Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012668

Physical Location & Seq

Genomic Coordinates Forward (+)

11417916 .. 11419088

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G108700.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCAGAGAAGAACCAGCAATTCGCAGCAGCCAATGGCTACTCCAGAAACGATGCAGAATCTGCCACATTGCAATCCGAGGAGGAGCTGAAACGCCAGAAGAGAATCAAAATGGCCATATATATTAGTATTTTTGTTGTTTTTCAGATCATAGTTATTACCACAATGAGTTTGACTGTGATGAAAGTTAAGACCCCCAAGTTCAGGCTAGGCAGCGACATCAACGTCCAAAGCTTCAAATCTGTCCCCGCAACGCCTTCATTCGACATGAAATTCACAACCCAAATCAGGATCAAGAACTCAGCCAACTGGGGTTCCTACAAGTTCAATACTGCCAATGTCACGTTTCAATACCAAGGTGCGACTGTGGGAGTAATTGATATCGCAAAGGGCAAGGTTGGATGGCTTTCGACCATAAAAAGAAATGCGGAGGTGAGTTTGAGTTCAAGTGGATTAACTGGTTCAAATCTTGAAAGCGAATTGAGCAGCGGGGTGTTGACGCTCAATAGCGTAGGCAGATTGAATGGAAAAGTAGCAATTATGTTCATAATGAAGAAGAAGAAGGCTACCAACATGAACTGCACCATAGCTTTCGATGTGGCAGCCAAGACCCTCAAATCTTTAGAATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

212

Amino Acids

23.19

Weight (kDa)

9.94

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012668)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Species

