Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012668

Physical Location & Seq

Genomic Coordinates Forward (+)

11415986 .. 11416794

Gene Structure 809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G108600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAGAGAGGACTCAACAGGCTTATCCTTCGGCACCAGCAAACCATGGTTACCAAAGAAGTGATGCAGAGTCTTTGGAAAATGCTGATGAGCTGAAACGCAAGAAGAAAATCAAAATGGCCATATATATTGGTATTTTTGTTGTTTTTCAGATCATAGTTATTACCACAATGAGTCTCACTGTGATGAAAGTTAAGACCCCCAGGTTCAGGCTAGGCAACATCAACGTCCAAAGCTTCGAATCTGTCCCAGCAACGCCTTCATTCGACACAAAATTCACAACCCAAATCAAGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAATGCTGCCAATGTCACGTTTCAATACCAAGGCGAGACTGTGGCAGTAATTAATATCGCAAAGGGCAAGGCTGGATGGCTTTCGACCATAAAAAGAAATGCGGAGGTGAGTTTGAATTCAAGTGGAATAACTGGTTCAAATCTTGGCAGCGAATTGAGCAGCGGGGTGTTGACGCTCAACAGTGTAGGCAGATTGAATGGAAAAGTTGCAATTATGTTCATAATGAAGAAGAAGAAGGCTACCAACATGAACTGCACCATAGCTTTTGATGTGGCAGCCAAGACGCTCAAATCTTTACAATGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

213

Amino Acids

23.23

Weight (kDa)

10.04

Isoelectric Point (pI)

29.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012668)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Species

