Belongs to the eukaryotic-type primase small subunit family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G41880 |
| fragaria_vesca | FvH4_5g04460 |
| malus_domestica | MD06G1105400.v1.1 |
| prunus_persica | Prupe.5G117700_v2.0.a1 |
| pyrus_communis | pycom06g09970 |
| rosa_chinensis | RchiOBHm_Chr7g0195041 |
| rosa_laevigata | RLG00000004150 RLG00000008501 RLG00000015305 |
| rosa_multiflora | Rmu_sc0002246.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00260810 |
| rosa_rugosa | Rorug07G0020100 Rorug07G0020200 |
| rosa_samantha | Rh6BG025100 Rh6BG025600 Rh6BG025700 Rh6BG026500 Rh6BG026600 Rh6CG024600 Rh6DG024100 Rh6DG024400 Rh7AG147700 Rh7BG148300 Rh7CG152000 |
| rosa_wichuraiana | Rw2G021680 Rw5G042100 Rw6G002490 Rw7G012610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 984 |
| Acc16I | TGCGCA | 1 cut(s) | 992 |
| Acc36I | ACCTGC | 1 cut(s) | 984 |
| AccB1I | GGYRCC | 1 cut(s) | 1078 |
| AciI | CCGC | 4 cut(s) | 137, 250, 491, 903 |
| AclWI | GGATC | 4 cut(s) | 338, 839, 1121, 1145 |
| AcoI | YGGCCR | 1 cut(s) | 488 |
| AcsI | RAATTY | 2 cut(s) | 286, 1145 |
| AcuI | CTGAAG | 1 cut(s) | 768 |
| AcyI | GRCGYC | 1 cut(s) | 1079 |
| AfaI | GTAC | 3 cut(s) | 335, 1092, 1164 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1032, 1103, 1141, 1365 |
| AgsI | TTSAA | 7 cut(s) | 265, 284, 351, 804, 912, 1004, 1053 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1240 |
| AjiI | CACGTC | 1 cut(s) | 581 |
| AleI | CACNNNNGTG | 1 cut(s) | 395 |
| AluBI | AGCT | 7 cut(s) | 124, 280, 409, 467, 644, 871, 946 |
| AluI | AGCT | 7 cut(s) | 124, 280, 409, 467, 644, 871, 946 |
| Alw26I | GTCTC | 1 cut(s) | 3 |
| AlwI | GGATC | 4 cut(s) | 338, 839, 1121, 1145 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 988, 1291 |
| Ama87I | CYCGRG | 1 cut(s) | 460 |
| AoxI | GGCC | 2 cut(s) | 326, 488 |
| ApeKI | GCWGC | 8 cut(s) | 27, 456, 641, 871, 943, 958, 1285, 1342 |
| ApoI | RAATTY | 2 cut(s) | 286, 1145 |
| AseI | ATTAAT | 1 cut(s) | 924 |
| AspA2I | CCTAGG | 1 cut(s) | 1031 |
| AspLEI | GCGC | 2 cut(s) | 993, 1081 |
| AspS9I | GGNCC | 1 cut(s) | 326 |
| AsuHPI | GGTGA | 2 cut(s) | 304, 382 |
| AvaI | CYCGRG | 1 cut(s) | 460 |
| AvrII | CCTAGG | 1 cut(s) | 1031 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1146, 1179 |
| BanI | GGYRCC | 1 cut(s) | 1078 |
| BbsI | GAAGAC | 1 cut(s) | 583 |
| BbvI | GCAGC | 8 cut(s) | 39, 443, 653, 858, 945, 955, 1297, 1354 |
