Prupe.5G117700_v2.0.a1

Belongs to the eukaryotic-type primase small subunit family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
11904615 .. 11909908
5294 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G117700.1

Sequence Viewer

Length: 1371 bp
ATGACTGGAGACGAAGTTTCCAAAGGCAGCGATGACATGATGATTGACGAATATGAACAGAAGCAAGGGAATGTGGTTCCTGATGGATTTAACTCTCATTATCTCAAAGTTTACTATGGAAAGCTCTTTCCATATGCGGATATTTTTAAATGGATGTCCTATGGAAATGATGGGAAGCATCCTGTGTGCGACCAGTCCTACTTTAGCCGGAGAGAGTTCTCTTTCACACTGGATAATGAGGTTTATCTGCGGTTCCAGTCTTTCAACTCTATGTCTGAGCTTGAAAATTCGGTGAAAGAAAAGTGTCCAGTCAAAATAGATATTGGGCCTGTGTACAGTGTTGATCCTTCAAAGAGGCATGCATATGCTCAGAGTGGCGATAATGTTTTCACCCCAGTGGAGAGGGAGCTGATTTTCGATATAGATATGTCAGATTACGACGATGTTAGATACTGCTGCTCGGGAGCTGATGTTTGTTTGGAGTGCTGGCCGCTTATGACAATTGCTGTCAAAGTTATTGATACTTCCCTTAGAGATGACTTTGGTTTCAGTCACATTCTCTGGGTATATAGTGGAAGACGTGGTGTTCATTGCTGGGTTTGTGATGGGAAAGCAAGAAGGCTGACAAATGAACAAAGAGCAGCTATTGCTGACTATTTTCGTGTCTATAAGGGCAATGAAAACAGTCATAAAAAGGTTTCTTTTACTGGTCTTGCTCTCCATCCGTTCCTTGCGAGATCTTATACTGAAGTTCTTATGGATTTCTTTGAGAGGAAATTGCTTTTGAGTCAAGAGATATTTTCAACTGAGGAGAGATATGAAAAGATCTTAGATATGATTCCTGATCCTGATCAATCTATTACTTCTGAGCTGCGTGGGAAATGGCAGGAAAAGAGAAGAACCGCTAATTCAAAAGATGACATTAATGTTGTTAGATGGGAGCAGCTGAAAAACATGCTGCAATCTGGAAAACATAAGGTGCAGGGACTGCGCAGGTGTGTTGAAGAGATTGTGTTCTCTTTTACCTACCCTAGGCTTGACATGGAGGTTTCAAAACATATGAACCATTTGTTAAAGGCGCCATTCTGTGTACATCCAAAAACAGGTCGTGTCTGTGTTCCAATCGATCCAAACCGATGTGAGGAATTTGATCCCACGGCAGTACCAACCCTTTCCAATCTTTTAGAACAACTCAATATTGGAGGTTTAAGAGCAGAAGTTGATAATGAGTGGGACAGAACGTCACTTGGAAAATCAATAAGGTTTTTCAGATCGTCATTTTTGCAGCCTCTGCTAAAATCTTGCAAGGAGGAGATGGAAAGTTCATACAATGCGAAACTGCAGCAGTCGAAGAACTCCTTTAGTTGGTAA

Protein Analysis

457

Amino Acids

52.98

Weight (kDa)

