Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012668

Physical Location & Seq

Genomic Coordinates Reverse (-)

11421632 .. 11422237

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G108900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCGGATAAAACCAACCAGACTTACCCTTCAGGATCAGCAAATACAGGTTACACAAGATCCGATGGAGAGTCTCAGCTGTCCTCTCATGAGCTGAAGCGCAAGAAGAGAATCAAATTGGCCATATATATTGCTATTTTTGTTGTGTTTCAGACCATAGTTATCACCATAATGAGTCTCACTGTGTTGAAAGTAAAGACCCCAAAGTTCAGGCTAGGCAACATCAGCGTTGAATCTGACGAGGCAACGTCTTTGAAATTCAAAACCCAAATCAAGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAAAGCTTCCAATGTCACGTTTCAACACCAAGGCAAGATTGTGGGAGTACTTGATATCGAAAAGGGAAAGGTTGGATGGCTTTCGACCATAAAAAGAGATGCGGAGGTGAGTTTGAATTTAGATGCAATAAATGGTTCAAATCTTGGAAGCGAAGTGATGCTCAATAGCGTTGGTAGATTGGAAGGAAAAGTTGCAATTATGTTCATAATGAAGAAGAAGAAGGCTACCAACATGAACTGCACCATAGCTTTTCATGTGAATGAGCAGTCCGTCAGCCCTGTACACTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

202

Amino Acids

22.24

Weight (kDa)

9.89

Isoelectric Point (pI)

21.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012668)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Species

Orthologous Gene IDs

prunus_persica

Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 413
AclWI	GGATC	2 cut(s)	43, 54
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	257, 427
AcuI	CTGAAG	2 cut(s)	15, 116
AfaI	GTAC	2 cut(s)	360, 594
AgsI	TTSAA	8 cut(s)	190, 233, 256, 262, 313, 335, 427, 450
AluBI	AGCT	4 cut(s)	79, 94, 317, 560
AluI	AGCT	4 cut(s)	79, 94, 317, 560
Alw26I	GTCTC	2 cut(s)	78, 182
AlwI	GGATC	2 cut(s)	43, 54
AoxI	GGCC	1 cut(s)	120
ApoI	RAATTY	2 cut(s)	257, 427
AspLEI	GCGC	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	157, 430
BalI	TGGCCA	1 cut(s)	122
BccI	CCATC	2 cut(s)	59, 381
BcoDI	GTCTC	2 cut(s)	78, 182
BfaI	CTAG	1 cut(s)	215
BmcAI	AGTACT	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	301
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	3 cut(s)	400, 424, 459
BmuI	ACTGGG	1 cut(s)	304
BsaJI	CCNNGG	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	392
BseMII	CTCAG	2 cut(s)	89, 300
BseNI	ACTGG	1 cut(s)	299
BsgI	GTGCAG	1 cut(s)	535
BshFI	GGCC	1 cut(s)	122
BsmAI	GTCTC	2 cut(s)	78, 182
BsnI	GGCC	1 cut(s)	122
Bsp1407I	TGTACA	1 cut(s)	592
Bsp143I	GATC	3 cut(s)	35, 59, 276
BspACI	CCGC	2 cut(s)	5, 413
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	2 cut(s)	88, 299
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	2 cut(s)	43, 54
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	3 cut(s)	35, 59, 276
BssT1I	CCWWGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	592
BstDEI	CTNAG	2 cut(s)	75, 286
BstF5I	GGATG	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	3 cut(s)	38, 62, 279
BstMAI	GTCTC	2 cut(s)	78, 182
BstMBI	GATC	3 cut(s)	35, 59, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	392
BtsI	GCAGTG	1 cut(s)	595
BtsIMutI	CAGTG	2 cut(s)	180, 595
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	359, 593
CviAII	CATG	3 cut(s)	89, 544, 566
CviQI	GTAC	2 cut(s)	359, 593
DdeI	CTNAG	2 cut(s)	75, 286
DpnI	GATC	3 cut(s)	37, 61, 278
DpnII	GATC	3 cut(s)	35, 59, 276
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	340
Eco32I	GATATC	1 cut(s)	367
Eco57I	CTGAAG	2 cut(s)	15, 116
EcoRV	GATATC	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	3 cut(s)	92, 547, 569
FatI	CATG	3 cut(s)	88, 543, 565
FokI	GGATG	1 cut(s)	399
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	92, 547, 569
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	4 cut(s)	71, 111, 175, 233
HphI	GGTGA	2 cut(s)	157, 430
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	3 cut(s)	64, 153, 238
Hpy188III	TCNNGA	4 cut(s)	33, 89, 274, 280
Hpy8I	GTNNAC	1 cut(s)	595
HpyAV	CCTTC	3 cut(s)	39, 488, 526
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	2 cut(s)	248, 329
HpyCH4V	TGCA	4 cut(s)	437, 506, 552, 600
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	2 cut(s)	75, 286
HpySE526I	ACGT	2 cut(s)	248, 329
Hsp92II	CATG	3 cut(s)	92, 547, 569
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	35, 59, 276
LpnPI	CCDG	5 cut(s)	18, 32, 33, 196, 280
LweI	GCATC	3 cut(s)	400, 424, 459
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	2 cut(s)	248, 329
MaeIII	GTNAC	2 cut(s)	50, 325
MalI	GATC	3 cut(s)	37, 61, 278
MboI	GATC	3 cut(s)	35, 59, 276
MboII	GAAGA	4 cut(s)	118, 535, 538, 541
MflI	RGATCY	1 cut(s)	59
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	4 cut(s)	116, 257, 427, 507
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	2 cut(s)	80, 184
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	3 cut(s)	94, 235, 409
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MslI	CAYNNNNRTG	2 cut(s)	170, 570
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	3 cut(s)	35, 59, 276
NlaIII	CATG	3 cut(s)	92, 547, 569
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	325
PagI	TCATGA	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	111, 233
PleI	GAGTC	2 cut(s)	79, 183
PpsI	GAGTC	2 cut(s)	79, 183
PspN4I	GGNNCC	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	59
PvuII	CAGCTG	1 cut(s)	79
RsaI	GTAC	2 cut(s)	360, 594
RsaNI	GTAC	2 cut(s)	359, 593
RseI	CAYNNNNRTG	2 cut(s)	170, 570
Sau3AI	GATC	3 cut(s)	35, 59, 276
ScaI	AGTACT	1 cut(s)	360
SchI	GAGTC	2 cut(s)	80, 184
SetI	ASST	9 cut(s)	52, 81, 96, 251, 319, 332, 384, 420, 562
SfaNI	GCATC	3 cut(s)	400, 424, 459
SmiMI	CAYNNNNRTG	2 cut(s)	170, 570
Sse9I	AATT	4 cut(s)	116, 257, 427, 507
SsiI	CCGC	2 cut(s)	5, 413
SspMI	CTAG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	2 cut(s)	251, 332
TaqI	TCGA	2 cut(s)	369, 395
TasI	AATT	4 cut(s)	116, 257, 427, 507
TatI	WGTACW	2 cut(s)	358, 592
TfiI	GAWTC	2 cut(s)	111, 233
TscAI	CASTG	2 cut(s)	187, 602
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	4 cut(s)	505, 536, 554, 560
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	2 cut(s)	187, 602
XapI	RAATTY	2 cut(s)	257, 427
XspI	CTAG	1 cut(s)	215
ZrmI	AGTACT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.