Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012668

Physical Location & Seq

Genomic Coordinates Reverse (-)

11450360 .. 11451417

Gene Structure 1058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G109500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTGAGAAGGCTTATCCTGCAGCCCCGGCAAACCATGGTTACCAAAGAAGTGATGCAGAGTCTTTGGAAAATGCTGATGAGCTGAAACGCAAGAAGAAAATCAAATTGGCCATATATATTACTATTTTCGTTGTGTTTCAGATCATAGTTATCACCACAATGAGTCTCACTGTCATGAAAGTGAAAACCCCCAGGTTCAGGCTAGGCAACATCAATGTCGAAAGCTTCGTATCTGACTCGGCAGCGCCTTCATTCGACACGAAATTCACAACCCAAATCAAGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAATGCTGCCAATATCACGTTTCAACACCAAGGAGCCACTCTGGCAGTAATTGATATCGCAAAGGGCAAGGCTGGATGGCTTTCGACCATAAAAAGAAATGCGGAGGTGAGTTTGAATTCAAATGCAATAACTGGTTCAAACTTTGAAAGTGAATTGAGGAGCGGGGTGTTGACGCTCAACAGCGTAGGAAGATTGAACGGAAAAGTTGCAATTATGTTCATCATGAAGAAGAAGAAGGCCGCCAACATGAACTGCACCATAGCTTTTGATGTGGCAGCCAAGAACGTCAAATCTTTACACTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

210

Amino Acids

22.94

Weight (kDa)

9.98

Isoelectric Point (pI)

27.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012668)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Species

