Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8504683.1

Orthogroup ID

OG0011189

Physical Location & Seq

Genomic Coordinates Reverse (-)

1045 .. 2942

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8504683.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgtcagagaggggtctccggcgacgatctcaggtgacgggtagtggccggaggacccggctttcgaacgcttcgccatcgtcgcaccggaagaccccaccagctcggcgatcgcccaagcaacgttccaagcctataaagattctcaagcgatgctcctccgagcctctgctccggagccctgttgccgatttccgcgaggaggtggtgccgcatgtttgttgggagctgaggtcggagccagagggagttctcttccggcctcaaacttgtgtcgacgtttttgcgtcgtctccgacgttgatgacgcccttctctcccaataatcatgaggcatacaagaaagatgcaaaggtggtcttgaatgtttcggttgaaggaagtccaggaccggtgagggccatggtgaagttgggatctacagttgaagagactatcaagcttgttgtagacaaatatactaaagaagggagaactccgaagcttcttaaggatgaggcatcgtcctttgagttacaccagtcctacttcagccttcaaagtttggataaatcagacttaattggggatgttggtagcagaagcttctatcttcgaaaaagcagcagcaataatggaggatcaactacttctttggaagtcattcctgtgagagcaaactctcctccacctgctctgcgtcctggattgttacttccaaattttattgctcgtagactccgtaaatttgttagaagaactcatagactttggaaggtcatagtctgtatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.83

Weight (kDa)

10.55

Isoelectric Point (pI)