Orthologous Gene IDs

prunus_persica

Prupe.5G107500_v2.0.a1 Prupe.5G107600_v2.0.a1 Prupe.5G107700_v2.0.a1 Prupe.5G107800_v2.0.a1 Prupe.5G108000_v2.0.a1 Prupe.5G108100_v2.0.a1 Prupe.5G108200_v2.0.a1 Prupe.5G108300_v2.0.a1 Prupe.5G108400_v2.0.a1 Prupe.5G108500_v2.0.a1 Prupe.5G108600_v2.0.a1 Prupe.5G108700_v2.0.a1 Prupe.5G108900_v2.0.a1 Prupe.5G109000_v2.0.a1 Prupe.5G109100_v2.0.a1 Prupe.5G109200_v2.0.a1 Prupe.5G109400_v2.0.a1 Prupe.5G109500_v2.0.a1 Prupe.5G109600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AciI	CCGC	3 cut(s)	249, 428, 489
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	204, 288
AgsI	TTSAA	7 cut(s)	238, 328, 350, 447, 465, 473, 523
AluBI	AGCT	3 cut(s)	88, 234, 590
AluI	AGCT	3 cut(s)	88, 234, 590
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	5 cut(s)	26, 29, 213, 486, 602
ApoI	RAATTY	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	116
BbvI	GCAGC	5 cut(s)	38, 41, 225, 498, 614
BccI	CCATC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	5 cut(s)	27, 30, 214, 487, 603
BlsI	GCNGC	5 cut(s)	28, 31, 215, 488, 604
BmiI	GGNNCC	1 cut(s)	316
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	78, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 288
Bse1I	ACTGG	2 cut(s)	314, 463
Bse3DI	GCAATG	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	78, 355
BseGI	GGATG	1 cut(s)	407
BseLI	CCNNNNNNNGG	2 cut(s)	204, 288
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	314, 463
BseRI	GAGGAG	2 cut(s)	95, 98
BseXI	GCAGC	5 cut(s)	38, 41, 225, 498, 614
BsgI	GTGCAG	1 cut(s)	565
BshFI	GGCC	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	204, 288
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	147, 291
BspACI	CCGC	3 cut(s)	249, 428, 489
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	314, 463
BssECI	CCNNGG	2 cut(s)	78, 355
BssMI	GATC	2 cut(s)	147, 291
BssT1I	CCWWGG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	178, 367
Bst6I	CTCTTC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	407
BstKTI	GATC	2 cut(s)	150, 294
BstMBI	GATC	2 cut(s)	147, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 483
BstV1I	GCAGC	5 cut(s)	38, 41, 225, 498, 614
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	407
CaiI	CAGNNNCTG	1 cut(s)	62
CseI	GACGC	1 cut(s)	508
CviAII	CATG	2 cut(s)	268, 574
DdeI	CTNAG	1 cut(s)	301
DpnI	GATC	2 cut(s)	149, 293
DpnII	GATC	2 cut(s)	147, 291
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	2 cut(s)	271, 577
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	2 cut(s)	267, 573
FauI	CCCGC	2 cut(s)	256, 482
Fnu4HI	GCNGC	5 cut(s)	27, 30, 214, 487, 603
FokI	GGATG	1 cut(s)	414
Fsp4HI	GCNGC	5 cut(s)	27, 30, 214, 487, 603
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	5 cut(s)	27, 30, 214, 487, 603
GsuI	CTGGAG	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	116
HgaI	GACGC	1 cut(s)	508
Hin1II	CATG	2 cut(s)	271, 577
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	2 cut(s)	59, 105
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	498
Hpy188I	TCNGA	2 cut(s)	79, 147
Hpy188III	TCNNGA	4 cut(s)	45, 289, 295, 470
Hpy8I	GTNNAC	1 cut(s)	498
HpyAV	CCTTC	2 cut(s)	267, 556
HpyCH4III	ACNGT	2 cut(s)	178, 367
HpyCH4IV	ACGT	2 cut(s)	225, 344
HpyCH4V	TGCA	4 cut(s)	56, 73, 582, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 483
HpyF3I	CTNAG	1 cut(s)	301
HpySE526I	ACGT	2 cut(s)	225, 344
Hsp92II	CATG	2 cut(s)	271, 577
Kzo9I	GATC	2 cut(s)	147, 291
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	7 cut(s)	29, 58, 110, 190, 274, 295, 444
Lsp1109I	GCAGC	5 cut(s)	38, 41, 225, 498, 614
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	2 cut(s)	225, 344
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	2 cut(s)	149, 293
MboI	GATC	2 cut(s)	147, 291
MboII	GAAGA	5 cut(s)	22, 112, 565, 568, 571
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	5 cut(s)	20, 272, 375, 479, 537
MluNI	TGGCCA	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	4 cut(s)	73, 76, 424, 623
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	2 cut(s)	189, 455
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	632
MwoI	GCNNNNNNNGC	2 cut(s)	62, 483
NdeII	GATC	2 cut(s)	147, 291
NlaIII	CATG	2 cut(s)	271, 577
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	340
PctI	GAATGC	1 cut(s)	632
PfeI	GAWTC	2 cut(s)	59, 105
PkrI	GCNGC	5 cut(s)	28, 31, 215, 488, 604
PspN4I	GGNNCC	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	189, 455
SatI	GCNGC	5 cut(s)	27, 30, 214, 487, 603
Sau3AI	GATC	2 cut(s)	147, 291
SetI	ASST	8 cut(s)	90, 228, 236, 347, 361, 399, 435, 592
SfaNI	GCATC	1 cut(s)	43
Sse9I	AATT	5 cut(s)	20, 272, 375, 479, 537
SsiI	CCGC	3 cut(s)	249, 428, 489
SspMI	CTAG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	178, 367
TaiI	ACGT	2 cut(s)	228, 347
TaqI	TCGA	3 cut(s)	264, 410, 594
TasI	AATT	5 cut(s)	20, 272, 375, 479, 537
TfiI	GAWTC	2 cut(s)	59, 105
Tru1I	TTAA	2 cut(s)	189, 455
Tru9I	TTAA	2 cut(s)	189, 455
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	5 cut(s)	26, 29, 213, 486, 602
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	6 cut(s)	197, 249, 284, 535, 566, 590
XapI	RAATTY	1 cut(s)	272
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.