Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012668

Physical Location & Seq

Genomic Coordinates Reverse (-)

11428888 .. 11429421

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G109000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCCGCTGATGAGCTGAAACGCAAGAAGAAAATCAAATTGGCCATCTATATTAGTATTTTCGTTGTGTTTCAGATCATAGTTATCACCACAATGAGTCTCACTGTCATGAAAGTTAAGACCCCAAAGTTCAGGCTAGGCGACATCAAAGTCCAAAGCTTGGAATCAACGCCTTCATTCGACTTGAAATTCACAACCCAAATCAGGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAAAGCTGGAAATGTCACGTTTCAACACCAAGGCCAGACTGTGGGAGCAATTGATATCGCAAAGGGCAAGGTTGGATGGCTTTCGACCGTAAAAAGAAATGCGAATGTGAGTTTGAATTCAAATGCAATAACCGAATTGGGCAGCGGGGTCTTGACGCTCAATAGCGTTGGTAGATTGGAAGGAAAAGTTGCAATTATGTTCATAATGAAGAAGAAGAAGGCTACCAACATGAACTGCACCATAGCTTTTGATGTGACTGCCAAGACCCTCCAATCTTTACACTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

178

Amino Acids

19.56

Weight (kDa)

10.25

Isoelectric Point (pI)

19.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012668)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Species

Orthologous Gene IDs

prunus_persica

Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AccB7I	CCANNNNNTGG	2 cut(s)	160, 283
AciI	CCGC	2 cut(s)	6, 387
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	188, 358
AfiI	CCNNNNNNNGG	3 cut(s)	160, 204, 283
AgsI	TTSAA	5 cut(s)	187, 244, 266, 358, 363
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	4 cut(s)	16, 159, 248, 488
AluI	AGCT	4 cut(s)	16, 159, 248, 488
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	42, 274
ApeKI	GCWGC	1 cut(s)	384
ApoI	RAATTY	2 cut(s)	188, 358
AsuHPI	GGTGA	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	2 cut(s)	53, 312
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	385
BlsI	GCNGC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 204, 283
Bse1I	ACTGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	323
BseLI	CCNNNNNNNGG	3 cut(s)	160, 204, 283
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	396
BsgI	GTGCAG	1 cut(s)	463
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	44, 276
BsiEI	CGRYCG	1 cut(s)	330
BslI	CCNNNNNNNGG	3 cut(s)	160, 204, 283
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	44, 276
Bsp143I	GATC	2 cut(s)	75, 207
BspACI	CCGC	2 cut(s)	6, 387
BspANI	GGCC	2 cut(s)	44, 276
BspCNI	CTCAG	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	2 cut(s)	75, 207
BssT1I	CCWWGG	1 cut(s)	271
Bst4CI	ACNGT	3 cut(s)	106, 283, 331
BstDEI	CTNAG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	323
BstKTI	GATC	2 cut(s)	78, 210
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	75, 207
BstMCI	CGRYCG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	44, 276
BtsCI	GGATG	1 cut(s)	323
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	102, 523
CciI	TCATGA	1 cut(s)	108
CseI	GACGC	1 cut(s)	406
CviAII	CATG	2 cut(s)	109, 472
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	2 cut(s)	77, 209
DpnII	GATC	2 cut(s)	75, 207
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	271
Eco32I	GATATC	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	112, 475
FaiI	YATR	7 cut(s)	51, 80, 110, 440, 446, 473, 485
FatI	CATG	2 cut(s)	108, 471
FauI	CCCGC	1 cut(s)	380
Fnu4HI	GCNGC	1 cut(s)	385
FokI	GGATG	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	385
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	385
HaeIII	GGCC	2 cut(s)	44, 276
HgaI	GACGC	1 cut(s)	406
Hin1II	CATG	2 cut(s)	112, 475
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	2 cut(s)	97, 164
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	4 cut(s)	109, 205, 211, 394
HpyAV	CCTTC	3 cut(s)	183, 416, 454
HpyCH4III	ACNGT	3 cut(s)	106, 283, 331
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	4 cut(s)	368, 434, 480, 528
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	112, 475
Kzo9I	GATC	2 cut(s)	75, 207
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	5 cut(s)	118, 190, 211, 234, 290
Lsp1109I	GCAGC	1 cut(s)	396
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	2 cut(s)	256, 496
MalI	GATC	2 cut(s)	77, 209
MboI	GATC	2 cut(s)	75, 207
MboII	GAAGA	4 cut(s)	40, 463, 466, 469
MfeI	CAATTG	1 cut(s)	291
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	6 cut(s)	38, 188, 291, 358, 377, 435
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	1 cut(s)	521
Mox20I	TGGCCA	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	2 cut(s)	92, 107
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	2 cut(s)	8, 387
MunI	CAATTG	1 cut(s)	291
NdeII	GATC	2 cut(s)	75, 207
NlaIII	CATG	2 cut(s)	112, 475
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	2 cut(s)	256, 496
PagI	TCATGA	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	164
PflMI	CCANNNNNTGG	2 cut(s)	160, 283
PkrI	GCNGC	1 cut(s)	386
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	232
RseI	CAYNNNNRTG	2 cut(s)	92, 107
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	385
Sau3AI	GATC	2 cut(s)	75, 207
SchI	GAGTC	1 cut(s)	106
SetI	ASST	6 cut(s)	18, 161, 250, 263, 315, 490
SmiMI	CAYNNNNRTG	2 cut(s)	92, 107
Sse9I	AATT	6 cut(s)	38, 188, 291, 358, 377, 435
SsiI	CCGC	2 cut(s)	6, 387
SspMI	CTAG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	106, 283, 331
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	180, 326
TasI	AATT	6 cut(s)	38, 188, 291, 358, 377, 435
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	109, 530
TseFI	GTSAC	2 cut(s)	256, 496
TseI	GCWGC	1 cut(s)	384
Tsp45I	GTSAC	2 cut(s)	256, 496
TspDTI	ATGAA	5 cut(s)	125, 165, 433, 464, 488
TspRI	CASTG	2 cut(s)	109, 530
Van91I	CCANNNNNTGG	2 cut(s)	160, 283
XapI	RAATTY	2 cut(s)	188, 358
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.