78.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22758 AT4G22758
fragaria_vesca	FvH4_5g00820
malus_domestica	MD04G1078000.v1.1
prunus_persica	Prupe.5G080700_v2.0.a1 Prupe.5G080700_v2.0.a1 Prupe.5G080700_v2.0.a1 Prupe.5G080700_v2.0.a1
pyrus_communis	pycom04g07000
rosa_chinensis	RchiOBHm_Chr7g0201261
rosa_laevigata	RLG00000003682
rosa_multiflora	Rmu_co8504683.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255380
rosa_rugosa	Rorug07G0062300 Rorug07G0062400
rosa_samantha	Rh7AG189600 Rh7BG192100 Rh7CG200500 Rh7DG194600
rosa_wichuraiana	Rw7G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	679
Acc36I	ACCTGC	1 cut(s)	679
AccB1I	GGYRCC	1 cut(s)	208
AccI	GTMKAC	3 cut(s)	276, 450, 715
AccII	CGCG	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	174
AciI	CCGC	2 cut(s)	196, 212
AclI	AACGTT	1 cut(s)	124
AclWI	GGATC	2 cut(s)	424, 628
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	700, 725
AcuI	CTGAAG	1 cut(s)	514
AcyI	GRCGYC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	202
AflII	CTTAAG	1 cut(s)	488
AgeI	ACCGGT	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	364, 377, 428, 539
AjnI	CCWGG	2 cut(s)	385, 682
AluBI	AGCT	5 cut(s)	104, 229, 442, 484, 585
AluI	AGCT	5 cut(s)	104, 229, 442, 484, 585
Alw26I	GTCTC	3 cut(s)	20, 297, 425
AlwI	GGATC	2 cut(s)	424, 628
Aor13HI	TCCGGA	1 cut(s)	174
AoxI	GGCC	3 cut(s)	46, 260, 399
ApeKI	GCWGC	2 cut(s)	603, 606
ApoI	RAATTY	2 cut(s)	700, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	46, 78
AsiGI	ACCGGT	1 cut(s)	391
AsiSI	GCGATCGC	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	642
AspS9I	GGNCC	3 cut(s)	54, 389, 399
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	3 cut(s)	46, 406, 418
AsuII	TTCGAA	2 cut(s)	65, 595
AvaII	GGWCC	2 cut(s)	54, 389
BanI	GGYRCC	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	98
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	615, 618
BccI	CCATC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	2 cut(s)	387, 684
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	3 cut(s)	20, 297, 425
BfmI	CTRYAG	1 cut(s)	420
BfrI	CTTAAG	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	679
BisI	GCNGC	3 cut(s)	212, 604, 607
BlsI	GCNGC	3 cut(s)	213, 605, 608
Bme1390I	CCNGG	3 cut(s)	58, 387, 684
Bme18I	GGWCC	2 cut(s)	54, 389
BmgT120I	GGNCC	3 cut(s)	54, 389, 399
BmiI	GGNNCC	4 cut(s)	56, 179, 210, 240
BmrFI	CCNGG	3 cut(s)	58, 387, 684
BmsI	GCATC	3 cut(s)	143, 337, 509
BpiI	GAAGAC	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	230
Bpu14I	TTCGAA	2 cut(s)	65, 595
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	3 cut(s)	87, 174, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	520
BseAI	TCCGGA	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	387, 684
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	2 cut(s)	499, 574
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	44, 221
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	3 cut(s)	148, 215, 654
BseXI	GCAGC	2 cut(s)	615, 618
Bsh1236I	CGCG	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	113
BshFI	GGCC	3 cut(s)	48, 262, 401
BshNI	GGYRCC	1 cut(s)	208
BshTI	ACCGGT	1 cut(s)	391
BsiEI	CGRYCG	1 cut(s)	113
BsiSI	CCGG	7 cut(s)	19, 49, 58, 88, 175, 259, 392
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	3 cut(s)	20, 297, 425
BsmBI	CGTCTC	1 cut(s)	297
BsnI	GGCC	3 cut(s)	48, 262, 401
Bso31I	GGTCTC	1 cut(s)	20
Bsp119I	TTCGAA	2 cut(s)	65, 595
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp13I	TCCGGA	1 cut(s)	174
Bsp143I	GATC	4 cut(s)	26, 110, 416, 620
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	2 cut(s)	196, 212
BspANI	GGCC	3 cut(s)	48, 262, 401
BspCNI	CTCAG	2 cut(s)	43, 222
BspEI	TCCGGA	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	4 cut(s)	56, 179, 210, 240
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	2 cut(s)	424, 628
BspT104I	TTCGAA	2 cut(s)	65, 595
BspT107I	GGYRCC	1 cut(s)	208
BspTI	CTTAAG	1 cut(s)	488
BspTNI	GGTCTC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	520
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	4 cut(s)	26, 110, 416, 620
BssNI	GRCGYC	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	2 cut(s)	387, 684
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	2 cut(s)	260, 423
BstACI	GRCGYC	1 cut(s)	308
BstAFI	CTTAAG	1 cut(s)	488
BstBI	TTCGAA	2 cut(s)	65, 595
BstDEI	CTNAG	2 cut(s)	30, 230
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	499, 574
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	4 cut(s)	29, 113, 419, 623
BstMAI	GTCTC	3 cut(s)	20, 297, 425
BstMBI	GATC	4 cut(s)	26, 110, 416, 620
BstMCI	CGRYCG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	2 cut(s)	387, 684
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	56, 385, 682
BstSFI	CTRYAG	1 cut(s)	420
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	615, 618
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuRI	GGCC	3 cut(s)	48, 262, 401
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	499, 574
