Prupe.5G109600_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012668
Physical Location & Seq
Forward (+)
11451483 .. 11458041
6559 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G109600.1

Sequence Viewer

Length: 1251 bp
ATGGGGGTGGAAATCAACTTCCTGGAAATTGTGAGTTTCAGCAGAAGAGATTATTTGCAGACGCCAAACGCGTCCAAAGCCAAAGTTTCATCCACAAAACCAAACCAACTACAAAAGCAGAGAACTTTTGTTTTCCAACTTTTTTATCGGAAAAGAAAAGGAAACATGGCTTGGAAAACAAGTGATGCGGAGTCTTTGAGATCCTCTGATGAGCAGAAACGCAAGAAGAAAATCAAATTGGCCATATATATTACTATTTTTGTTGTGTTTCAGATCATCGTTATCACCACAATGAGTCTCACTGTGATGAAAGTTAAGACCCCCAGGTTCAGGCTAGGCAACATCAATGTCGAAAGCTTCGTATCTGACTCGGCAGCGCCTTCATTCGACACGAAATTCACAACCCAAATCAAGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAATGCTGCCAATATCACGTTTCAACACCAAGGAGCGACTCTGGCAGTAATTGATATCGCAAAGGGCAAGGCTGGATGGCTTTCGACCATAAAAAGAAATGCGGAGGTGAGTTTGAATTCAAATGCAATAACTGGTTCAAACTTTGAAAGTGAATTGAGGAGCGGGGTGTTGACGCTCAACAGCGTAGGAAGATTGAACGGAAAAGTTGCAATTATGTTCATCATGAAGAAGAAGAAGGCCGCCAACATGAACTGCACCATAGCTCTTGATAAAATCAAATTGGCCATATATATTACTATTTTTGTTGTGTTTCAGATCATCGTTATCACCACAATGAGTCTCACTGTGATGAAAGTGAAAACCCCCAGGTTCAGGCTTGGCAACATCAATGTCGAAAGCTTCGTATCTGACTCGGCAGCGCCTTCATTCGACACGAAATTCACAACCCAAATCAAGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAATGCTGCCAATATCACGTTTCAACACCAAGGAGCGACTCTGGCAGTAATTGATATCGCAAAGGGCAAGGCTGGATGGCTTTCGACCATAAAAAGAAATGCGGAGGTGAGTTTGAATTCAAATGCAATAACTGGTTCAAACTTTGAAAGTGAATTGAGGAGCGGGGTGTTGACGCTCAACAGCGTAGGAAGATTGAACGGAAAAGTTGCAATTATGTTCATCATGAAGAAGAAGAAGGCCGCCAACATGAACTGCACCATAGCTTTTGATGTGGCAGCCAAAAACGTCAAATCTTTACACTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

417

Amino Acids

46.15

Weight (kDa)

10.33

Isoelectric Point (pI)

