Prupe.5G109100_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012668
Physical Location & Seq
Reverse (-)
11431581 .. 11432216
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G109100.1

Sequence Viewer

Length: 636 bp
ATGGCAGAGAAAACCAACCCGGCCTATCCCTTGGCACCGTCAAATGGTTACACAAGAAGTGATGGAGAGTCTCAGCTGTCCGCTGATGAGCTGAAACGCAAGAAGAAAATCAAATTGGCCATCTATATTACTATTTTCGTTGTGTTTCAGATCATAGTTATCACCACAATGAGTCTCACTGTCATGAAAGTGAAAACCCCCAGGTTTAGGCTAGGCAACATCAATGTCGAAAGCTTCGTATCTGACTCGGCAGCGCCTTCATTCGACACGAAATTCACAACCCAAATCAAGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAATGCTGCCAATATCACGTTTCAACACCAAGGCGCGACTCTGGCAGTAATTGATATCGCAAAGGGCAAGGCTGGATGGCTTTCGACCATAAAAAGAAATGCAGAGGTGAGTTTGAAGTCAAGTGCAATAAATGGTTCAAACTTTGGAAGTGAATTGAGAAGCGGGGTGTTGACGCTCAACAGCGTAGGAAGATTGAACGGAAAAGTTGCAATTATGTTCATCATGAAGAAGAAGAAGGCCGCCAACATGAACTGCACCATAGCTTTTGATGTGGCAGCCAAGAACGTCAAATCTTTACACTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

212

Amino Acids

23.03

Weight (kDa)

10.13

Isoelectric Point (pI)

