Prupe.5G080700_v2.0.a1

At4g22758-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011189
Physical Location & Seq
Forward (+)
9433712 .. 9435832
2121 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G080700.2

Sequence Viewer

Length: 804 bp
ATGTCAGAGAGGGGTCACCGGCGACGATCTCAGGCGACCAGAGGCCGGAAAGTAAGGCCGCCGAACCCGTCTCCGTCGCCGCACAGACGGAGCTCTCAAACTCGGGGATCGCCCAAGCAGCACCACCATCACCACCACTCTAAGCCTATCAAGATTCTCAAGCGATGCTCTTCCGAGCCCATATTGTTCTGCTCGTCGTCTGGTAGCGATTTTGGGGAGGAGGGTTTTCGTGTTCGAGACCTGAGGTCCGAGCCGGAGGGTGTTCTGTTCCGGCCTCAGACTTGTACGGACATCTTTGCTTCGTCTCCTTCGTTGATGATGCCCTTCTCCCCCAAGAAGCACGAGGGATACATGAAAGATGCAAAGGTGGTTTTGAATGTGTCCGTTGAAGGAAGCCCGGGGCCGGTTCGAGCCATGGTTAAGCTGGGATCCACAGTGGACGAGACAATCAAGCTTGTTGTTGACAAATATAGCAAAGAAGGTCGAACTCCCAAGCTTGATAAGGATGAGGCTTTGTCGTTTGAGTTGCATCAGTCCTATTTCAGCCTTCAAAGTTTGGATAAATCAGAAGTAATTGGGGATTGTGGCAGCAGAAGCTTCTATCTTCGAAAAAACAGCAGCAATCACAGTAGCAACAATGGAGGATCAACTTCTTTCACCTCCAAAGCCGTTCCTGCGAGAGCAAACTCTCCTCCACCGGCGGCACGCCCTGTCTTCTTACTCCCGAATTTTTTCGCTCGTAAACTTGGGAAAATCATCAGGAGGACGCATAAGCTTTGGAGAATCATAATCTGCATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

29.93

Weight (kDa)

10.33

Isoelectric Point (pI)