| BccI | CCATC | 6 cut(s) | 77, 164, 599, 729, 930, 1309 |
| BceAI | ACGGC | 1 cut(s) | 1173 |
| BclI | TGATCA | 1 cut(s) | 850 |
| BcoDI | GTCTC | 1 cut(s) | 3 |
| BfaI | CTAG | 1 cut(s) | 1032 |
| BfmI | CTRYAG | 1 cut(s) | 1340 |
| BfoI | RGCGCY | 1 cut(s) | 1082 |
| BfuAI | ACCTGC | 1 cut(s) | 984 |
| BglII | AGATCT | 2 cut(s) | 737, 825 |
| BisI | GCNGC | 9 cut(s) | 28, 457, 491, 642, 872, 944, 959, 1286, 1343 |
| BlnI | CCTAGG | 1 cut(s) | 1031 |
| BlsI | GCNGC | 9 cut(s) | 29, 458, 492, 643, 873, 945, 960, 1287, 1344 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1240 |
| BmeT110I | CYCGRG | 1 cut(s) | 460 |
| BmgBI | CACGTC | 1 cut(s) | 581 |
| BmgT120I | GGNCC | 1 cut(s) | 326 |
| BmiI | GGNNCC | 3 cut(s) | 78, 254, 1080 |
| BmrI | ACTGGG | 1 cut(s) | 389 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BmuI | ACTGGG | 1 cut(s) | 389 |
| BpiI | GAAGAC | 1 cut(s) | 583 |
| BpmI | CTGGAG | 1 cut(s) | 27 |
| Bsa29I | ATCGAT | 1 cut(s) | 1125 |
| BsaBI | GATNNNNATC | 1 cut(s) | 849 |
| BsaHI | GRCGYC | 1 cut(s) | 1079 |
| BsaJI | CCNNGG | 2 cut(s) | 1031, 1155 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 30, 456, 486 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1032, 1103, 1141, 1365 |
| Bse1I | ACTGG | 7 cut(s) | 10, 193, 234, 256, 308, 395, 712 |
| Bse3DI | GCAATG | 2 cut(s) | 589, 682 |
| Bse8I | GATNNNNATC | 1 cut(s) | 849 |
| BseCI | ATCGAT | 1 cut(s) | 1125 |
| BseDI | CCNNGG | 2 cut(s) | 1031, 1155 |
| BseGI | GGATG | 4 cut(s) | 159, 178, 721, 1093 |
| BseJI | GATNNNNATC | 1 cut(s) | 849 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1032, 1103, 1141, 1365 |
| BseMI | GCAATG | 2 cut(s) | 589, 682 |
| BseMII | CTCAG | 4 cut(s) | 267, 383, 798, 858 |
| BseNI | ACTGG | 7 cut(s) | 10, 193, 234, 256, 308, 395, 712 |
| BseRI | GAGGAG | 2 cut(s) | 824, 1325 |
| BseXI | GCAGC | 8 cut(s) | 39, 443, 653, 858, 945, 955, 1297, 1354 |
| BseYI | CCCAGC | 1 cut(s) | 594 |
| BsgI | GTGCAG | 1 cut(s) | 1001 |
| BshFI | GGCC | 2 cut(s) | 328, 490 |
| BshNI | GGYRCC | 1 cut(s) | 1078 |
| BshVI | ATCGAT | 1 cut(s) | 1125 |
| BsiHKCI | CYCGRG | 1 cut(s) | 460 |
| BsiSI | CCGG | 1 cut(s) | 208 |
| BslFI | GGGAC | 2 cut(s) | 999, 1247 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1032, 1103, 1141, 1365 |
| BsmAI | GTCTC | 1 cut(s) | 3 |
| BsmBI | CGTCTC | 1 cut(s) | 3 |
| BsmFI | GGGAC | 2 cut(s) | 999, 1247 |
