Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005779

Physical Location & Seq

Genomic Coordinates Reverse (-)

12494386 .. 12500224

Gene Structure 5839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG152000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGGCTCCCAAAAACCAATGTTTCCTCAACATTCCTGGTTTGATTTTCACGATTCTTTCCGGCTTGTTCATCACAGACCCTTTAACACCAAAGCTTAACGGCGAGCCTCTTCCACCACCACCACAGCTCAATCCACCGTCCACGTGTCCTCAGAACCCAGCCGATCCCCGACCGCACCCTCGCCGACCCCCAATTGGTGCCGAAGGATCCTCTCGCCGGCGCCGCGAAATCCCGAGATCTCAAAAGGTACTCAGGTCAAGAATGCCTGGACACGAAGTTGCCAAAGATGACATGATGATCGATGAGTATGAACAGAAGCAAGTGAATGCTGTTCCTGATGGATTTAACTCTCAGTATCTCAAAATTTACTATGGAAAGCTCTTCCCATATGAGGAAATGTTTAAATGGATGTCCTATGCAAATGATGGCAAGCATCCTGCATGCAACCAGTCCTACTTTGGCCGGAGAGAGTTTTCTTTCACACTGGATAATGATGTTTATCTGCGGTACAAAACTTTCAACTCCGTGTCTGAGCTTGAAAATTCTATCAAAGAGAAGTGCCCCGTCAAAATAGATATTGGGCCTGTGTACAATGTTGATCCTGCAAAGAGGCATTCCTATGCTCAAAGTGGTTGCTACCCCGAGGAGAGGGAACTGATTTTTGATATAGATATGTCAGATTACGATGATGTTAGATACTGCTGCTCAGGAGCTGATGTGTGCCTGGAGTGCTGGCCGCTTATGACAATTGCTATCAAAGTGATTGACACTGCCCTTCGAGATGACTTTGGTTTCAATCACATTCTCTGGGTATATAGTGGCCGACGTGGTGTTCATTGTTGGGTTTGTGATGGGAAAGCTAGAAGGCTCACAAATGAACTGAGAACAGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAACGAAAACAGTCATAAAAAGGTTTCTTTGATGGGCCCTGCTCTTCATCCATTCCTTGTGAGATCATATACTGAAGTTCTTAAGGATTTCTTTGAGAGGACATTGCTTTCCAGTCAAAAGATATTTTCTACTGCAGAGAGATATGAAAAGATCTTAGATATGATTCCTGATGAATCTGTCACTTCTGAGCTTCGGGGAAAGTGGCAAGATAATAGACGAACCTCCAATGCAAAAGAAGACATTAATGTTGCTCGTTGGGAGCAGCTGAAACATTTGCTGCAATCTGGGAAACAGAAGATGCAAGGACTGCGTAGATGTGTGGAGGAGATTGTGTTCTCATATACCTACCCTAGACTTGACATGGAGGTTTCAAAACATATGAACCATTTATTAAAGGCACCATTCTGTGTACATCCAAAGACAGGTCGTGTTTGTGTTCCAATTGATCCCAACCGTTGTGAGGATTTTGATCCTACTGCAGTTCCAACCCTTTCCACTCTTATAGAAGAACTTAATAATGAGGGTTTGAGAGCAGAGGCTGATAACGACCGGGATAGAACGTCACTTGGAAAATCAATAAGATTCTTCCAATCATCATTTTTGGAGCCTTTGGTAAAATCTTGCAAGGAGGAGATGATAAGTTCCTACAATGCAAAACTGCAGCAGTCGAAGTTGCAGCAGTCAAAGAACGTGATTGCTGCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

542

Amino Acids

62.44

Weight (kDa)