5.95

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 984
Acc16I TGCGCA 1 cut(s) 992
Acc36I ACCTGC 1 cut(s) 984
AccB1I GGYRCC 1 cut(s) 1078
AciI CCGC 4 cut(s) 137, 250, 491, 903
AclWI GGATC 4 cut(s) 338, 839, 1121, 1145
AcoI YGGCCR 1 cut(s) 488
AcsI RAATTY 2 cut(s) 286, 1145
AcuI CTGAAG 1 cut(s) 768
AcyI GRCGYC 1 cut(s) 1079
AfaI GTAC 3 cut(s) 335, 1092, 1164
AfiI CCNNNNNNNGG 4 cut(s) 1032, 1103, 1141, 1365
AgsI TTSAA 7 cut(s) 265, 284, 351, 804, 912, 1004, 1053
AhdI GACNNNNNGTC 1 cut(s) 1240
AjiI CACGTC 1 cut(s) 581
AleI CACNNNNGTG 1 cut(s) 395
AluBI AGCT 7 cut(s) 124, 280, 409, 467, 644, 871, 946
AluI AGCT 7 cut(s) 124, 280, 409, 467, 644, 871, 946
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 4 cut(s) 338, 839, 1121, 1145
AlwNI CAGNNNCTG 2 cut(s) 988, 1291
Ama87I CYCGRG 1 cut(s) 460
AoxI GGCC 2 cut(s) 326, 488
ApeKI GCWGC 8 cut(s) 27, 456, 641, 871, 943, 958, 1285, 1342
ApoI RAATTY 2 cut(s) 286, 1145
AseI ATTAAT 1 cut(s) 924
AspA2I CCTAGG 1 cut(s) 1031
AspLEI GCGC 2 cut(s) 993, 1081
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 304, 382
AvaI CYCGRG 1 cut(s) 460
AvrII CCTAGG 1 cut(s) 1031
BaeI ACNNNNGTAYC 2 cut(s) 1146, 1179
BanI GGYRCC 1 cut(s) 1078
BbsI GAAGAC 1 cut(s) 583
BbvI GCAGC 8 cut(s) 39, 443, 653, 858, 945, 955, 1297, 1354
BccI CCATC 6 cut(s) 77, 164, 599, 729, 930, 1309
BceAI ACGGC 1 cut(s) 1173
BclI TGATCA 1 cut(s) 850
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 1 cut(s) 1032
BfmI CTRYAG 1 cut(s) 1340
BfoI RGCGCY 1 cut(s) 1082
BfuAI ACCTGC 1 cut(s) 984
BglII AGATCT 2 cut(s) 737, 825
BisI GCNGC 9 cut(s) 28, 457, 491, 642, 872, 944, 959, 1286, 1343
BlnI CCTAGG 1 cut(s) 1031
BlsI GCNGC 9 cut(s) 29, 458, 492, 643, 873, 945, 960, 1287, 1344
BmeRI GACNNNNNGTC 1 cut(s) 1240
BmeT110I CYCGRG 1 cut(s) 460
BmgBI CACGTC 1 cut(s) 581
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 3 cut(s) 78, 254, 1080
BmrI ACTGGG 1 cut(s) 389
BmsI GCATC 1 cut(s) 187
BmuI ACTGGG 1 cut(s) 389
BpiI GAAGAC 1 cut(s) 583
BpmI CTGGAG 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 1125
BsaBI GATNNNNATC 1 cut(s) 849
BsaHI GRCGYC 1 cut(s) 1079
BsaJI CCNNGG 2 cut(s) 1031, 1155
BsaXI ACNNNNNCTCC 3 cut(s) 30, 456, 486
Bsc4I CCNNNNNNNGG 4 cut(s) 1032, 1103, 1141, 1365
Bse1I ACTGG 7 cut(s) 10, 193, 234, 256, 308, 395, 712
Bse3DI GCAATG 2 cut(s) 589, 682
Bse8I GATNNNNATC 1 cut(s) 849
BseCI ATCGAT 1 cut(s) 1125
BseDI CCNNGG 2 cut(s) 1031, 1155
BseGI GGATG 4 cut(s) 159, 178, 721, 1093
BseJI GATNNNNATC 1 cut(s) 849
BseLI CCNNNNNNNGG 4 cut(s) 1032, 1103, 1141, 1365
BseMI GCAATG 2 cut(s) 589, 682
BseMII CTCAG 4 cut(s) 267, 383, 798, 858