29.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 612, 1104
AccII CGCG 1 cut(s) 71
AciI CCGC 7 cut(s) 188, 551, 612, 690, 1043, 1104, 1182
AclWI GGATC 1 cut(s) 195
AcoI YGGCCR 2 cut(s) 240, 732
AcsI RAATTY 4 cut(s) 395, 565, 887, 1057
AcyI GRCGYC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 330, 822
AflIII ACRYGT 1 cut(s) 69
AjnI CCWGG 3 cut(s) 21, 323, 815
AjuI GAANNNNNNNTTGG 4 cut(s) 154, 186, 221, 253
AluBI AGCT 4 cut(s) 357, 713, 849, 1205
AluI AGCT 4 cut(s) 357, 713, 849, 1205
Alw26I GTCTC 2 cut(s) 302, 794
AlwI GGATC 1 cut(s) 195
AoxI GGCC 4 cut(s) 240, 687, 732, 1179
ApeKI GCWGC 5 cut(s) 374, 455, 866, 947, 1217
ApoI RAATTY 4 cut(s) 395, 565, 887, 1057
AspLEI GCGC 2 cut(s) 379, 871
AsuHPI GGTGA 4 cut(s) 277, 568, 769, 1060
BalI TGGCCA 2 cut(s) 242, 734
BbvI GCAGC 5 cut(s) 386, 442, 878, 934, 1229
BccI CCATC 2 cut(s) 519, 1011
BciT130I CCWGG 3 cut(s) 23, 325, 817
BcoDI GTCTC 2 cut(s) 302, 794
BfaI CTAG 1 cut(s) 335
BfoI RGCGCY 2 cut(s) 380, 872
BisI GCNGC 7 cut(s) 375, 456, 690, 867, 948, 1182, 1218
BlsI GCNGC 7 cut(s) 376, 457, 691, 868, 949, 1183, 1219
Bme1390I CCNGG 3 cut(s) 23, 325, 817
BmiI GGNNCC 2 cut(s) 439, 931
BmrFI CCNGG 3 cut(s) 23, 325, 817
BmrI ACTGGG 2 cut(s) 442, 934
BmsI GCATC 1 cut(s) 175
BmuI ACTGGG 2 cut(s) 442, 934
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 4 cut(s) 323, 478, 815, 970
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 822
Bse1I ACTGG 4 cut(s) 437, 586, 929, 1078
BseBI CCWGG 3 cut(s) 23, 325, 817
BseDI CCNNGG 4 cut(s) 323, 478, 815, 970
BseGI GGATG 3 cut(s) 89, 530, 1022
BseLI CCNNNNNNNGG 2 cut(s) 330, 822
BseMII CTCAG 2 cut(s) 438, 930
BseNI ACTGG 4 cut(s) 437, 586, 929, 1078
BseRI GAGGAG 2 cut(s) 622, 1114
BseXI GCAGC 5 cut(s) 386, 442, 878, 934, 1229
BsgI GTGCAG 2 cut(s) 688, 1180
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 4 cut(s) 242, 689, 734, 1181
BslI CCNNNNNNNGG 2 cut(s) 330, 822
BsmAI GTCTC 2 cut(s) 302, 794
BsnI GGCC 4 cut(s) 242, 689, 734, 1181
Bsp143I GATC 5 cut(s) 200, 273, 414, 765, 906
BspACI CCGC 7 cut(s) 188, 551, 612, 690, 1043, 1104, 1182
BspANI GGCC 4 cut(s) 242, 689, 734, 1181
BspCNI CTCAG 2 cut(s) 437, 929
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 2 cut(s) 672, 1164
BspLI GGNNCC 2 cut(s) 439, 931
BspPI GGATC 1 cut(s) 195
BsrBI CCGCTC 2 cut(s) 612, 1104
BsrI ACTGG 4 cut(s) 437, 586, 929, 1078
BssECI CCNNGG 4 cut(s) 323, 478, 815, 970
BssMI GATC 5 cut(s) 200, 273, 414, 765, 906
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 2 cut(s) 478, 970
Bst2UI CCWGG 3 cut(s) 23, 325, 817
Bst4CI ACNGT 2 cut(s) 304, 796
Bst6I CTCTTC 1 cut(s) 40
BstACI GRCGYC 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 424, 916
BstF5I GGATG 3 cut(s) 89, 530, 1022
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 2 cut(s) 380, 872
BstHHI GCGC 2 cut(s) 379, 871
BstKTI GATC 5 cut(s) 203, 276, 417, 768, 909
BstMAI GTCTC 2 cut(s) 302, 794
BstMBI GATC 5 cut(s) 200, 273, 414, 765, 906
BstMWI GCNNNNNNNGC 3 cut(s) 77, 491, 983
BstNI CCWGG 3 cut(s) 23, 325, 817
BstSCI CCNGG 3 cut(s) 21, 323, 815
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 5 cut(s) 386, 442, 878, 934, 1229
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BsuRI GGCC 4 cut(s) 242, 689, 734, 1181
BtsCI GGATG 3 cut(s) 89, 530, 1022
BtsI GCAGTG 1 cut(s) 1240
BtsIMutI CAGTG 3 cut(s) 300, 792, 1240
CciI TCATGA 2 cut(s) 672, 1164
CfoI GCGC 2 cut(s) 379, 871
CseI GACGC 4 cut(s) 60, 70, 631, 1123
CviAII CATG 5 cut(s) 166, 673, 697, 1165, 1189
DdeI CTNAG 2 cut(s) 424, 916
DpnI GATC 5 cut(s) 202, 275, 416, 767, 908
DpnII GATC 5 cut(s) 200, 273, 414, 765, 906
EaeI YGGCCR 2 cut(s) 240, 732
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 478, 970
Eco32I GATATC 2 cut(s) 505, 997
EcoRI GAATTC 2 cut(s) 565, 1057
EcoRII CCWGG 3 cut(s) 21, 323, 815
EcoRV GATATC 2 cut(s) 505, 997
EcoT14I CCWWGG 2 cut(s) 478, 970
ErhI CCWWGG 2 cut(s) 478, 970
