, 1058, 1107
Hpy188I TCNGA 7 cut(s) 12, 137, 250, 535, 657, 994, 1015
Hpy188III TCNNGA 4 cut(s) 143, 363, 436, 821
Hpy8I GTNNAC 7 cut(s) 174, 200, 376, 475, 612, 1058, 1107
Hpy99I CGWCG 1 cut(s) 1194
HpyAV CCTTC 7 cut(s) 70, 170, 532, 761, 776, 970, 1126
HpyCH4III ACNGT 4 cut(s) 27, 151, 458, 1033
HpyCH4IV ACGT 2 cut(s) 408, 619
HpyCH4V TGCA 5 cut(s) 4, 779, 848, 1177, 1199
HpyF10VI GCNNNNNNNGC 1 cut(s) 845
HpyF3I CTNAG 4 cut(s) 288, 468, 534, 601
HpySE526I ACGT 2 cut(s) 408, 619
Hsp92II CATG 2 cut(s) 439, 610
KspAI GTTAAC 1 cut(s) 1107
Kzo9I GATC 5 cut(s) 652, 684, 785, 795, 1094
LmnI GCTCC 1 cut(s) 995
Lsp1109I GCAGC 4 cut(s) 16, 88, 523, 553
LweI GCATC 2 cut(s) 328, 403
MabI ACCWGGT 1 cut(s) 831
MaeI CTAG 3 cut(s) 330, 570, 821
MaeII ACGT 2 cut(s) 408, 619
MaeIII GTNAC 4 cut(s) 50, 229, 498, 1033
MalI GATC 5 cut(s) 654, 686, 787, 797, 1096
MboI GATC 5 cut(s) 652, 684, 785, 795, 1094
MboII GAAGA 5 cut(s) 226, 306, 566, 679, 974
MflI RGATCY 3 cut(s) 652, 684, 795
MhlI GDGCHC 1 cut(s) 443
MluCI AATT 5 cut(s) 238, 813, 849, 941, 1023
MlyI GAGTC 2 cut(s) 260, 536
MmeI TCCRAC 1 cut(s) 372
MseI TTAA 7 cut(s) 153, 281, 348, 446, 648, 1089, 1106
MspA1I CMGCKG 3 cut(s) 79, 97, 957
MspI CCGG 2 cut(s) 118, 335
MspR9I CCNGG 6 cut(s) 118, 119, 369, 833, 987, 1121
MvaI CCWGG 4 cut(s) 369, 833, 987, 1121
MwoI GCNNNNNNNGC 1 cut(s) 845
NciI CCSGG 2 cut(s) 118, 119
NdeII GATC 5 cut(s) 652, 684, 785, 795, 1094
NlaIII CATG 2 cut(s) 439, 610
NlaIV GGNNCC 4 cut(s) 134, 366, 654, 991
NmuCI GTSAC 2 cut(s) 229, 1033
NspI RCATGY 1 cut(s) 610
PagI TCATGA 1 cut(s) 435
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 8 cut(s) 6, 78, 96, 274, 513, 568, 1164, 1201
PleI GAGTC 2 cut(s) 259, 536
PmaCI CACGTG 1 cut(s) 620
PmlI CACGTG 1 cut(s) 620
PpsI GAGTC 2 cut(s) 259, 536
Ppu21I YACGTR 1 cut(s) 620
PpuMI RGGWCCY 1 cut(s) 365
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 4 cut(s) 367, 831, 985, 1119
PspCI CACGTG 1 cut(s) 620
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 4 cut(s) 367, 831, 985, 1119
PspN4I GGNNCC 4 cut(s) 134, 366, 654, 991
PspPI GGNCC 4 cut(s) 92, 140, 365, 877
PspPPI RGGWCCY 1 cut(s) 365
PstNI CAGNNNCTG 3 cut(s) 10, 169, 566
PsuI RGATCY 3 cut(s) 652, 684, 795
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 1 cut(s) 1030
RsaNI GTAC 1 cut(s) 1029
SaqAI TTAA 7 cut(s) 153, 281, 348, 446, 648, 1089, 1106
SatI GCNGC 8 cut(s) 5, 77, 95, 273, 512, 567, 1163, 1200
Sau3AI GATC 5 cut(s) 652, 684, 785, 795, 1094
Sau96I GGNCC 4 cut(s) 92, 140, 365, 877
SchI GAGTC 2 cut(s) 260, 536
ScrFI CCNGG 6 cut(s) 118, 119, 369, 833, 987, 1121
SduI GDGCHC 1 cut(s) 443
SexAI ACCWGGT 1 cut(s) 831
SfaNI GCATC 2 cut(s) 328, 403
SfcI CTRYAG 1 cut(s) 549
SinI GGWCC 2 cut(s) 140, 365
SmaI CCCGGG 1 cut(s) 119
SmlI CTYRAG 3 cut(s) 110, 205, 947
SmoI CTYRAG 3 cut(s) 110, 205, 947
Sse9I AATT 5 cut(s) 238, 813, 849, 941, 1023
SsiI CCGC 4 cut(s) 95, 273, 957, 1163
SspMI CTAG 3 cut(s) 330, 570, 821
StyD4I CCNGG 6 cut(s) 116, 117, 367, 831, 985, 1119
StyI CCWWGG 2 cut(s) 329, 670
TaaI ACNGT 4 cut(s) 27, 151, 458, 1033
TaiI ACGT 2 cut(s) 411, 622
TaqI TCGA 3 cut(s) 895, 1137, 1192
TasI AATT 5 cut(s) 238, 813, 849, 941, 1023
TauI GCSGC 3 cut(s) 97, 275, 1165
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 7 cut(s) 153, 281, 348, 446, 648, 1089, 1106
Tru9I TTAA 7 cut(s) 153, 281, 348, 446, 648, 1089, 1106
TscAI CASTG 2 cut(s) 129, 647
TseFI GTSAC 2 cut(s) 229, 1033
TseI GCWGC 5 cut(s) 4, 76, 511, 566, 1199
Tsp45I GTSAC 2 cut(s) 229, 1033
TspDTI ATGAA 2 cut(s) 753, 1095
TspMI CCCGGG 1 cut(s) 117
TspRI CASTG 2 cut(s) 129, 647
VpaK11BI GGWCC 2 cut(s) 140, 365
XapI RAATTY 1 cut(s) 941
XbaI TCTAGA 1 cut(s) 820
XceI RCATGY 1 cut(s) 610
XmaI CCCGGG 1 cut(s) 117
XmaJI CCTAGG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 375
XspI CTAG 3 cut(s) 330, 570, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.