Orthologous Gene IDs

prunus_persica

Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	483
AciI	CCGC	3 cut(s)	422, 483, 561
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	266, 436
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	7 cut(s)	322, 344, 436, 441, 459, 467, 517
AjnI	CCWGG	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	3 cut(s)	85, 228, 584
AluI	AGCT	3 cut(s)	85, 228, 584
Alw26I	GTCTC	1 cut(s)	173
AoxI	GGCC	2 cut(s)	111, 558
ApeKI	GCWGC	4 cut(s)	23, 245, 326, 596
ApoI	RAATTY	2 cut(s)	266, 436
AspLEI	GCGC	1 cut(s)	250
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	148, 439
BalI	TGGCCA	1 cut(s)	113
BbvI	GCAGC	4 cut(s)	35, 257, 313, 608
BccI	CCATC	1 cut(s)	390
BciT130I	CCWGG	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	251
BglI	GCCNNNNNGGC	1 cut(s)	362
BisI	GCNGC	5 cut(s)	24, 246, 327, 561, 597
BlsI	GCNGC	5 cut(s)	25, 247, 328, 562, 598
Bme1390I	CCNGG	2 cut(s)	29, 196
BmiI	GGNNCC	2 cut(s)	310, 355
BmrFI	CCNGG	2 cut(s)	29, 196
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	313
BpuMI	CCSGG	1 cut(s)	29
BsaJI	CCNNGG	4 cut(s)	27, 37, 194, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	2 cut(s)	308, 457
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	4 cut(s)	27, 37, 194, 349
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	308, 457
BseRI	GAGGAG	1 cut(s)	493
BseXI	GCAGC	4 cut(s)	35, 257, 313, 608
BsgI	GTGCAG	1 cut(s)	559
BshFI	GGCC	2 cut(s)	113, 560
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	113, 560
Bsp143I	GATC	2 cut(s)	144, 285
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	3 cut(s)	422, 483, 561
BspANI	GGCC	2 cut(s)	113, 560
BspCNI	CTCAG	1 cut(s)	308
BspHI	TCATGA	2 cut(s)	177, 543
BspLI	GGNNCC	2 cut(s)	310, 355
BspMAI	CTGCAG	1 cut(s)	25
BsrBI	CCGCTC	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	308, 457
BssECI	CCNNGG	4 cut(s)	27, 37, 194, 349
BssMI	GATC	2 cut(s)	144, 285
BssT1I	CCWWGG	2 cut(s)	37, 349
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	6, 295
BstDSI	CCRYGG	1 cut(s)	37
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	401
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	2 cut(s)	147, 288
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	2 cut(s)	144, 285
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 29, 362
BstNI	CCWGG	1 cut(s)	196
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	27, 194
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	4 cut(s)	35, 257, 313, 608
BsuRI	GGCC	2 cut(s)	113, 560
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	401
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	2 cut(s)	171, 619
CciI	TCATGA	2 cut(s)	177, 543
CfoI	GCGC	1 cut(s)	250
CseI	GACGC	1 cut(s)	502
CviAII	CATG	4 cut(s)	38, 178, 544, 568
DdeI	CTNAG	2 cut(s)	6, 295
DpnI	GATC	2 cut(s)	146, 287
DpnII	GATC	2 cut(s)	144, 285
EaeI	YGGCCR	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	37, 349
Eco32I	GATATC	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	194
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	37, 349
ErhI	CCWWGG	2 cut(s)	37, 349
FaeI	CATG	4 cut(s)	41, 181, 547, 571
FatI	CATG	4 cut(s)	37, 177, 543, 567
FauI	CCCGC	1 cut(s)	476
Fnu4HI	GCNGC	5 cut(s)	24, 246, 327, 561, 597
FokI	GGATG	1 cut(s)	408
Fsp4HI	GCNGC	5 cut(s)	24, 246, 327, 561, 597
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	5 cut(s)	24, 246, 327, 561, 597
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	113, 560
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	502
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	4 cut(s)	41, 181, 547, 571
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	3 cut(s)	62, 166, 239
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	2 cut(s)	148, 439
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	2 cut(s)	144, 238
Hpy188III	TCNNGA	4 cut(s)	178, 283, 289, 544
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	3 cut(s)	4, 261, 550
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	338, 606
HpyCH4V	TGCA	6 cut(s)	23, 59, 446, 530, 576, 624
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 29, 362
HpyF3I	CTNAG	2 cut(s)	6, 295
HpySE526I	ACGT	2 cut(s)	338, 606
Hsp92II	CATG	4 cut(s)	41, 181, 547, 571
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	144, 285
LmnI	GCTCC	2 cut(s)	353, 480
LpnPI	CCDG	9 cut(s)	33, 42, 181, 187, 208, 289, 347, 378, 438
Lsp1109I	GCAGC	4 cut(s)	35, 257, 313, 608
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	2 cut(s)	338, 606
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	146, 287
MbiI	CCGCTC	1 cut(s)	483
MboI	GATC	2 cut(s)	144, 285
MboII	GAAGA	5 cut(s)	109, 522, 559, 562, 565
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	6 cut(s)	107, 266, 369, 436, 473, 531
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	3 cut(s)	71, 175, 233
MnlI	CCTC	2 cut(s)	418, 471
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MslI	CAYNNNNRTG	3 cut(s)	161, 176, 182
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	29, 196
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 29, 362
NciI	CCSGG	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	2 cut(s)	144, 285
NlaIII	CATG	4 cut(s)	41, 181, 547, 571
NlaIV	GGNNCC	2 cut(s)	310, 355
NmeAIII	GCCGAG	1 cut(s)	221
PagI	TCATGA	2 cut(s)	177, 543
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PkrI	GCNGC	5 cut(s)	25, 247, 328, 562, 598
PleI	GAGTC	3 cut(s)	70, 174, 233
PpsI	GAGTC	3 cut(s)	70, 174, 233
Psp6I	CCWGG	1 cut(s)	194
PspEI	GGTNACC	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	310, 355
PstI	CTGCAG	1 cut(s)	25
RseI	CAYNNNNRTG	3 cut(s)	161, 176, 182
SatI	GCNGC	5 cut(s)	24, 246, 327, 561, 597
Sau3AI	GATC	2 cut(s)	144, 285
SchI	GAGTC	3 cut(s)	71, 175, 233
ScrFI	CCNGG	2 cut(s)	29, 196
SetI	ASST	7 cut(s)	87, 200, 230, 341, 429, 586, 609
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	3 cut(s)	161, 176, 182
Sse9I	AATT	6 cut(s)	107, 266, 369, 436, 473, 531
SsiI	CCGC	3 cut(s)	422, 483, 561
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	27, 194
StyI	CCWWGG	2 cut(s)	37, 349
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	2 cut(s)	341, 609
TaqI	TCGA	3 cut(s)	222, 258, 404
TasI	AATT	6 cut(s)	107, 266, 369, 436, 473, 531
TauI	GCSGC	1 cut(s)	563
TscAI	CASTG	2 cut(s)	178, 626
TseI	GCWGC	4 cut(s)	23, 245, 326, 596
TspDTI	ATGAA	5 cut(s)	194, 243, 529, 560, 584
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	2 cut(s)	178, 626
XapI	RAATTY	2 cut(s)	266, 436
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.