Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012668

Physical Location & Seq

Genomic Coordinates Forward (+)

11406009 .. 11406946

Gene Structure 938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G108500.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTTGGAAAACAAATGATGCTGAATCTTTGCAATCCTCTGATGAGCTGAAACGCCAGAAGAAAATTAAAATGGCCATATATATTACTATTTTCGTTGTGTTTCAGATCATAGTTATCACCACGATGAGTCTCACTGTGATGAAAGTCAAGACCCCCAAGTTCAGGCTAGGCAGCAACATCAACGTCCAAAGCTTTGAATCAGTCCCGGCAACGCCTTCATTCGACATGAAATTCACAACCCAAATCAGGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAATGCTGCCAATGTCACGTTTCAATACCAAGGCGCAACTGTGGGAGTAATTAATATCGCAAAGGGCAAGGCTGGATGGCTTTCGACCATAAAAAGAAATGTGGAGGTAAGTTTGAATTCAAGTGAAATAACTGGTTCAAATCTTGGCAGCGAATTGAGCCGCGGGGTGTTGACGCTCAACAGCGTAGGCAGATTGAATGGAAAAGTTGCAATTATGTTCATAATGAAGAAGAAGAAGGCTACCAACATGAACTGCACCATAGCTTTTGATGTGGCAGCCAAGACGCTCAAATCTTTACAATGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

199

Amino Acids

21.86

Weight (kDa)

10.18

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012668)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Species

Orthologous Gene IDs

prunus_persica

Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	450
AciI	CCGC	2 cut(s)	448, 450
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	233, 403
AfiI	CCNNNNNNNGG	2 cut(s)	165, 249
AgsI	TTSAA	7 cut(s)	200, 289, 311, 403, 408, 426, 484
AluBI	AGCT	3 cut(s)	49, 195, 551
AluI	AGCT	3 cut(s)	49, 195, 551
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	4 cut(s)	174, 293, 435, 563
ApoI	RAATTY	2 cut(s)	233, 403
AseI	ATTAAT	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	77
BbvI	GCAGC	4 cut(s)	186, 280, 447, 575
BccI	CCATC	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	5 cut(s)	175, 294, 436, 448, 564
BlsI	GCNGC	5 cut(s)	176, 295, 437, 449, 565
Bme1390I	CCNGG	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	209
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	316, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 249
Bse1I	ACTGG	2 cut(s)	275, 424
BseDI	CCNNGG	2 cut(s)	316, 448
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	2 cut(s)	165, 249
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	275, 424
BseXI	GCAGC	4 cut(s)	186, 280, 447, 575
BsgI	GTGCAG	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	165, 249
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	108, 252
BspACI	CCGC	2 cut(s)	448, 450
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	275, 424
BssECI	CCNNGG	2 cut(s)	316, 448
BssMI	GATC	2 cut(s)	108, 252
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	139, 328
BstDEI	CTNAG	1 cut(s)	262
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	2 cut(s)	111, 255
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	108, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	4 cut(s)	186, 280, 447, 575
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	135
CfoI	GCGC	1 cut(s)	323
Cfr42I	CCGCGG	1 cut(s)	451
CseI	GACGC	2 cut(s)	469, 580
CviAII	CATG	2 cut(s)	229, 535
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	2 cut(s)	110, 254
DpnII	GATC	2 cut(s)	108, 252
EaeI	YGGCCR	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	2 cut(s)	232, 538
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	228, 534
FauI	CCCGC	1 cut(s)	443
Fnu4HI	GCNGC	5 cut(s)	175, 294, 436, 448, 564
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	5 cut(s)	175, 294, 436, 448, 564
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	5 cut(s)	175, 294, 436, 448, 564
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	2 cut(s)	469, 580
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	232, 538
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HindIII	AAGCTT	1 cut(s)	193
HinfI	GANTC	3 cut(s)	26, 130, 200
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	2 cut(s)	43, 108
Hpy188III	TCNNGA	3 cut(s)	151, 250, 256
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	2 cut(s)	228, 517
HpyCH4III	ACNGT	2 cut(s)	139, 328
HpyCH4IV	ACGT	2 cut(s)	186, 305
HpyCH4V	TGCA	4 cut(s)	34, 497, 543, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	1 cut(s)	262
HpySE526I	ACGT	2 cut(s)	186, 305
Hsp92II	CATG	2 cut(s)	232, 538
HspAI	GCGC	1 cut(s)	321
KspI	CCGCGG	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	108, 252
LpnPI	CCDG	7 cut(s)	71, 151, 222, 235, 256, 345, 405
Lsp1109I	GCAGC	4 cut(s)	186, 280, 447, 575
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	2 cut(s)	186, 305
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	110, 254
MboI	GATC	2 cut(s)	108, 252
MboII	GAAGA	4 cut(s)	73, 526, 529, 532
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	6 cut(s)	66, 233, 336, 403, 440, 498
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	2 cut(s)	49, 385
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	2 cut(s)	69, 339
MslI	CAYNNNNRTG	2 cut(s)	125, 140
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	450
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	444
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	108, 252
NlaIII	CATG	2 cut(s)	232, 538
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	26, 200
PkrI	GCNGC	5 cut(s)	176, 295, 437, 449, 565
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PshBI	ATTAAT	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	125, 140
SacII	CCGCGG	1 cut(s)	451
SaqAI	TTAA	2 cut(s)	69, 339
SatI	GCNGC	5 cut(s)	175, 294, 436, 448, 564
Sau3AI	GATC	2 cut(s)	108, 252
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	6 cut(s)	51, 189, 197, 308, 396, 553
SfaNI	GCATC	1 cut(s)	10
Sfr303I	CCGCGG	1 cut(s)	451
SgrBI	CCGCGG	1 cut(s)	451
SmiMI	CAYNNNNRTG	2 cut(s)	125, 140
Sse9I	AATT	6 cut(s)	66, 233, 336, 403, 440, 498
SsiI	CCGC	2 cut(s)	448, 450
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	139, 328
TaiI	ACGT	2 cut(s)	189, 308
TaqI	TCGA	2 cut(s)	225, 371
TasI	AATT	6 cut(s)	66, 233, 336, 403, 440, 498
TauI	GCSGC	1 cut(s)	450
TfiI	GAWTC	2 cut(s)	26, 200
Tru1I	TTAA	2 cut(s)	69, 339
Tru9I	TTAA	2 cut(s)	69, 339
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	4 cut(s)	174, 293, 435, 563
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	6 cut(s)	158, 210, 245, 496, 527, 551
TspRI	CASTG	1 cut(s)	142
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	2 cut(s)	233, 403
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.