25.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AccII CGCG 1 cut(s) 362
AciI CCGC 3 cut(s) 81, 489, 567
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 44, 207
AgsI TTSAA 5 cut(s) 328, 350, 442, 465, 523
AjnI CCWGG 1 cut(s) 200
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 4 cut(s) 76, 91, 234, 590
AluI AGCT 4 cut(s) 76, 91, 234, 590
Alw26I GTCTC 2 cut(s) 75, 179
AoxI GGCC 3 cut(s) 21, 117, 564
ApeKI GCWGC 3 cut(s) 251, 332, 602
ApoI RAATTY 1 cut(s) 272
AspLEI GCGC 2 cut(s) 256, 362
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 154, 445
BalI TGGCCA 1 cut(s) 119
BanI GGYRCC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 263, 319, 614
BccI CCATC 3 cut(s) 56, 128, 396
BciT130I CCWGG 1 cut(s) 202
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 75, 179
BfaI CTAG 1 cut(s) 212
BfoI RGCGCY 1 cut(s) 257
BisI GCNGC 4 cut(s) 252, 333, 567, 603
BlsI GCNGC 4 cut(s) 253, 334, 568, 604
Bme1390I CCNGG 2 cut(s) 20, 202
BmiI GGNNCC 2 cut(s) 36, 316
BmrFI CCNGG 2 cut(s) 20, 202
BmrI ACTGGG 1 cut(s) 319
BmuI ACTGGG 1 cut(s) 319
BpuMI CCSGG 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 30, 200, 355
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 207
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 3 cut(s) 30, 200, 355
BseGI GGATG 1 cut(s) 407
BseLI CCNNNNNNNGG 2 cut(s) 44, 207
BseMII CTCAG 2 cut(s) 86, 315
BseNI ACTGG 1 cut(s) 314
BseXI GCAGC 3 cut(s) 263, 319, 614
BsgI GTGCAG 1 cut(s) 565
Bsh1236I CGCG 1 cut(s) 362
BshFI GGCC 3 cut(s) 23, 119, 566
BshNI GGYRCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 44, 207
BsmAI GTCTC 2 cut(s) 75, 179
BsnI GGCC 3 cut(s) 23, 119, 566
Bsp143I GATC 2 cut(s) 150, 291
BspACI CCGC 3 cut(s) 81, 489, 567
BspANI GGCC 3 cut(s) 23, 119, 566
BspCNI CTCAG 2 cut(s) 85, 314
BspFNI CGCG 1 cut(s) 362
BspHI TCATGA 2 cut(s) 183, 549
BspLI GGNNCC 2 cut(s) 36, 316
BspT107I GGYRCC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 30, 200, 355
BssMI GATC 2 cut(s) 150, 291
BssT1I CCWWGG 2 cut(s) 30, 355
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 39, 181
BstDEI CTNAG 2 cut(s) 72, 301
BstF5I GGATG 1 cut(s) 407
BstFNI CGCG 1 cut(s) 362
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 2 cut(s) 256, 362
BstKTI GATC 2 cut(s) 153, 294
BstMAI GTCTC 2 cut(s) 75, 179
BstMBI GATC 2 cut(s) 150, 291
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 2 cut(s) 18, 200
BstUI CGCG 1 cut(s) 362
BstV1I GCAGC 3 cut(s) 263, 319, 614
BsuRI GGCC 3 cut(s) 23, 119, 566
BtsCI GGATG 1 cut(s) 407
BtsI GCAGTG 1 cut(s) 625
BtsIMutI CAGTG 2 cut(s) 177, 625
CciI TCATGA 2 cut(s) 183, 549
CfoI GCGC 2 cut(s) 256, 362
CseI GACGC 1 cut(s) 508
CviAII CATG 3 cut(s) 184, 550, 574
DdeI CTNAG 2 cut(s) 72, 301
DpnI GATC 2 cut(s) 152, 293
DpnII GATC 2 cut(s) 150, 291
EaeI YGGCCR 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 30, 355
Eco32I GATATC 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 200
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 30, 355
ErhI CCWWGG 2 cut(s) 30, 355
FaeI CATG 3 cut(s) 187, 553, 577
FaiI YATR 8 cut(s) 126, 155, 185, 416, 542, 551, 575, 587
FatI CATG 3 cut(s) 183, 549, 573
FauI CCCGC 1 cut(s) 482
Fnu4HI GCNGC 4 cut(s) 252, 333, 567, 603
FokI GGATG 1 cut(s) 414
Fsp4HI GCNGC 4 cut(s) 252, 333, 567, 603
FspBI CTAG 1 cut(s) 212
GlaI GCGC 2 cut(s) 255, 361
GluI GCNGC 4 cut(s) 252, 333, 567, 603
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 3 cut(s) 23, 119, 566
HapII CCGG 1 cut(s) 20
HgaI GACGC 1 cut(s) 508
HhaI GCGC 2 cut(s) 256, 362
Hin1II CATG 3 cut(s) 187, 553, 577
Hin6I GCGC 2 cut(s) 254, 360
HinP1I GCGC 2 cut(s) 254, 360
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HindIII AAGCTT 1 cut(s) 232
HinfI GANTC 4 cut(s) 68, 172, 245, 364
HpaII CCGG 1 cut(s) 20
HphI GGTGA 2 cut(s) 154, 445
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 2 cut(s) 150, 244
Hpy188III TCNNGA 4 cut(s) 184, 289, 295, 550
Hpy8I GTNNAC 1 cut(s) 498
HpyAV CCTTC 2 cut(s) 267, 556
HpyCH4III ACNGT 2 cut(s) 39, 181
HpyCH4IV ACGT 2 cut(s) 344, 612
HpyCH4V TGCA 5 cut(s) 428, 452, 536, 582, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 2 cut(s) 72, 301
HpySE526I ACGT 2 cut(s) 344, 612
Hsp92II CATG 3 cut(s) 187, 553, 577
HspAI GCGC 2 cut(s) 254, 360
Kzo9I GATC 2 cut(s) 150, 291
LpnPI CCDG 6 cut(s) 33, 187, 214, 295, 353, 384
Lsp1109I GCAGC 3 cut(s) 263, 319, 614
MaeI CTAG 1 cut(s) 212
MaeII ACGT 2 cut(s) 344, 612
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 152, 293
MboI GATC 2 cut(s) 150, 291
MboII GAAGA 5 cut(s) 115, 528, 565, 568, 571
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 5 cut(s) 113, 272, 375, 479, 537
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 4 cut(s) 77, 181, 239, 358
MnlI CCTC 1 cut(s) 424
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
MslI CAYNNNNRTG 3 cut(s) 167, 182, 188
Msp20I TGGCCA 1 cut(s) 119
MspA1I CMGCKG 2 cut(s) 76, 83
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 20, 202
MvaI CCWGG 1 cut(s) 202
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 368
NciI CCSGG 1 cut(s) 20
NdeII GATC 2 cut(s) 150, 291
NlaIII CATG 3 cut(s) 187, 553, 577
NlaIV GGNNCC 2 cut(s) 36, 316
NmeAIII GCCGAG 1 cut(s) 227
PagI TCATGA 2 cut(s) 183, 549
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PkrI GCNGC 4 cut(s) 253, 334, 568, 604
PleI GAGTC 4 cut(s) 76, 180, 239, 358
PpsI GAGTC 4 cut(s) 76, 180, 239, 358
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 2 cut(s) 36, 316
PvuII CAGCTG 1 cut(s) 76
RseI CAYNNNNRTG 3 cut(s) 167, 182, 188
SatI GCNGC 4 cut(s) 252, 333, 567, 603
Sau3AI GATC 2 cut(s) 150, 291
SchI GAGTC 4 cut(s) 77, 181, 239, 358
ScrFI CCNGG 2 cut(s) 20, 202
SetI ASST 8 cut(s) 78, 93, 206, 236, 347, 435, 592, 615
SmiMI CAYNNNNRTG 3 cut(s) 167, 182, 188
Sse9I AATT 5 cut(s) 113, 272, 375, 479, 537
SsiI CCGC 3 cut(s) 81, 489, 567
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 2 cut(s) 18, 200
StyI CCWWGG 2 cut(s) 30, 355
TaaI ACNGT 2 cut(s) 39, 181
TaiI ACGT 2 cut(s) 347, 615
TaqI TCGA 3 cut(s) 228, 264, 410
TasI AATT 5 cut(s) 113, 272, 375, 479, 537
TauI GCSGC 1 cut(s) 569
TscAI CASTG 2 cut(s) 184, 632
TseI GCWGC 3 cut(s) 251, 332, 602
TspDTI ATGAA 5 cut(s) 200, 249, 535, 566, 590
TspGWI ACGGA 1 cut(s) 540
TspRI CASTG 2 cut(s) 184, 632
XapI RAATTY 1 cut(s) 272
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.