Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012668

Physical Location & Seq

Genomic Coordinates Reverse (-)

11446951 .. 11447544

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G109400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTTGGAAAACAAGTGATGCAGAATCTTTGCAATCCTCTGATGAGCTGAAACGCCAGAAGAAAATCAAAATGGCCATATATATTAGTATTTTCGTCGTGTTTCAGATCATAGTTATCACCACAATGAGTCTCACTGTGATGAAAGTTAAGACCCCCAGGTTCAGGCTAGGCAACATCAATGTCGACAGCTTCGTATCTGACTCGGCAGCGCCTTCATTCGACACGAAATTCACAACCCAAATCAAGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAATGCTGCCAATATCACGTTTCAACACCAAGGCGCGACTCTGGCAGTAATTGATATCGCAAAGGGCAAGGCTGGATGGCTTTCGACCATAAAAAGAACTGCGGAGGTGAGTTTGAAGTCAAGTGCAATAAATGGTACAAACTTTGGAAGTGAATTGAGCAGCGGGGTGTTGACGCTCAACAGCGTAGGAAGATTGAATGGAAAAGTTGCAATTATGTTCATCATGAAGAAGAAGAAGGCTGCCAACATGAACTGCACTATTGCCTTTGATGTGGCAGCCAAGACGCTCAAATCTTTACAATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

198

Amino Acids

21.53

Weight (kDa)

10.11

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012668)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Species

Orthologous Gene IDs

prunus_persica

Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	1 cut(s)	320
AciI	CCGC	2 cut(s)	386, 447
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	4 cut(s)	286, 308, 400, 481
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	2 cut(s)	49, 192
AluI	AGCT	2 cut(s)	49, 192
Alw26I	GTCTC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	5 cut(s)	209, 290, 444, 524, 560
ApoI	RAATTY	1 cut(s)	230
AspLEI	GCGC	2 cut(s)	214, 320
AsuHPI	GGTGA	2 cut(s)	112, 403
BalI	TGGCCA	1 cut(s)	77
BbvI	GCAGC	5 cut(s)	221, 277, 456, 511, 572
BccI	CCATC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	170
BfoI	RGCGCY	1 cut(s)	215
BisI	GCNGC	5 cut(s)	210, 291, 445, 525, 561
BlsI	GCNGC	5 cut(s)	211, 292, 446, 526, 562
Bme1390I	CCNGG	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	160
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	158, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	158, 313
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	5 cut(s)	221, 277, 456, 511, 572
BsgI	GTGCAG	1 cut(s)	523
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	108, 249
BspACI	CCGC	2 cut(s)	386, 447
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	320
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	158, 313
BssMI	GATC	2 cut(s)	108, 249
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	365
BstFNI	CGCG	1 cut(s)	320
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	2 cut(s)	214, 320
BstKTI	GATC	2 cut(s)	111, 252
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	108, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	5 cut(s)	221, 277, 456, 511, 572
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	135
CciI	TCATGA	1 cut(s)	507
CfoI	GCGC	2 cut(s)	214, 320
CseI	GACGC	2 cut(s)	466, 577
Csp6I	GTAC	1 cut(s)	420
CviAII	CATG	2 cut(s)	508, 532
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	2 cut(s)	110, 251
DpnII	GATC	2 cut(s)	108, 249
EaeI	YGGCCR	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	158
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	2 cut(s)	511, 535
FaiI	YATR	8 cut(s)	80, 82, 84, 113, 374, 500, 509, 533
FatI	CATG	2 cut(s)	507, 531
FauI	CCCGC	1 cut(s)	440
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	210, 291, 445, 525, 561
FokI	GGATG	1 cut(s)	372
Fsp4HI	GCNGC	5 cut(s)	210, 291, 445, 525, 561
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	2 cut(s)	213, 319
GluI	GCNGC	5 cut(s)	210, 291, 445, 525, 561
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	77
HgaI	GACGC	2 cut(s)	466, 577
HhaI	GCGC	2 cut(s)	214, 320
Hin1II	CATG	2 cut(s)	511, 535
Hin6I	GCGC	2 cut(s)	212, 318
HinP1I	GCGC	2 cut(s)	212, 318
HincII	GTYRAC	2 cut(s)	187, 456
HindII	GTYRAC	2 cut(s)	187, 456
HinfI	GANTC	4 cut(s)	26, 130, 203, 322
HphI	GGTGA	2 cut(s)	112, 403
Hpy166II	GTNNAC	2 cut(s)	187, 456
Hpy188I	TCNGA	3 cut(s)	43, 108, 202
Hpy188III	TCNNGA	3 cut(s)	247, 253, 508
Hpy8I	GTNNAC	2 cut(s)	187, 456
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	225, 514
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	6 cut(s)	23, 34, 410, 494, 540, 588
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	2 cut(s)	511, 535
HspAI	GCGC	2 cut(s)	212, 318
Kzo9I	GATC	2 cut(s)	108, 249
LpnPI	CCDG	7 cut(s)	71, 145, 151, 172, 253, 311, 342
Lsp1109I	GCAGC	5 cut(s)	221, 277, 456, 511, 572
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	302
MalI	GATC	2 cut(s)	110, 251
MboI	GATC	2 cut(s)	108, 249
MboII	GAAGA	5 cut(s)	73, 486, 523, 526, 529
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	4 cut(s)	230, 333, 437, 495
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	3 cut(s)	139, 197, 316
MnlI	CCTC	2 cut(s)	49, 382
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	125, 140
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	447
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	2 cut(s)	108, 249
NlaIII	CATG	2 cut(s)	511, 535
NlaIV	GGNNCC	1 cut(s)	274
NmeAIII	GCCGAG	1 cut(s)	185
PagI	TCATGA	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	5 cut(s)	211, 292, 446, 526, 562
PleI	GAGTC	3 cut(s)	138, 197, 316
PpsI	GAGTC	3 cut(s)	138, 197, 316
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	274
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
RseI	CAYNNNNRTG	2 cut(s)	125, 140
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	5 cut(s)	210, 291, 445, 525, 561
Sau3AI	GATC	2 cut(s)	108, 249
SchI	GAGTC	3 cut(s)	139, 197, 316
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	5 cut(s)	51, 164, 194, 305, 393
SfaNI	GCATC	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	125, 140
Sse9I	AATT	4 cut(s)	230, 333, 437, 495
SsiI	CCGC	2 cut(s)	386, 447
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	3 cut(s)	186, 222, 368
TasI	AATT	4 cut(s)	230, 333, 437, 495
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	5 cut(s)	209, 290, 444, 524, 560
TspDTI	ATGAA	5 cut(s)	158, 207, 493, 524, 548
TspRI	CASTG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.