Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012668

Physical Location & Seq

Genomic Coordinates Forward (+)

11349942 .. 11350813

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G107500.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGTGATGCAGAATCTTTGCATTCCGCTGATGAGCTGAAACGCCAGAAGAAAATCAAATTGGCCATCTATATTACTATTTTCGTTGTGTTTCAGATCATAGTTATCACCACAATGAGTCTCACTGTCATGAAAGTGAAAACCCCCAGGTTCAGGCTAGGCAACATCAATGTCGAAAGCTTCGTATCTGACTCGGCAGCGCCTTCATTCGACACGAAATTCACAACCCAAATCAAGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAATGCTGCCAATATCACGTTTCTACACCAAGGAGCGACTCTGGCAGTAATTGATATCGCAAAAGGCAAGGCTGGATGGCTTTCGACCATAAAAAGAAATGCGGAGGTGAGTTTAAATTCAAATGCAATAACTGGTTCAAACTTTGGAACTGAATTGAGCAGCGGGGTGTTGACGCTCAACAGCGTAGGAAGATTGAACGGAAAAGTTGCAATTATGTTCATCATGAAGAAGAAGAAGGCCGCCAACATGAACTGCACCATAGCTTTTGATGTGACAGCCAAGACCCTCAAATCTTTAGAATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

194

Amino Acids

21.05

Weight (kDa)

9.97

Isoelectric Point (pI)

21.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012668)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Species

Orthologous Gene IDs

prunus_persica

Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	27, 374, 435, 513
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	218, 388
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	4 cut(s)	274, 393, 411, 469
AjnI	CCWGG	1 cut(s)	146
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	3 cut(s)	37, 180, 536
AluI	AGCT	3 cut(s)	37, 180, 536
Alw26I	GTCTC	1 cut(s)	125
AoxI	GGCC	2 cut(s)	63, 510
ApeKI	GCWGC	3 cut(s)	197, 278, 432
ApoI	RAATTY	2 cut(s)	218, 388
AspLEI	GCGC	1 cut(s)	202
AsuHPI	GGTGA	3 cut(s)	17, 100, 391
BalI	TGGCCA	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	209, 265, 444
BccI	CCATC	2 cut(s)	74, 342
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	203
BisI	GCNGC	4 cut(s)	198, 279, 433, 513
BlsI	GCNGC	4 cut(s)	199, 280, 434, 514
Bme1390I	CCNGG	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	265
BmuI	ACTGGG	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	146, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	2 cut(s)	260, 409
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	146, 301
BseGI	GGATG	1 cut(s)	353
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	260, 409
BseXI	GCAGC	3 cut(s)	209, 265, 444
BsgI	GTGCAG	1 cut(s)	511
BshFI	GGCC	2 cut(s)	65, 512
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	125
BsmI	GAATGC	2 cut(s)	22, 578
BsnI	GGCC	2 cut(s)	65, 512
Bsp143I	GATC	2 cut(s)	96, 237
BspACI	CCGC	4 cut(s)	27, 374, 435, 513
BspANI	GGCC	2 cut(s)	65, 512
BspCNI	CTCAG	1 cut(s)	260
BspHI	TCATGA	2 cut(s)	129, 495
BspLI	GGNNCC	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	260, 409
BssECI	CCNNGG	2 cut(s)	146, 301
BssMI	GATC	2 cut(s)	96, 237
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	2 cut(s)	99, 240
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	2 cut(s)	96, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstV1I	GCAGC	3 cut(s)	209, 265, 444
BsuRI	GGCC	2 cut(s)	65, 512
BtsCI	GGATG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	123
CciI	TCATGA	2 cut(s)	129, 495
CfoI	GCGC	1 cut(s)	202
CseI	GACGC	1 cut(s)	454
CviAII	CATG	3 cut(s)	130, 496, 520
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	2 cut(s)	98, 239
DpnII	GATC	2 cut(s)	96, 237
DraI	TTTAAA	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	301
Eco32I	GATATC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	146
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	3 cut(s)	133, 499, 523
FaiI	YATR	8 cut(s)	72, 101, 131, 362, 488, 497, 521, 533
FatI	CATG	3 cut(s)	129, 495, 519
FauI	CCCGC	1 cut(s)	428
Fnu4HI	GCNGC	4 cut(s)	198, 279, 433, 513
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	4 cut(s)	198, 279, 433, 513
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	4 cut(s)	198, 279, 433, 513
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	65, 512
HgaI	GACGC	1 cut(s)	454
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	3 cut(s)	133, 499, 523
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	4 cut(s)	14, 118, 191, 310
HphI	GGTGA	3 cut(s)	17, 100, 391
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	2 cut(s)	96, 190
Hpy188III	TCNNGA	4 cut(s)	130, 235, 241, 496
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	2 cut(s)	213, 502
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	6 cut(s)	11, 22, 398, 482, 528, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	247
HpySE526I	ACGT	1 cut(s)	290
Hsp92II	CATG	3 cut(s)	133, 499, 523
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	96, 237
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	8 cut(s)	59, 133, 139, 160, 241, 299, 330, 390
Lsp1109I	GCAGC	3 cut(s)	209, 265, 444
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	2 cut(s)	98, 239
MboI	GATC	2 cut(s)	96, 237
MboII	GAAGA	5 cut(s)	61, 474, 511, 514, 517
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	6 cut(s)	59, 218, 321, 388, 425, 483
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	3 cut(s)	127, 185, 304
MnlI	CCTC	2 cut(s)	370, 569
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	3 cut(s)	113, 128, 134
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	29, 435
MspR9I	CCNGG	1 cut(s)	148
Mva1269I	GAATGC	2 cut(s)	22, 578
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	2 cut(s)	96, 237
NlaIII	CATG	3 cut(s)	133, 499, 523
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	544
PagI	TCATGA	2 cut(s)	129, 495
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	2 cut(s)	22, 578
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	199, 280, 434, 514
PleI	GAGTC	3 cut(s)	126, 185, 304
PpsI	GAGTC	3 cut(s)	126, 185, 304
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	262
RseI	CAYNNNNRTG	3 cut(s)	113, 128, 134
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	4 cut(s)	198, 279, 433, 513
Sau3AI	GATC	2 cut(s)	96, 237
SchI	GAGTC	3 cut(s)	127, 185, 304
ScrFI	CCNGG	1 cut(s)	148
SetI	ASST	6 cut(s)	39, 152, 182, 293, 381, 538
SmiMI	CAYNNNNRTG	3 cut(s)	113, 128, 134
Sse9I	AATT	6 cut(s)	59, 218, 321, 388, 425, 483
SsiI	CCGC	4 cut(s)	27, 374, 435, 513
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	3 cut(s)	174, 210, 356
TasI	AATT	6 cut(s)	59, 218, 321, 388, 425, 483
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	3 cut(s)	197, 278, 432
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	5 cut(s)	146, 195, 481, 512, 536
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	130
XapI	RAATTY	2 cut(s)	218, 388
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.