BseNI ACTGG 7 cut(s) 10, 193, 234, 256, 308, 395, 712
BseRI GAGGAG 2 cut(s) 824, 1325
BseXI GCAGC 8 cut(s) 39, 443, 653, 858, 945, 955, 1297, 1354
BseYI CCCAGC 1 cut(s) 594
BsgI GTGCAG 1 cut(s) 1001
BshFI GGCC 2 cut(s) 328, 490
BshNI GGYRCC 1 cut(s) 1078
BshVI ATCGAT 1 cut(s) 1125
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 1 cut(s) 208
BslFI GGGAC 2 cut(s) 999, 1247
BslI CCNNNNNNNGG 4 cut(s) 1032, 1103, 1141, 1365
BsmAI GTCTC 1 cut(s) 3
BsmBI CGTCTC 1 cut(s) 3
BsmFI GGGAC 2 cut(s) 999, 1247
BsnI GGCC 2 cut(s) 328, 490
BsoBI CYCGRG 1 cut(s) 460
Bsp1407I TGTACA 2 cut(s) 333, 1090
Bsp143I GATC 8 cut(s) 343, 737, 825, 844, 850, 1126, 1150, 1271
BspACI CCGC 4 cut(s) 137, 250, 491, 903
BspANI GGCC 2 cut(s) 328, 490
BspCNI CTCAG 4 cut(s) 268, 382, 799, 859
BspDI ATCGAT 1 cut(s) 1125
BspLI GGNNCC 3 cut(s) 78, 254, 1080
BspMAI CTGCAG 1 cut(s) 1344
BspMI ACCTGC 1 cut(s) 984
BspPI GGATC 4 cut(s) 338, 839, 1121, 1145
BspT107I GGYRCC 1 cut(s) 1078
BsrDI GCAATG 2 cut(s) 589, 682
BsrGI TGTACA 2 cut(s) 333, 1090
BsrI ACTGG 7 cut(s) 10, 193, 234, 256, 308, 395, 712
BssECI CCNNGG 2 cut(s) 1031, 1155
BssMI GATC 8 cut(s) 343, 737, 825, 844, 850, 1126, 1150, 1271
BssNI GRCGYC 1 cut(s) 1079
BssT1I CCWWGG 1 cut(s) 1031
Bst4CI ACNGT 2 cut(s) 338, 686
Bst6I CTCTTC 1 cut(s) 999
BstACI GRCGYC 1 cut(s) 1079
BstAPI GCANNNNNTGC 3 cut(s) 647, 988, 1291
BstAUI TGTACA 2 cut(s) 333, 1090
BstC8I GCNNGC 2 cut(s) 360, 488
BstDEI CTNAG 6 cut(s) 276, 369, 530, 807, 829, 867
BstDSI CCRYGG 1 cut(s) 1155
BstENI CCTNNNNNAGG 1 cut(s) 1030
BstF5I GGATG 4 cut(s) 159, 178, 721, 1093
BstH2I RGCGCY 1 cut(s) 1082
BstHHI GCGC 2 cut(s) 993, 1081
BstKTI GATC 8 cut(s) 346, 740, 828, 847, 853, 1129, 1153, 1274
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 8 cut(s) 343, 737, 825, 844, 850, 1126, 1150, 1271
BstMWI GCNNNNNNNGC 3 cut(s) 647, 988, 1291
BstNSI RCATGY 2 cut(s) 362, 958
BstSFI CTRYAG 1 cut(s) 1340
BstV1I GCAGC 8 cut(s) 39, 443, 653, 858, 945, 955, 1297, 1354
BstV2I GAAGAC 1 cut(s) 583
BstX2I RGATCY 2 cut(s) 737, 825
BstYI RGATCY 2 cut(s) 737, 825
Bsu15I ATCGAT 1 cut(s) 1125
BsuRI GGCC 2 cut(s) 328, 490
BsuTUI ATCGAT 1 cut(s) 1125
BtgI CCRYGG 1 cut(s) 1155
BtgZI GCGATG 1 cut(s) 45
BtrI CACGTC 1 cut(s) 581
BtsCI GGATG 4 cut(s) 159, 178, 721, 1093
BtsIMutI CAGTG 3 cut(s) 227, 343, 402
BveI ACCTGC 1 cut(s) 984
Cac8I GCNNGC 2 cut(s) 360, 488
CaiI CAGNNNCTG 2 cut(s) 988, 1291
CfoI GCGC 2 cut(s) 993, 1081
Cfr13I GGNCC 1 cut(s) 326
ClaI ATCGAT 1 cut(s) 1125
Csp6I GTAC 3 cut(s) 334, 1091, 1163
CviAII CATG 4 cut(s) 37, 359, 955, 1042
CviQI GTAC 3 cut(s) 334, 1091, 1163
DdeI CTNAG 6 cut(s) 276, 369, 530, 807, 829, 867
DinI GGCGCC 1 cut(s) 1080