| BsnI | GGCC | 2 cut(s) | 328, 490 |
| BsoBI | CYCGRG | 1 cut(s) | 460 |
| Bsp1407I | TGTACA | 2 cut(s) | 333, 1090 |
| Bsp143I | GATC | 8 cut(s) | 343, 737, 825, 844, 850, 1126, 1150, 1271 |
| BspACI | CCGC | 4 cut(s) | 137, 250, 491, 903 |
| BspANI | GGCC | 2 cut(s) | 328, 490 |
| BspCNI | CTCAG | 4 cut(s) | 268, 382, 799, 859 |
| BspDI | ATCGAT | 1 cut(s) | 1125 |
| BspLI | GGNNCC | 3 cut(s) | 78, 254, 1080 |
| BspMAI | CTGCAG | 1 cut(s) | 1344 |
| BspMI | ACCTGC | 1 cut(s) | 984 |
| BspPI | GGATC | 4 cut(s) | 338, 839, 1121, 1145 |
| BspT107I | GGYRCC | 1 cut(s) | 1078 |
| BsrDI | GCAATG | 2 cut(s) | 589, 682 |
| BsrGI | TGTACA | 2 cut(s) | 333, 1090 |
| BsrI | ACTGG | 7 cut(s) | 10, 193, 234, 256, 308, 395, 712 |
| BssECI | CCNNGG | 2 cut(s) | 1031, 1155 |
| BssMI | GATC | 8 cut(s) | 343, 737, 825, 844, 850, 1126, 1150, 1271 |
| BssNI | GRCGYC | 1 cut(s) | 1079 |
| BssT1I | CCWWGG | 1 cut(s) | 1031 |
| Bst4CI | ACNGT | 2 cut(s) | 338, 686 |
| Bst6I | CTCTTC | 1 cut(s) | 999 |
| BstACI | GRCGYC | 1 cut(s) | 1079 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 647, 988, 1291 |
| BstAUI | TGTACA | 2 cut(s) | 333, 1090 |
| BstC8I | GCNNGC | 2 cut(s) | 360, 488 |
| BstDEI | CTNAG | 6 cut(s) | 276, 369, 530, 807, 829, 867 |
| BstDSI | CCRYGG | 1 cut(s) | 1155 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1030 |
| BstF5I | GGATG | 4 cut(s) | 159, 178, 721, 1093 |
| BstH2I | RGCGCY | 1 cut(s) | 1082 |
| BstHHI | GCGC | 2 cut(s) | 993, 1081 |
| BstKTI | GATC | 8 cut(s) | 346, 740, 828, 847, 853, 1129, 1153, 1274 |
| BstMAI | GTCTC | 1 cut(s) | 3 |
| BstMBI | GATC | 8 cut(s) | 343, 737, 825, 844, 850, 1126, 1150, 1271 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 647, 988, 1291 |
| BstNSI | RCATGY | 2 cut(s) | 362, 958 |
| BstSFI | CTRYAG | 1 cut(s) | 1340 |
| BstV1I | GCAGC | 8 cut(s) | 39, 443, 653, 858, 945, 955, 1297, 1354 |
| BstV2I | GAAGAC | 1 cut(s) | 583 |
| BstX2I | RGATCY | 2 cut(s) | 737, 825 |
| BstYI | RGATCY | 2 cut(s) | 737, 825 |
| Bsu15I | ATCGAT | 1 cut(s) | 1125 |
| BsuRI | GGCC | 2 cut(s) | 328, 490 |
| BsuTUI | ATCGAT | 1 cut(s) | 1125 |
| BtgI | CCRYGG | 1 cut(s) | 1155 |
| BtgZI | GCGATG | 1 cut(s) | 45 |
| BtrI | CACGTC | 1 cut(s) | 581 |
| BtsCI | GGATG | 4 cut(s) | 159, 178, 721, 1093 |
| BtsIMutI | CAGTG | 3 cut(s) | 227, 343, 402 |
| BveI | ACCTGC | 1 cut(s) | 984 |
| Cac8I | GCNNGC | 2 cut(s) | 360, 488 |