FaeI CATG 5 cut(s) 169, 676, 700, 1168, 1192
FatI CATG 5 cut(s) 165, 672, 696, 1164, 1188
FauI CCCGC 2 cut(s) 605, 1097
Fnu4HI GCNGC 7 cut(s) 375, 456, 690, 867, 948, 1182, 1218
FokI GGATG 3 cut(s) 76, 537, 1029
Fsp4HI GCNGC 7 cut(s) 375, 456, 690, 867, 948, 1182, 1218
FspBI CTAG 1 cut(s) 335
GlaI GCGC 2 cut(s) 378, 870
GluI GCNGC 7 cut(s) 375, 456, 690, 867, 948, 1182, 1218
HaeII RGCGCY 2 cut(s) 380, 872
HaeIII GGCC 4 cut(s) 242, 689, 734, 1181
HgaI GACGC 4 cut(s) 60, 70, 631, 1123
HhaI GCGC 2 cut(s) 379, 871
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 5 cut(s) 169, 676, 700, 1168, 1192
Hin6I GCGC 2 cut(s) 377, 869
HinP1I GCGC 2 cut(s) 377, 869
HincII GTYRAC 2 cut(s) 621, 1113
HindII GTYRAC 2 cut(s) 621, 1113
HindIII AAGCTT 2 cut(s) 355, 847
HinfI GANTC 7 cut(s) 191, 295, 368, 487, 787, 860, 979
HphI GGTGA 4 cut(s) 277, 568, 769, 1060
Hpy166II GTNNAC 2 cut(s) 621, 1113
Hpy188I TCNGA 6 cut(s) 150, 208, 273, 367, 765, 859
Hpy188III TCNNGA 7 cut(s) 412, 418, 673, 716, 904, 910, 1165
Hpy8I GTNNAC 2 cut(s) 621, 1113
HpyAV CCTTC 4 cut(s) 390, 679, 882, 1171
HpyCH4III ACNGT 2 cut(s) 304, 796
HpyCH4IV ACGT 3 cut(s) 467, 959, 1227
HpyCH4V TGCA 8 cut(s) 58, 575, 659, 705, 1067, 1151, 1197, 1245
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 491, 983
HpyF3I CTNAG 2 cut(s) 424, 916
HpySE526I ACGT 3 cut(s) 467, 959, 1227
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 5 cut(s) 169, 676, 700, 1168, 1192
HspAI GCGC 2 cut(s) 377, 869
Kzo9I GATC 5 cut(s) 200, 273, 414, 765, 906
LmnI GCTCC 4 cut(s) 482, 609, 974, 1101
Lsp1109I GCAGC 5 cut(s) 386, 442, 878, 934, 1229
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 335
MaeII ACGT 3 cut(s) 467, 959, 1227
MalI GATC 5 cut(s) 202, 275, 416, 767, 908
MbiI CCGCTC 2 cut(s) 612, 1104
MboI GATC 5 cut(s) 200, 273, 414, 765, 906
MflI RGATCY 1 cut(s) 200
MlsI TGGCCA 2 cut(s) 242, 734
MluI ACGCGT 1 cut(s) 69
MluNI TGGCCA 2 cut(s) 242, 734
MlyI GAGTC 7 cut(s) 200, 304, 362, 481, 796, 854, 973
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 5 cut(s) 214, 547, 600, 1039, 1092
Mox20I TGGCCA 2 cut(s) 242, 734
MscI TGGCCA 2 cut(s) 242, 734
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 4 cut(s) 290, 305, 782, 797
Msp20I TGGCCA 2 cut(s) 242, 734
MspR9I CCNGG 3 cut(s) 23, 325, 817
MvaI CCWGG 3 cut(s) 23, 325, 817
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 3 cut(s) 77, 491, 983
NdeII GATC 5 cut(s) 200, 273, 414, 765, 906
NlaIII CATG 5 cut(s) 169, 676, 700, 1168, 1192
NlaIV GGNNCC 2 cut(s) 439, 931
NmeAIII GCCGAG 2 cut(s) 350, 842
PagI TCATGA 2 cut(s) 672, 1164
PcsI WCGNNNNNNNCGW 3 cut(s) 68, 357, 849
PfoI TCCNGGA 1 cut(s) 21
PkrI GCNGC 7 cut(s) 376, 457, 691, 868, 949, 1183, 1219
PleI GAGTC 7 cut(s) 199, 303, 362, 481, 795, 854, 973
PpsI GAGTC 7 cut(s) 199, 303, 362, 481, 795, 854, 973
Psp6I CCWGG 3 cut(s) 21, 323, 815
PspGI CCWGG 3 cut(s) 21, 323, 815
PspN4I GGNNCC 2 cut(s) 439, 931
PsuI RGATCY 1 cut(s) 200
RseI CAYNNNNRTG 4 cut(s) 290, 305, 782, 797
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 7 cut(s) 375, 456, 690, 867, 948, 1182, 1218
Sau3AI GATC 5 cut(s) 200, 273, 414, 765, 906
SchI GAGTC 7 cut(s) 200, 304, 362, 481, 796, 854, 973
ScrFI CCNGG 3 cut(s) 23, 325, 817
SfaNI GCATC 1 cut(s) 175
SmiMI CAYNNNNRTG 4 cut(s) 290, 305, 782, 797
SsiI CCGC 7 cut(s) 188, 551, 612, 690, 1043, 1104, 1182
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 3 cut(s) 21, 323, 815
StyI CCWWGG 2 cut(s) 478, 970
TaaI ACNGT 2 cut(s) 304, 796
TaiI ACGT 3 cut(s) 470, 962, 1230
TaqI TCGA 6 cut(s) 351, 387, 533, 843, 879, 1025
TauI GCSGC 2 cut(s) 692, 1184
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 3 cut(s) 307, 799, 1247
TseI GCWGC 5 cut(s) 374, 455, 866, 947, 1217
TspGWI ACGGA 2 cut(s) 663, 1155
TspRI CASTG 3 cut(s) 307, 799, 1247
XapI RAATTY 4 cut(s) 395, 565, 887, 1057
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.