DpnI GATC 8 cut(s) 345, 739, 827, 846, 852, 1128, 1152, 1273
DpnII GATC 8 cut(s) 343, 737, 825, 844, 850, 1126, 1150, 1271
DraI TTTAAA 1 cut(s) 148
DriI GACNNNNNGTC 1 cut(s) 1240
EaeI YGGCCR 1 cut(s) 488
Eam1104I CTCTTC 1 cut(s) 999
Eam1105I GACNNNNNGTC 1 cut(s) 1240
EarI CTCTTC 1 cut(s) 999
Eco130I CCWWGG 1 cut(s) 1031
Eco57I CTGAAG 1 cut(s) 768
Eco88I CYCGRG 1 cut(s) 460
EcoNI CCTNNNNNAGG 1 cut(s) 1030
EcoT14I CCWWGG 1 cut(s) 1031
EcoT22I ATGCAT 1 cut(s) 364
EgeI GGCGCC 1 cut(s) 1080
EheI GGCGCC 1 cut(s) 1080
ErhI CCWWGG 1 cut(s) 1031
Esp3I CGTCTC 1 cut(s) 3
FaeI CATG 4 cut(s) 40, 362, 958, 1045
FalI AAGNNNNNCTT 1 cut(s) 1343
FaqI GGGAC 2 cut(s) 999, 1247
FatI CATG 4 cut(s) 36, 358, 954, 1041
FauNDI CATATG 3 cut(s) 133, 364, 1059
FbaI TGATCA 1 cut(s) 850
Fnu4HI GCNGC 9 cut(s) 28, 457, 491, 642, 872, 944, 959, 1286, 1343
FokI GGATG 4 cut(s) 165, 166, 708, 1080
Fsp4HI GCNGC 9 cut(s) 28, 457, 491, 642, 872, 944, 959, 1286, 1343
FspBI CTAG 1 cut(s) 1032
FspI TGCGCA 1 cut(s) 992
GlaI GCGC 2 cut(s) 992, 1080
GluI GCNGC 9 cut(s) 28, 457, 491, 642, 872, 944, 959, 1286, 1343
GsaI CCCAGC 1 cut(s) 598
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 1082
HaeIII GGCC 2 cut(s) 328, 490
HapII CCGG 1 cut(s) 208
HhaI GCGC 2 cut(s) 993, 1081
Hin1I GRCGYC 1 cut(s) 1079
Hin1II CATG 4 cut(s) 40, 362, 958, 1045
Hin6I GCGC 2 cut(s) 991, 1079
HinP1I GCGC 2 cut(s) 991, 1079
HinfI GANTC 2 cut(s) 787, 838
HpaII CCGG 1 cut(s) 208
HphI GGTGA 2 cut(s) 304, 382
Hpy166II GTNNAC 3 cut(s) 112, 334, 1091
Hpy188I TCNGA 5 cut(s) 277, 372, 433, 868, 1271
Hpy188III TCNNGA 6 cut(s) 80, 462, 791, 842, 848, 966
Hpy8I GTNNAC 3 cut(s) 112, 334, 1091
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 2 cut(s) 357, 612
HpyCH4III ACNGT 2 cut(s) 338, 686
HpyCH4IV ACGT 2 cut(s) 580, 1241
HpyCH4V TGCA 6 cut(s) 362, 961, 982, 1285, 1305, 1342
HpyF10VI GCNNNNNNNGC 3 cut(s) 647, 988, 1291
HpyF3I CTNAG 6 cut(s) 276, 369, 530, 807, 829, 867
HpySE526I ACGT 2 cut(s) 580, 1241
Hsp92I GRCGYC 1 cut(s) 1079
Hsp92II CATG 4 cut(s) 40, 362, 958, 1045
HspAI GCGC 2 cut(s) 991, 1079
KasI GGCGCC 1 cut(s) 1078
Ksp22I TGATCA 1 cut(s) 850
Kzo9I GATC 8 cut(s) 343, 737, 825, 844, 850, 1126, 1150, 1271
LmnI GCTCC 3 cut(s) 406, 464, 940
Lsp1109I GCAGC 8 cut(s) 39, 443, 653, 858, 945, 955, 1297, 1354
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 1032
MaeII ACGT 2 cut(s) 580, 1241
MaeIII GTNAC 2 cut(s) 551, 1242
MalI GATC 8 cut(s) 345, 739, 827, 846, 852, 1128, 1152, 1273
MboI GATC 8 cut(s) 343, 737, 825, 844, 850, 1126, 1150, 1271
MboII GAAGA 4 cut(s) 588, 909, 1016, 1363
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 2 cut(s) 737, 825