BveI	ACCTGC	1 cut(s)	679
CciI	TCATGA	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	54, 389, 399
CseI	GACGC	3 cut(s)	276, 316, 668
CspAI	ACCGGT	1 cut(s)	391
CviAII	CATG	3 cut(s)	215, 329, 403
DdeI	CTNAG	2 cut(s)	30, 230
DpnI	GATC	4 cut(s)	28, 112, 418, 622
DpnII	GATC	4 cut(s)	26, 110, 416, 620
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	260, 423
EarI	CTCTTC	2 cut(s)	260, 423
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	54, 389
Eco57I	CTGAAG	1 cut(s)	514
EcoO109I	RGGNCCY	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	385, 682
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	297
FaeI	CATG	3 cut(s)	218, 332, 406
FaiI	YATR	9 cut(s)	137, 216, 330, 337, 404, 459, 744, 761, 770
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	3 cut(s)	214, 328, 402
FblI	GTMKAC	3 cut(s)	276, 450, 715
Fnu4HI	GCNGC	3 cut(s)	212, 604, 607
FokI	GGATG	2 cut(s)	506, 581
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	212, 604, 607
GluI	GCNGC	3 cut(s)	212, 604, 607
HaeIII	GGCC	3 cut(s)	48, 262, 401
HapII	CCGG	7 cut(s)	19, 49, 58, 88, 175, 259, 392
HgaI	GACGC	3 cut(s)	276, 316, 668
Hin1I	GRCGYC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	218, 332, 406
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	3 cut(s)	440, 482, 583
HinfI	GANTC	2 cut(s)	142, 717
HpaII	CCGG	7 cut(s)	19, 49, 58, 88, 175, 259, 392
HphI	GGTGA	3 cut(s)	46, 406, 418
Hpy166II	GTNNAC	3 cut(s)	277, 451, 716
Hpy188I	TCNGA	6 cut(s)	7, 163, 238, 297, 480, 556
Hpy188III	TCNNGA	3 cut(s)	175, 329, 361
Hpy8I	GTNNAC	3 cut(s)	277, 451, 716
Hpy99I	CGWCG	5 cut(s)	27, 85, 281, 292, 301
HpyAV	CCTTC	5 cut(s)	322, 371, 461, 545, 748
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	3 cut(s)	124, 279, 299
HpyCH4V	TGCA	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	2 cut(s)	30, 230
HpySE526I	ACGT	3 cut(s)	124, 279, 299
Hsp92I	GRCGYC	1 cut(s)	308
Hsp92II	CATG	3 cut(s)	218, 332, 406
Kpn2I	TCCGGA	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	26, 110, 416, 620
LmnI	GCTCC	5 cut(s)	161, 177, 177, 226, 238
Lsp1109I	GCAGC	2 cut(s)	615, 618
LweI	GCATC	3 cut(s)	143, 337, 509
MaeII	ACGT	3 cut(s)	124, 279, 299
MaeIII	GTNAC	3 cut(s)	34, 513, 690
MalI	GATC	4 cut(s)	28, 112, 418, 622
MboI	GATC	4 cut(s)	26, 110, 416, 620
MboII	GAAGA	5 cut(s)	103, 247, 440, 584, 747
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	3 cut(s)	561, 700, 725
MlyI	GAGTC	1 cut(s)	711
MmeI	TCCRAC	2 cut(s)	216, 320
MroI	TCCGGA	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	2 cut(s)	489, 560
MslI	CAYNNNNRTG	1 cut(s)	647
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	7 cut(s)	19, 49, 58, 88, 175, 259, 392
MspR9I	CCNGG	3 cut(s)	58, 387, 684
MvaI	CCWGG	2 cut(s)	387, 684
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	82
NciI	CCSGG	1 cut(s)	58
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	4 cut(s)	26, 110, 416, 620
NlaIII	CATG	3 cut(s)	218, 332, 406
NlaIV	GGNNCC	4 cut(s)	56, 179, 210, 240
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	218
NspV	TTCGAA	2 cut(s)	65, 595
PagI	TCATGA	1 cut(s)	328
PaqCI	CACCTGC	1 cut(s)	679
PcsI	WCGNNNNNNNCGW	2 cut(s)	296, 718
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	1 cut(s)	142
PfoI	TCCNGGA	2 cut(s)	385, 682
PinAI	ACCGGT	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	213, 605, 608
Ple19I	CGATCG	1 cut(s)	113
PleI	GAGTC	1 cut(s)	711
PpsI	GAGTC	1 cut(s)	711
PpuMI	RGGWCCY	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	385, 682
PspGI	CCWGG	2 cut(s)	385, 682
PspN4I	GGNNCC	4 cut(s)	56, 179, 210, 240
PspPI	GGNCC	3 cut(s)	54, 389, 399
PspPPI	RGGWCCY	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	416
PvuI	CGATCG	1 cut(s)	113
RgaI	GCGATCGC	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	647
SalI	GTCGAC	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	489, 560
SatI	GCNGC	3 cut(s)	212, 604, 607
Sau3AI	GATC	4 cut(s)	26, 110, 416, 620
Sau96I	GGNCC	3 cut(s)	54, 389, 399
SchI	GAGTC	1 cut(s)	711
ScrFI	CCNGG	3 cut(s)	58, 387, 684
SduI	GDGCHC	1 cut(s)	182
SfaAI	GCGATCGC	1 cut(s)	113
SfaNI	GCATC	3 cut(s)	143, 337, 509
SfcI	CTRYAG	1 cut(s)	420
SfuI	TTCGAA	2 cut(s)	65, 595
SgfI	GCGATCGC	1 cut(s)	113
SinI	GGWCC	2 cut(s)	54, 389
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	146, 488
SmoI	CTYRAG	2 cut(s)	146, 488
Sse9I	AATT	3 cut(s)	561, 700, 725
SsiI	CCGC	2 cut(s)	196, 212
StyD4I	CCNGG	3 cut(s)	56, 385, 682
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	3 cut(s)	127, 282, 302
TaqI	TCGA	3 cut(s)	65, 276, 595
TasI	AATT	3 cut(s)	561, 700, 725
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	489, 560
Tru9I	TTAA	2 cut(s)	489, 560
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	603, 606
Tsp45I	GTSAC	1 cut(s)	34
TspGWI	ACGGA	1 cut(s)	710
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	54, 389
XapI	RAATTY	2 cut(s)	700, 725
XceI	RCATGY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmiI	GTMKAC	3 cut(s)	276, 450, 715
XmnI	GAANNNNTTC	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.