Orthologous Gene IDs

prunus_persica

Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AciI	CCGC	2 cut(s)	431, 492
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	275, 445
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	6 cut(s)	331, 353, 445, 450, 468, 526
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	3 cut(s)	94, 237, 593
AluI	AGCT	3 cut(s)	94, 237, 593
Alw26I	GTCTC	2 cut(s)	182, 359
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	4 cut(s)	335, 477, 489, 605
ApoI	RAATTY	2 cut(s)	275, 445
AseI	ATTAAT	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	448
AsuII	TTCGAA	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	34
BbvI	GCAGC	4 cut(s)	322, 489, 501, 617
BccI	CCATC	1 cut(s)	399
BciT130I	CCWGG	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	182, 359
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	4 cut(s)	336, 478, 490, 606
BlsI	GCNGC	4 cut(s)	337, 479, 491, 607
Bme1390I	CCNGG	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	36, 319
BmrFI	CCNGG	1 cut(s)	205
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	1 cut(s)	55
BmuI	ACTGGG	1 cut(s)	322
Bpu14I	TTCGAA	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	46, 203, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	317, 466
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	3 cut(s)	46, 203, 358
BseGI	GGATG	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	317, 466
BseXI	GCAGC	4 cut(s)	322, 489, 501, 617
BseYI	CCCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	568
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	182, 359
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	153, 294
Bsp19I	CCATGG	1 cut(s)	46
BspACI	CCGC	2 cut(s)	431, 492
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	317
BspLI	GGNNCC	2 cut(s)	36, 319
BspT104I	TTCGAA	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	317, 466
BssECI	CCNNGG	3 cut(s)	46, 203, 358
BssMI	GATC	2 cut(s)	153, 294
BssT1I	CCWWGG	2 cut(s)	46, 358
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	3 cut(s)	184, 370, 512
BstBI	TTCGAA	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	304
BstDSI	CCRYGG	1 cut(s)	46
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	410
BstKTI	GATC	2 cut(s)	156, 297
BstMAI	GTCTC	2 cut(s)	182, 359
BstMBI	GATC	2 cut(s)	153, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	486
BstNI	CCWGG	1 cut(s)	205
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	203
BstV1I	GCAGC	4 cut(s)	322, 489, 501, 617
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	180, 517
CseI	GACGC	2 cut(s)	511, 622
CviAII	CATG	2 cut(s)	47, 577
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	2 cut(s)	155, 296
DpnII	GATC	2 cut(s)	153, 294
EaeI	YGGCCR	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	46, 358
Eco91I	GGTNACC	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	2 cut(s)	46, 358
ErhI	CCWWGG	2 cut(s)	46, 358
FaeI	CATG	2 cut(s)	50, 580
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	46, 576
FauI	CCCGC	1 cut(s)	485
Fnu4HI	GCNGC	4 cut(s)	336, 478, 490, 606
FokI	GGATG	1 cut(s)	417
Fsp4HI	GCNGC	4 cut(s)	336, 478, 490, 606
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	4 cut(s)	336, 478, 490, 606
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	122
HgaI	GACGC	2 cut(s)	511, 622
Hin1II	CATG	2 cut(s)	50, 580
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	4 cut(s)	13, 71, 175, 242
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	2 cut(s)	292, 298
Hpy8I	GTNNAC	1 cut(s)	501
HpyAV	CCTTC	3 cut(s)	39, 270, 559
HpyCH4III	ACNGT	3 cut(s)	184, 370, 512
HpyCH4IV	ACGT	2 cut(s)	228, 347
HpyCH4V	TGCA	4 cut(s)	68, 539, 585, 633
HpyF10VI	GCNNNNNNNGC	1 cut(s)	486
HpyF3I	CTNAG	1 cut(s)	304
HpySE526I	ACGT	2 cut(s)	228, 347
Hsp92II	CATG	2 cut(s)	50, 580
Kzo9I	GATC	2 cut(s)	153, 294
LpnPI	CCDG	9 cut(s)	5, 51, 190, 196, 217, 264, 298, 387, 447
Lsp1109I	GCAGC	4 cut(s)	322, 489, 501, 617
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	2 cut(s)	228, 347
MaeIII	GTNAC	2 cut(s)	50, 343
MalI	GATC	2 cut(s)	155, 296
MboI	GATC	2 cut(s)	153, 294
MboII	GAAGA	4 cut(s)	118, 568, 571, 574
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	5 cut(s)	275, 378, 445, 482, 540
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	3 cut(s)	7, 80, 184
MnlI	CCTC	2 cut(s)	3, 427
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	2 cut(s)	195, 381
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	486
NcoI	CCATGG	1 cut(s)	46
NdeII	GATC	2 cut(s)	153, 294
NlaIII	CATG	2 cut(s)	50, 580
NlaIV	GGNNCC	2 cut(s)	36, 319
NmuCI	GTSAC	1 cut(s)	343
NspV	TTCGAA	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	337, 479, 491, 607
PleI	GAGTC	3 cut(s)	7, 79, 183
PpsI	GAGTC	3 cut(s)	7, 79, 183
PshBI	ATTAAT	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	203
PspEI	GGTNACC	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	36, 319
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	195, 381
SatI	GCNGC	4 cut(s)	336, 478, 490, 606
Sau3AI	GATC	2 cut(s)	153, 294
SchI	GAGTC	3 cut(s)	7, 80, 184
ScrFI	CCNGG	1 cut(s)	205
SetI	ASST	7 cut(s)	96, 209, 231, 239, 350, 438, 595
SfaNI	GCATC	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	5 cut(s)	275, 378, 445, 482, 540
SsiI	CCGC	2 cut(s)	431, 492
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	2 cut(s)	46, 358
TaaI	ACNGT	3 cut(s)	184, 370, 512
TaiI	ACGT	2 cut(s)	231, 350
TaqI	TCGA	3 cut(s)	240, 267, 413
TasI	AATT	5 cut(s)	275, 378, 445, 482, 540
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	195, 381
Tru9I	TTAA	2 cut(s)	195, 381
TscAI	CASTG	2 cut(s)	187, 517
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	4 cut(s)	335, 477, 489, 605
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	5 cut(s)	203, 252, 538, 569, 593
TspRI	CASTG	2 cut(s)	187, 517
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	2 cut(s)	275, 445
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.