MluCI AATT 5 cut(s) 286, 501, 776, 907, 1145
Mly113I GGCGCC 1 cut(s) 1079
MlyI GAGTC 1 cut(s) 796
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 5 cut(s) 90, 147, 924, 1073, 1208
MslI CAYNNNNRTG 2 cut(s) 363, 395
MspA1I CMGCKG 1 cut(s) 946
MspI CCGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 647, 988, 1291
NarI GGCGCC 1 cut(s) 1079
NdeI CATATG 3 cut(s) 133, 364, 1059
NdeII GATC 8 cut(s) 343, 737, 825, 844, 850, 1126, 1150, 1271
NlaIII CATG 4 cut(s) 40, 362, 958, 1045
NlaIV GGNNCC 3 cut(s) 78, 254, 1080
NmuCI GTSAC 2 cut(s) 551, 1242
NsbI TGCGCA 1 cut(s) 992
NsiI ATGCAT 1 cut(s) 364
NspI RCATGY 2 cut(s) 362, 958
OliI CACNNNNGTG 1 cut(s) 395
PaeI GCATGC 1 cut(s) 362
PaqCI CACCTGC 1 cut(s) 984
PfeI GAWTC 1 cut(s) 838
PkrI GCNGC 9 cut(s) 29, 458, 492, 643, 873, 945, 960, 1287, 1344
PleI GAGTC 1 cut(s) 795
PluTI GGCGCC 1 cut(s) 1082
PpsI GAGTC 1 cut(s) 795
PshBI ATTAAT 1 cut(s) 924
PspFI CCCAGC 1 cut(s) 594
PspN4I GGNNCC 3 cut(s) 78, 254, 1080
PspPI GGNCC 1 cut(s) 326
PstI CTGCAG 1 cut(s) 1344
PstNI CAGNNNCTG 2 cut(s) 988, 1291
PsuI RGATCY 2 cut(s) 737, 825
PvuII CAGCTG 1 cut(s) 946
RsaI GTAC 3 cut(s) 335, 1092, 1164
RsaNI GTAC 3 cut(s) 334, 1091, 1163
RseI CAYNNNNRTG 2 cut(s) 363, 395
SaqAI TTAA 5 cut(s) 90, 147, 924, 1073, 1208
SatI GCNGC 9 cut(s) 28, 457, 491, 642, 872, 944, 959, 1286, 1343
Sau3AI GATC 8 cut(s) 343, 737, 825, 844, 850, 1126, 1150, 1271
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 1 cut(s) 796
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 1340
SfoI GGCGCC 1 cut(s) 1080
SmiMI CAYNNNNRTG 2 cut(s) 363, 395
SphI GCATGC 1 cut(s) 362
Sse9I AATT 5 cut(s) 286, 501, 776, 907, 1145
SsiI CCGC 4 cut(s) 137, 250, 491, 903
SspDI GGCGCC 1 cut(s) 1078
SspI AATATT 1 cut(s) 1198
SspMI CTAG 1 cut(s) 1032
StyI CCWWGG 1 cut(s) 1031
TaaI ACNGT 2 cut(s) 338, 686
TaiI ACGT 2 cut(s) 583, 1244
TaqI TCGA 3 cut(s) 417, 1125, 1349
TasI AATT 5 cut(s) 286, 501, 776, 907, 1145
TatI WGTACW 2 cut(s) 333, 1090
TauI GCSGC 1 cut(s) 493
TfiI GAWTC 1 cut(s) 838
Tru1I TTAA 5 cut(s) 90, 147, 924, 1073, 1208
Tru9I TTAA 5 cut(s) 90, 147, 924, 1073, 1208
TscAI CASTG 3 cut(s) 234, 343, 402
TseFI GTSAC 2 cut(s) 551, 1242
TseI GCWGC 8 cut(s) 27, 456, 641, 871, 943, 958, 1285, 1342
Tsp45I GTSAC 2 cut(s) 551, 1242
TspDTI ATGAA 7 cut(s) 69, 578, 645, 693, 834, 1076, 1314
TspGWI ACGGA 1 cut(s) 714
TspRI CASTG 3 cut(s) 234, 343, 402
VspI ATTAAT 1 cut(s) 924
XagI CCTNNNNNAGG 1 cut(s) 1030
XapI RAATTY 2 cut(s) 286, 1145
XceI RCATGY 2 cut(s) 362, 958
XmaJI CCTAGG 1 cut(s) 1031
XspI CTAG 1 cut(s) 1032
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.