72.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 59, 80, 701
AclWI GGATC 4 cut(s) 115, 423, 436, 652
AcsI RAATTY 1 cut(s) 727
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 2 cut(s) 45, 403
AgsI TTSAA 3 cut(s) 376, 389, 551
AhdI GACNNNNNGTC 1 cut(s) 244
AluBI AGCT 6 cut(s) 93, 424, 454, 496, 597, 775
AluI AGCT 6 cut(s) 93, 424, 454, 496, 597, 775
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 4 cut(s) 75, 231, 309, 437
AlwI GGATC 4 cut(s) 115, 423, 436, 652
Ama87I CYCGRG 2 cut(s) 102, 397
AoxI GGCC 4 cut(s) 43, 56, 272, 401
ApeKI GCWGC 3 cut(s) 118, 588, 618
ApoI RAATTY 1 cut(s) 727
Asp700I GAANNNNTTC 1 cut(s) 731
AspS9I GGNCC 2 cut(s) 246, 401
AsuC2I CCSGG 2 cut(s) 398, 399
AsuHPI GGTGA 3 cut(s) 8, 122, 649
AsuII TTCGAA 1 cut(s) 607
AvaI CYCGRG 2 cut(s) 102, 397
AvaII GGWCC 1 cut(s) 246
AxyI CCTNAGG 1 cut(s) 242
BamHI GGATCC 1 cut(s) 428
BanII GRGCYC 2 cut(s) 95, 180
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 706
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 130, 600, 630
BccI CCATC 1 cut(s) 135
BceAI ACGGC 1 cut(s) 653
BciVI GTATCC 1 cut(s) 341
BcnI CCSGG 2 cut(s) 398, 399
BcoDI GTCTC 4 cut(s) 75, 231, 309, 437
BfuI GTATCC 1 cut(s) 341
BisI GCNGC 6 cut(s) 59, 80, 119, 589, 619, 702
BlsI GCNGC 6 cut(s) 60, 81, 120, 590, 620, 703
Bme1390I CCNGG 2 cut(s) 398, 399
Bme18I GGWCC 1 cut(s) 246
BmeRI GACNNNNNGTC 1 cut(s) 244
BmeT110I CYCGRG 2 cut(s) 102, 397
BmgT120I GGNCC 2 cut(s) 246, 401
BmiI GGNNCC 2 cut(s) 402, 430
BmrFI CCNGG 2 cut(s) 398, 399
BmsI GCATC 4 cut(s) 155, 309, 349, 538
BpiI GAAGAC 1 cut(s) 706
Bpu14I TTCGAA 1 cut(s) 607
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 2 cut(s) 398, 399
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 397, 398, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 403
Bse118I RCCGGY 3 cut(s) 18, 403, 697
Bse21I CCTNAGG 1 cut(s) 242
BseDI CCNNGG 3 cut(s) 397, 398, 414
BseGI GGATG 1 cut(s) 511
BseLI CCNNNNNNNGG 2 cut(s) 45, 403
BseMII CTCAG 3 cut(s) 44, 233, 290
BseRI GAGGAG 2 cut(s) 233, 681
BseXI GCAGC 3 cut(s) 130, 600, 630
BseYI CCCAGC 1 cut(s) 424
BshFI GGCC 4 cut(s) 45, 58, 274, 403
BsiHKAI GWGCWC 1 cut(s) 95
BsiHKCI CYCGRG 2 cut(s) 102, 397
BsiSI CCGG 7 cut(s) 19, 46, 254, 271, 398, 404, 698
BslI CCNNNNNNNGG 2 cut(s) 45, 403
BsmAI GTCTC 4 cut(s) 75, 231, 309, 437
BsmBI CGTCTC 2 cut(s) 75, 309
BsnI GGCC 4 cut(s) 45, 58, 274, 403
Bso31I GGTCTC 1 cut(s) 231
BsoBI CYCGRG 2 cut(s) 102, 397
Bsp119I TTCGAA 1 cut(s) 607
Bsp1286I GDGCHC 2 cut(s) 95, 180
Bsp143I GATC 4 cut(s) 26, 107, 428, 644
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 3 cut(s) 59, 80, 701
BspANI GGCC 4 cut(s) 45, 58, 274, 403
BspCNI CTCAG 3 cut(s) 43, 234, 289
BspLI GGNNCC 2 cut(s) 402, 430
BspPI GGATC 4 cut(s) 115, 423, 436, 652
BspQI GCTCTTC 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 607
BspTNI GGTCTC 1 cut(s) 231
BsrFI RCCGGY 3 cut(s) 18, 403, 697
BssAI RCCGGY 3 cut(s) 18, 403, 697
BssECI CCNNGG 3 cut(s) 397, 398, 414
BssMI GATC 4 cut(s) 26, 107, 428, 644
BssSI CACGAG 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 436, 629
Bst6I CTCTTC 1 cut(s) 175
BstBI TTCGAA 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 706
BstDEI CTNAG 4 cut(s) 30, 141, 242, 276
BstDSI CCRYGG 1 cut(s) 414
BstEII GGTNACC 1 cut(s) 14
BstF5I GGATG 1 cut(s) 511
BstKTI GATC 4 cut(s) 29, 110, 431, 647
BstMAI GTCTC 4 cut(s) 75, 231, 309, 437
BstMBI GATC 4 cut(s) 26, 107, 428, 644
BstMWI GCNNNNNNNGC 3 cut(s) 118, 594, 674
BstPI GGTNACC 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 396, 397
BstV1I GCAGC 3 cut(s) 130, 600, 630
BstV2I GAAGAC 1 cut(s) 706
BstX2I RGATCY 1 cut(s) 428
BstYI RGATCY 1 cut(s) 428
Bsu36I CCTNAGG 1 cut(s) 242
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 4 cut(s) 45, 58, 274, 403
BtgI CCRYGG 1 cut(s) 414
BtgZI GCGATG 1 cut(s) 178
BtsCI GGATG 1 cut(s) 511
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 1 cut(s) 706
Cfr10I RCCGGY 3 cut(s) 18, 403, 697
Cfr13I GGNCC 2 cut(s) 246, 401
Cfr9I CCCGGG 1 cut(s) 397
CseI GACGC 1 cut(s) 775
Csp6I GTAC 1 cut(s) 285
CviAII CATG 3 cut(s) 352, 415, 796