| CaiI | CAGNNNCTG | 2 cut(s) | 988, 1291 |
| CfoI | GCGC | 2 cut(s) | 993, 1081 |
| Cfr13I | GGNCC | 1 cut(s) | 326 |
| ClaI | ATCGAT | 1 cut(s) | 1125 |
| Csp6I | GTAC | 3 cut(s) | 334, 1091, 1163 |
| CviAII | CATG | 4 cut(s) | 37, 359, 955, 1042 |
| CviQI | GTAC | 3 cut(s) | 334, 1091, 1163 |
| DdeI | CTNAG | 6 cut(s) | 276, 369, 530, 807, 829, 867 |
| DinI | GGCGCC | 1 cut(s) | 1080 |
| DpnI | GATC | 8 cut(s) | 345, 739, 827, 846, 852, 1128, 1152, 1273 |
| DpnII | GATC | 8 cut(s) | 343, 737, 825, 844, 850, 1126, 1150, 1271 |
| DraI | TTTAAA | 1 cut(s) | 148 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1240 |
| EaeI | YGGCCR | 1 cut(s) | 488 |
| Eam1104I | CTCTTC | 1 cut(s) | 999 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1240 |
| EarI | CTCTTC | 1 cut(s) | 999 |
| Eco130I | CCWWGG | 1 cut(s) | 1031 |
| Eco57I | CTGAAG | 1 cut(s) | 768 |
| Eco88I | CYCGRG | 1 cut(s) | 460 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1030 |
| EcoT14I | CCWWGG | 1 cut(s) | 1031 |
| EcoT22I | ATGCAT | 1 cut(s) | 364 |
| EgeI | GGCGCC | 1 cut(s) | 1080 |
| EheI | GGCGCC | 1 cut(s) | 1080 |
| ErhI | CCWWGG | 1 cut(s) | 1031 |
| Esp3I | CGTCTC | 1 cut(s) | 3 |
| FaeI | CATG | 4 cut(s) | 40, 362, 958, 1045 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1343 |
| FaqI | GGGAC | 2 cut(s) | 999, 1247 |
| FatI | CATG | 4 cut(s) | 36, 358, 954, 1041 |
| FauNDI | CATATG | 3 cut(s) | 133, 364, 1059 |
| FbaI | TGATCA | 1 cut(s) | 850 |
| Fnu4HI | GCNGC | 9 cut(s) | 28, 457, 491, 642, 872, 944, 959, 1286, 1343 |
| FokI | GGATG | 4 cut(s) | 165, 166, 708, 1080 |
| Fsp4HI | GCNGC | 9 cut(s) | 28, 457, 491, 642, 872, 944, 959, 1286, 1343 |
| FspBI | CTAG | 1 cut(s) | 1032 |
| FspI | TGCGCA | 1 cut(s) | 992 |
| GlaI | GCGC | 2 cut(s) | 992, 1080 |
| GluI | GCNGC | 9 cut(s) | 28, 457, 491, 642, 872, 944, 959, 1286, 1343 |
| GsaI | CCCAGC | 1 cut(s) | 598 |
| GsuI | CTGGAG | 1 cut(s) | 27 |
| HaeII | RGCGCY | 1 cut(s) | 1082 |
| HaeIII | GGCC | 2 cut(s) | 328, 490 |
| HapII | CCGG | 1 cut(s) | 208 |
| HhaI | GCGC | 2 cut(s) | 993, 1081 |
| Hin1I | GRCGYC | 1 cut(s) | 1079 |
| Hin1II | CATG | 4 cut(s) | 40, 362, 958, 1045 |
| Hin6I | GCGC | 2 cut(s) | 991, 1079 |
| HinP1I | GCGC | 2 cut(s) | 991, 1079 |
| HinfI | GANTC | 2 cut(s) | 787, 838 |
| HpaII | CCGG | 1 cut(s) | 208 |
| HphI | GGTGA | 2 cut(s) | 304, 382 |
