Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012668

Physical Location & Seq

Genomic Coordinates Forward (+)

11378465 .. 11379194

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G108000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTTGGAAAACAAATGATGCAGAATCTTTGCAATCCTCTGATGAGCTGAAACGCCAGAAGAAAATCAAAATGGCCATATATATTACTATTTTCGTTGTGTTTCAGATCATAGTTATCACCACGATGAGTCTCACTGTGATGAAAGTCAAGACCCCCAAGTTCAGGCTAGGCAGCAACATCAACTTCCAAAGCTTTGAATCTGTCCCGGCAACGCCTTCATTCGACATGAAATTCACAACCCAAATCAGGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAATGCTGCCAATGTCACGTTTCAATACCAAGGGGCGACTGTGGGAGTAATTGATATCGCAAAGGGCAAGGTTGGATGGCTTTCGACCATAAAAAGAGATGTGGAGGTGAGTTTGAGTTCAAGTGCAATAACTTTTTCAAATCTTGGAAGCGAATTGAGCAGCGGGGTGTTGACGCTCAACAGCGTAGGCAGATTGAATGGAAAAGTTGCAATTATGTTCATAATGAAGAAGAAGAAGGCTACCAACATGAACTGCACCATAGCTTTTGATGTGGCAGCCAAGACGCTCAAATCTTTAGAATGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

199

Amino Acids

21.88

Weight (kDa)

9.98

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012668)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Species

Orthologous Gene IDs

prunus_persica

Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	450
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	165, 249
AgsI	TTSAA	6 cut(s)	200, 289, 311, 408, 426, 484
AluBI	AGCT	3 cut(s)	49, 195, 551
AluI	AGCT	3 cut(s)	49, 195, 551
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	4 cut(s)	174, 293, 447, 563
ApoI	RAATTY	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	112, 406
BalI	TGGCCA	1 cut(s)	77
BbvI	GCAGC	4 cut(s)	186, 280, 459, 575
BccI	CCATC	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	4 cut(s)	175, 294, 448, 564
BlsI	GCNGC	4 cut(s)	176, 295, 449, 565
Bme1390I	CCNGG	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	209
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 249
Bse1I	ACTGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	2 cut(s)	165, 249
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	4 cut(s)	186, 280, 459, 575
BsgI	GTGCAG	1 cut(s)	526
BshFI	GGCC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	165, 249
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	108, 252
BspACI	CCGC	1 cut(s)	450
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	108, 252
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	139, 328
BstDEI	CTNAG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	368
BstKTI	GATC	2 cut(s)	111, 255
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	108, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	207
BstV1I	GCAGC	4 cut(s)	186, 280, 459, 575
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	135
CseI	GACGC	2 cut(s)	469, 580
CviAII	CATG	2 cut(s)	229, 535
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	2 cut(s)	110, 254
DpnII	GATC	2 cut(s)	108, 252
EaeI	YGGCCR	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	316
Eco32I	GATATC	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	2 cut(s)	232, 538
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	228, 534
FauI	CCCGC	1 cut(s)	443
Fnu4HI	GCNGC	4 cut(s)	175, 294, 448, 564
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	4 cut(s)	175, 294, 448, 564
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	4 cut(s)	175, 294, 448, 564
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	2 cut(s)	469, 580
Hin1II	CATG	2 cut(s)	232, 538
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HindIII	AAGCTT	1 cut(s)	193
HinfI	GANTC	3 cut(s)	26, 130, 200
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	112, 406
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	2 cut(s)	43, 108
Hpy188III	TCNNGA	3 cut(s)	151, 250, 256
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	2 cut(s)	228, 517
HpyCH4III	ACNGT	2 cut(s)	139, 328
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	6 cut(s)	23, 34, 413, 497, 543, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	1 cut(s)	262
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	232, 538
Kzo9I	GATC	2 cut(s)	108, 252
LpnPI	CCDG	5 cut(s)	71, 151, 222, 235, 256
Lsp1109I	GCAGC	4 cut(s)	186, 280, 459, 575
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	110, 254
MboI	GATC	2 cut(s)	108, 252
MboII	GAAGA	4 cut(s)	73, 526, 529, 532
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	4 cut(s)	233, 336, 440, 498
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	2 cut(s)	49, 385
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MslI	CAYNNNNRTG	2 cut(s)	125, 140
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	450
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	593
MwoI	GCNNNNNNNGC	1 cut(s)	444
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	108, 252
NlaIII	CATG	2 cut(s)	232, 538
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	301
PctI	GAATGC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	26, 200
PkrI	GCNGC	4 cut(s)	176, 295, 449, 565
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	125, 140
SatI	GCNGC	4 cut(s)	175, 294, 448, 564
Sau3AI	GATC	2 cut(s)	108, 252
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	6 cut(s)	51, 197, 308, 360, 396, 553
SfaNI	GCATC	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	125, 140
Sse9I	AATT	4 cut(s)	233, 336, 440, 498
SsiI	CCGC	1 cut(s)	450
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	139, 328
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	2 cut(s)	225, 371
TasI	AATT	4 cut(s)	233, 336, 440, 498
TfiI	GAWTC	2 cut(s)	26, 200
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	4 cut(s)	174, 293, 447, 563
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	6 cut(s)	158, 210, 245, 496, 527, 551
TspRI	CASTG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	233
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.