Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012668

Physical Location & Seq

Genomic Coordinates Forward (+)

11387643 .. 11388496

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G108200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTTGGAAAACAAATGATGCAGAATCTTTGCAATCCTCTGACGAGCTGAAACGCCAGAAGAAAATCAAAATGGCCATATATATTACTATTTTCGTTGTGTTTCAGATCATAGTTATCACCGCAATGAGTCTCACTGTGATGAAAGTCAAGACCCCCAAGTTCAGGCTAGGCGGCAACATCAACGTCCAAAGCTTTGAATCTGTCCCGAAAACGCCTTCATTCGACATGAAATTCACAACCCAAATCAGGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAATTCTGCCAATGTCACGTTTCAATACCAAGGCGCGACTGTGGGAGTAATTGATATCGCAAAGGGCAAGGTTGGATGGCTTTCGACCATAAAAAGAAATGTGGAGGTGAGTTTGAGTTCAAGTGCAATAACTGGTTCAAATCTTGGAAGCGAATTGAGCAGCGGGGTGTTGACGCTCAACAGCGTGGGCAGATTGAATGGAAAAGTTGCAATTATGTTCATAATGAAGAAGAAGAAGGCTACCAACATGAACTGCACCATAGCTTTTGATGTGGCAGCCAAGATGCTCAAATCTTTAGAATGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

199

Amino Acids

21.78

Weight (kDa)

10.07

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012668)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Species

Orthologous Gene IDs

prunus_persica

Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	323
AciI	CCGC	3 cut(s)	123, 174, 450
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	165, 249
AgsI	TTSAA	6 cut(s)	200, 289, 311, 408, 426, 484
AluBI	AGCT	3 cut(s)	49, 195, 551
AluI	AGCT	3 cut(s)	49, 195, 551
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	447, 563
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	112, 406
BalI	TGGCCA	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	459, 575
BccI	CCATC	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	3 cut(s)	175, 448, 564
BlsI	GCNGC	3 cut(s)	176, 449, 565
BmiI	GGNNCC	1 cut(s)	277
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	2 cut(s)	10, 561
BmuI	ACTGGG	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 249
Bse1I	ACTGG	2 cut(s)	275, 424
Bse3DI	GCAATG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	2 cut(s)	165, 249
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	275, 424
BseXI	GCAGC	2 cut(s)	459, 575
BsgI	GTGCAG	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	165, 249
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	108, 252
BspACI	CCGC	3 cut(s)	123, 174, 450
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	275, 424
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	108, 252
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	139, 328
BstDEI	CTNAG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	2 cut(s)	111, 255
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	108, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	459, 575
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	135
CfoI	GCGC	1 cut(s)	323
CseI	GACGC	1 cut(s)	469
CviAII	CATG	2 cut(s)	229, 535
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	2 cut(s)	110, 254
DpnII	GATC	2 cut(s)	108, 252
EaeI	YGGCCR	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	316
Eco32I	GATATC	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	2 cut(s)	232, 538
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	228, 534
FauI	CCCGC	1 cut(s)	443
Fnu4HI	GCNGC	3 cut(s)	175, 448, 564
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	175, 448, 564
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	3 cut(s)	175, 448, 564
HaeIII	GGCC	1 cut(s)	77
HgaI	GACGC	1 cut(s)	469
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	232, 538
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HindIII	AAGCTT	1 cut(s)	193
HinfI	GANTC	3 cut(s)	26, 130, 200
HphI	GGTGA	2 cut(s)	112, 406
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	2 cut(s)	43, 108
Hpy188III	TCNNGA	4 cut(s)	151, 208, 250, 256
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	2 cut(s)	228, 517
HpyCH4III	ACNGT	2 cut(s)	139, 328
HpyCH4IV	ACGT	2 cut(s)	186, 305
HpyCH4V	TGCA	6 cut(s)	23, 34, 413, 497, 543, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	1 cut(s)	262
HpySE526I	ACGT	2 cut(s)	186, 305
Hsp92II	CATG	2 cut(s)	232, 538
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	108, 252
LpnPI	CCDG	5 cut(s)	71, 151, 235, 256, 405
Lsp1109I	GCAGC	2 cut(s)	459, 575
LweI	GCATC	2 cut(s)	10, 561
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	2 cut(s)	186, 305
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	110, 254
MboI	GATC	2 cut(s)	108, 252
MboII	GAAGA	4 cut(s)	73, 526, 529, 532
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	5 cut(s)	233, 289, 336, 440, 498
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	2 cut(s)	49, 385
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MslI	CAYNNNNRTG	2 cut(s)	125, 140
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	593
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	444
NdeII	GATC	2 cut(s)	108, 252
NlaIII	CATG	2 cut(s)	232, 538
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	301
PctI	GAATGC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	26, 200
PkrI	GCNGC	3 cut(s)	176, 449, 565
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	125, 140
SatI	GCNGC	3 cut(s)	175, 448, 564
Sau3AI	GATC	2 cut(s)	108, 252
SchI	GAGTC	1 cut(s)	139
SetI	ASST	7 cut(s)	51, 189, 197, 308, 360, 396, 553
SfaNI	GCATC	2 cut(s)	10, 561
SmiMI	CAYNNNNRTG	2 cut(s)	125, 140
Sse9I	AATT	5 cut(s)	233, 289, 336, 440, 498
SsiI	CCGC	3 cut(s)	123, 174, 450
SspMI	CTAG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	139, 328
TaiI	ACGT	2 cut(s)	189, 308
TaqI	TCGA	2 cut(s)	225, 371
TasI	AATT	5 cut(s)	233, 289, 336, 440, 498
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	26, 200
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	2 cut(s)	447, 563
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	6 cut(s)	158, 210, 245, 496, 527, 551
TspRI	CASTG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	233
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.