| Hpy166II | GTNNAC | 3 cut(s) | 112, 334, 1091 |
| Hpy188I | TCNGA | 5 cut(s) | 277, 372, 433, 868, 1271 |
| Hpy188III | TCNNGA | 6 cut(s) | 80, 462, 791, 842, 848, 966 |
| Hpy8I | GTNNAC | 3 cut(s) | 112, 334, 1091 |
| Hpy99I | CGWCG | 1 cut(s) | 443 |
| HpyAV | CCTTC | 2 cut(s) | 357, 612 |
| HpyCH4III | ACNGT | 2 cut(s) | 338, 686 |
| HpyCH4IV | ACGT | 2 cut(s) | 580, 1241 |
| HpyCH4V | TGCA | 6 cut(s) | 362, 961, 982, 1285, 1305, 1342 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 647, 988, 1291 |
| HpyF3I | CTNAG | 6 cut(s) | 276, 369, 530, 807, 829, 867 |
| HpySE526I | ACGT | 2 cut(s) | 580, 1241 |
| Hsp92I | GRCGYC | 1 cut(s) | 1079 |
| Hsp92II | CATG | 4 cut(s) | 40, 362, 958, 1045 |
| HspAI | GCGC | 2 cut(s) | 991, 1079 |
| KasI | GGCGCC | 1 cut(s) | 1078 |
| Ksp22I | TGATCA | 1 cut(s) | 850 |
| Kzo9I | GATC | 8 cut(s) | 343, 737, 825, 844, 850, 1126, 1150, 1271 |
| LmnI | GCTCC | 3 cut(s) | 406, 464, 940 |
| Lsp1109I | GCAGC | 8 cut(s) | 39, 443, 653, 858, 945, 955, 1297, 1354 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 1 cut(s) | 1032 |
| MaeII | ACGT | 2 cut(s) | 580, 1241 |
| MaeIII | GTNAC | 2 cut(s) | 551, 1242 |
| MalI | GATC | 8 cut(s) | 345, 739, 827, 846, 852, 1128, 1152, 1273 |
| MboI | GATC | 8 cut(s) | 343, 737, 825, 844, 850, 1126, 1150, 1271 |
| MboII | GAAGA | 4 cut(s) | 588, 909, 1016, 1363 |
| MfeI | CAATTG | 1 cut(s) | 501 |
| MflI | RGATCY | 2 cut(s) | 737, 825 |
| MluCI | AATT | 5 cut(s) | 286, 501, 776, 907, 1145 |
| Mly113I | GGCGCC | 1 cut(s) | 1079 |
| MlyI | GAGTC | 1 cut(s) | 796 |
| Mph1103I | ATGCAT | 1 cut(s) | 364 |
| MseI | TTAA | 5 cut(s) | 90, 147, 924, 1073, 1208 |
| MslI | CAYNNNNRTG | 2 cut(s) | 363, 395 |
| MspA1I | CMGCKG | 1 cut(s) | 946 |
| MspI | CCGG | 1 cut(s) | 208 |
| MunI | CAATTG | 1 cut(s) | 501 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 647, 988, 1291 |
| NarI | GGCGCC | 1 cut(s) | 1079 |
| NdeI | CATATG | 3 cut(s) | 133, 364, 1059 |
| NdeII | GATC | 8 cut(s) | 343, 737, 825, 844, 850, 1126, 1150, 1271 |
| NlaIII | CATG | 4 cut(s) | 40, 362, 958, 1045 |
| NlaIV | GGNNCC | 3 cut(s) | 78, 254, 1080 |
| NmuCI | GTSAC | 2 cut(s) | 551, 1242 |
| NsbI | TGCGCA | 1 cut(s) | 992 |
| NsiI | ATGCAT | 1 cut(s) | 364 |
| NspI | RCATGY | 2 cut(s) | 362, 958 |
| OliI | CACNNNNGTG | 1 cut(s) | 395 |
| PaeI | GCATGC | 1 cut(s) | 362 |
| PaqCI | CACCTGC | 1 cut(s) | 984 |
| PfeI | GAWTC | 1 cut(s) | 838 |