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 4 cut(s) 30, 141, 242, 276
DpnI GATC 4 cut(s) 28, 109, 430, 646
DpnII GATC 4 cut(s) 26, 107, 428, 644
DriI GACNNNNNGTC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 175
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 414
Eco24I GRGCYC 2 cut(s) 95, 180
Eco31I GGTCTC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 242
Eco88I CYCGRG 2 cut(s) 102, 397
Eco91I GGTNACC 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 93
EcoO65I GGTNACC 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 414
EcoT38I GRGCYC 2 cut(s) 95, 180
ErhI CCWWGG 1 cut(s) 414
Esp3I CGTCTC 2 cut(s) 75, 309
FaeI CATG 3 cut(s) 355, 418, 799
FaiI YATR 7 cut(s) 182, 353, 416, 471, 771, 788, 797
FatI CATG 3 cut(s) 351, 414, 795
Fnu4HI GCNGC 6 cut(s) 59, 80, 119, 589, 619, 702
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 2 cut(s) 95, 180
Fsp4HI GCNGC 6 cut(s) 59, 80, 119, 589, 619, 702
GluI GCNGC 6 cut(s) 59, 80, 119, 589, 619, 702
GsaI CCCAGC 1 cut(s) 428
HaeIII GGCC 4 cut(s) 45, 58, 274, 403
HapII CCGG 7 cut(s) 19, 46, 254, 271, 398, 404, 698
HgaI GACGC 1 cut(s) 775
Hin1II CATG 3 cut(s) 355, 418, 799
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 4 cut(s) 452, 494, 595, 773
HinfI GANTC 2 cut(s) 154, 783
HpaII CCGG 7 cut(s) 19, 46, 254, 271, 398, 404, 698
HphI GGTGA 3 cut(s) 8, 122, 649
Hpy166II GTNNAC 3 cut(s) 439, 463, 743
Hpy188I TCNGA 5 cut(s) 7, 175, 250, 279, 568
Hpy188III TCNNGA 4 cut(s) 151, 236, 724, 760
Hpy8I GTNNAC 3 cut(s) 439, 463, 743
Hpy99I CGWCG 3 cut(s) 27, 79, 199
HpyAV CCTTC 5 cut(s) 318, 334, 383, 473, 557
HpyCH4III ACNGT 2 cut(s) 436, 629
HpyCH4V TGCA 3 cut(s) 362, 529, 795
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 594, 674
HpyF3I CTNAG 4 cut(s) 30, 141, 242, 276
Hsp92II CATG 3 cut(s) 355, 418, 799
Kzo9I GATC 4 cut(s) 26, 107, 428, 644
LguI GCTCTTC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 90
Lsp1109I GCAGC 3 cut(s) 130, 600, 630
LweI GCATC 4 cut(s) 155, 309, 349, 538
MaeIII GTNAC 1 cut(s) 14
MalI GATC 4 cut(s) 28, 109, 430, 646
MboI GATC 4 cut(s) 26, 107, 428, 644
MboII GAAGA 3 cut(s) 162, 596, 706
MflI RGATCY 1 cut(s) 428
MhlI GDGCHC 2 cut(s) 95, 180
MluCI AATT 2 cut(s) 573, 727
MroXI GAANNNNTTC 1 cut(s) 731
MseI TTAA 1 cut(s) 420
MspI CCGG 7 cut(s) 19, 46, 254, 271, 398, 404, 698
MspR9I CCNGG 2 cut(s) 398, 399
MwoI GCNNNNNNNGC 3 cut(s) 118, 594, 674
NciI CCSGG 2 cut(s) 398, 399
NcoI CCATGG 1 cut(s) 414
NdeII GATC 4 cut(s) 26, 107, 428, 644
NlaIII CATG 3 cut(s) 355, 418, 799
NlaIV GGNNCC 2 cut(s) 402, 430
NmuCI GTSAC 1 cut(s) 14
NspV TTCGAA 1 cut(s) 607
PciSI GCTCTTC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 731
PfeI GAWTC 2 cut(s) 154, 783
PkrI GCNGC 6 cut(s) 60, 81, 120, 590, 620, 703
Psp124BI GAGCTC 1 cut(s) 95
PspEI GGTNACC 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 402, 430
PspPI GGNCC 2 cut(s) 246, 401
PsuI RGATCY 1 cut(s) 428
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SacI GAGCTC 1 cut(s) 95
SapI GCTCTTC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 6 cut(s) 59, 80, 119, 589, 619, 702
Sau3AI GATC 4 cut(s) 26, 107, 428, 644
Sau96I GGNCC 2 cut(s) 246, 401
ScrFI CCNGG 2 cut(s) 398, 399
SduI GDGCHC 2 cut(s) 95, 180
SfaNI GCATC 4 cut(s) 155, 309, 349, 538
SfuI TTCGAA 1 cut(s) 607
SgrAI CRCCGGYG 2 cut(s) 18, 697
SinI GGWCC 1 cut(s) 246
SmaI CCCGGG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 573, 727
SsiI CCGC 3 cut(s) 59, 80, 701
SstI GAGCTC 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 396, 397
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 2 cut(s) 436, 629
TaqI TCGA 4 cut(s) 235, 409, 484, 607
TasI AATT 2 cut(s) 573, 727
TauI GCSGC 3 cut(s) 61, 82, 704
TfiI GAWTC 2 cut(s) 154, 783
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 3 cut(s) 118, 588, 618
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 368
TspGWI ACGGA 4 cut(s) 63, 103, 302, 373
TspMI CCCGGG 1 cut(s) 397
TspRI CASTG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 1 cut(s) 727
XcmI CCANNNNNNNNNTGG 1 cut(s) 421
XmaI CCCGGG 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.