| PkrI | GCNGC | 9 cut(s) | 29, 458, 492, 643, 873, 945, 960, 1287, 1344 |
| PleI | GAGTC | 1 cut(s) | 795 |
| PluTI | GGCGCC | 1 cut(s) | 1082 |
| PpsI | GAGTC | 1 cut(s) | 795 |
| PshBI | ATTAAT | 1 cut(s) | 924 |
| PspFI | CCCAGC | 1 cut(s) | 594 |
| PspN4I | GGNNCC | 3 cut(s) | 78, 254, 1080 |
| PspPI | GGNCC | 1 cut(s) | 326 |
| PstI | CTGCAG | 1 cut(s) | 1344 |
| PstNI | CAGNNNCTG | 2 cut(s) | 988, 1291 |
| PsuI | RGATCY | 2 cut(s) | 737, 825 |
| PvuII | CAGCTG | 1 cut(s) | 946 |
| RsaI | GTAC | 3 cut(s) | 335, 1092, 1164 |
| RsaNI | GTAC | 3 cut(s) | 334, 1091, 1163 |
| RseI | CAYNNNNRTG | 2 cut(s) | 363, 395 |
| SaqAI | TTAA | 5 cut(s) | 90, 147, 924, 1073, 1208 |
| SatI | GCNGC | 9 cut(s) | 28, 457, 491, 642, 872, 944, 959, 1286, 1343 |
| Sau3AI | GATC | 8 cut(s) | 343, 737, 825, 844, 850, 1126, 1150, 1271 |
| Sau96I | GGNCC | 1 cut(s) | 326 |
| SchI | GAGTC | 1 cut(s) | 796 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SfcI | CTRYAG | 1 cut(s) | 1340 |
| SfoI | GGCGCC | 1 cut(s) | 1080 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 363, 395 |
| SphI | GCATGC | 1 cut(s) | 362 |
| Sse9I | AATT | 5 cut(s) | 286, 501, 776, 907, 1145 |
| SsiI | CCGC | 4 cut(s) | 137, 250, 491, 903 |
| SspDI | GGCGCC | 1 cut(s) | 1078 |
| SspI | AATATT | 1 cut(s) | 1198 |
| SspMI | CTAG | 1 cut(s) | 1032 |
| StyI | CCWWGG | 1 cut(s) | 1031 |
| TaaI | ACNGT | 2 cut(s) | 338, 686 |
| TaiI | ACGT | 2 cut(s) | 583, 1244 |
| TaqI | TCGA | 3 cut(s) | 417, 1125, 1349 |
| TasI | AATT | 5 cut(s) | 286, 501, 776, 907, 1145 |
| TatI | WGTACW | 2 cut(s) | 333, 1090 |
| TauI | GCSGC | 1 cut(s) | 493 |
| TfiI | GAWTC | 1 cut(s) | 838 |
| Tru1I | TTAA | 5 cut(s) | 90, 147, 924, 1073, 1208 |
| Tru9I | TTAA | 5 cut(s) | 90, 147, 924, 1073, 1208 |
| TscAI | CASTG | 3 cut(s) | 234, 343, 402 |
| TseFI | GTSAC | 2 cut(s) | 551, 1242 |
| TseI | GCWGC | 8 cut(s) | 27, 456, 641, 871, 943, 958, 1285, 1342 |
| Tsp45I | GTSAC | 2 cut(s) | 551, 1242 |
| TspDTI | ATGAA | 7 cut(s) | 69, 578, 645, 693, 834, 1076, 1314 |
| TspGWI | ACGGA | 1 cut(s) | 714 |
| TspRI | CASTG | 3 cut(s) | 234, 343, 402 |
| VspI | ATTAAT | 1 cut(s) | 924 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1030 |
| XapI | RAATTY | 2 cut(s) | 286, 1145 |
| XceI | RCATGY | 2 cut(s) | 362, 958 |
| XmaJI | CCTAGG | 1 cut(s) | 1031 |
| XspI | CTAG | 1 cut(s) | 1032 |
| Zsp2I | ATGCAT | 1 cut(s) | 364 |