8.21

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	221 - 456	7.8e-54	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41880
fragaria_vesca	FvH4_5g04460
malus_domestica	MD06G1105400.v1.1
prunus_persica	Prupe.5G117700_v2.0.a1
pyrus_communis	pycom06g09970
rosa_chinensis	RchiOBHm_Chr7g0195041
rosa_laevigata	RLG00000004150 RLG00000008501 RLG00000015305
rosa_multiflora	Rmu_sc0002246.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260810
rosa_rugosa	Rorug07G0020100 Rorug07G0020200
rosa_samantha	Rh6BG025100 Rh6BG025600 Rh6BG025700 Rh6BG026500 Rh6BG026600 Rh6CG024600 Rh6DG024100 Rh6DG024400 Rh7AG147700 Rh7BG148300 Rh7CG152000
rosa_wichuraiana	Rw2G021680 Rw5G042100 Rw6G002490 Rw7G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	197, 219, 1318
AccI	GTMKAC	1 cut(s)	912
AccII	CGCG	1 cut(s)	225
AciI	CCGC	4 cut(s)	173, 223, 505, 737
AclWI	GGATC	6 cut(s)	158, 201, 214, 593, 1361, 1385
AcoI	YGGCCR	3 cut(s)	460, 734, 820
AcsI	RAATTY	2 cut(s)	363, 541
AcuI	CTGAAG	1 cut(s)	1014
AcvI	CACGTG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	4 cut(s)	249, 509, 590, 1332
AfiI	CCNNNNNNNGG	6 cut(s)	194, 216, 391, 648, 1343, 1381
AflII	CTTAAG	1 cut(s)	1001
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	520, 539, 796, 1293
AjiI	CACGTC	1 cut(s)	827
AjnI	CCWGG	3 cut(s)	34, 265, 723
AloI	GAACNNNNNNTCC	2 cut(s)	1238, 1270
AluBI	AGCT	9 cut(s)	94, 127, 379, 535, 713, 860, 890, 1111, 1186
AluI	AGCT	9 cut(s)	94, 127, 379, 535, 713, 860, 890, 1111, 1186
AlwI	GGATC	6 cut(s)	158, 201, 214, 593, 1361, 1385
AlwNI	CAGNNNCTG	2 cut(s)	713, 1460
Ama87I	CYCGRG	2 cut(s)	232, 641
AoxI	GGCC	5 cut(s)	460, 581, 734, 820, 955
ApaI	GGGCCC	1 cut(s)	959
ApeKI	GCWGC	6 cut(s)	702, 1183, 1198, 1582, 1597, 1619
ApoI	RAATTY	2 cut(s)	363, 541
AseI	ATTAAT	1 cut(s)	1164
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	3 cut(s)	581, 955, 956
AsuC2I	CCSGG	1 cut(s)	1472
AvaI	CYCGRG	2 cut(s)	232, 641
BaeGI	GKGCMC	2 cut(s)	563, 959
BaeI	ACNNNNGTAYC	2 cut(s)	239, 272
BamHI	GGATCC	1 cut(s)	206
BanI	GGYRCC	3 cut(s)	197, 219, 1318
BanII	GRGCYC	1 cut(s)	959
BbrPI	CACGTG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	1164
BbvI	GCAGC	6 cut(s)	689, 1185, 1195, 1594, 1606, 1609
BccI	CCATC	4 cut(s)	332, 419, 845, 946
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	3 cut(s)	36, 267, 725
BcnI	CCSGG	1 cut(s)	1472
BfaI	CTAG	3 cut(s)	861, 1272, 1627
BfmI	CTRYAG	3 cut(s)	1053, 1398, 1580
BfoI	RGCGCY	1 cut(s)	223
BfrI	CTTAAG	1 cut(s)	1001
BglII	AGATCT	2 cut(s)	236, 1071
BisI	GCNGC	8 cut(s)	223, 703, 737, 1184, 1199, 1583, 1598, 1620
BlsI	GCNGC	8 cut(s)	224, 704, 738, 1185, 1200, 1584, 1599, 1621
Bme1390I	CCNGG	4 cut(s)	36, 267, 725, 1472
BmeT110I	CYCGRG	2 cut(s)	232, 641
BmgBI	CACGTC	1 cut(s)	827
BmgT120I	GGNCC	3 cut(s)	581, 955, 956
BmiI	GGNNCC	7 cut(s)	6, 199, 208, 221, 957, 1320, 1527
BmrFI	CCNGG	4 cut(s)	36, 267, 725, 1472
BmsI	GCATC	2 cut(s)	442, 1209
BpiI	GAAGAC	1 cut(s)	1164
BpmI	CTGGAG	1 cut(s)	746
Bpu10I	CCTNAGC	1 cut(s)	706
BpuMI	CCSGG	1 cut(s)	1472
Bsa29I	ATCGAT	1 cut(s)	300
BsaAI	YACGTR	1 cut(s)	144
BsaBI	GATNNNNATC	2 cut(s)	498, 1389
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	642
BsaXI	ACNNNNNCTCC	4 cut(s)	702, 732, 1238, 1268
Bsc4I	CCNNNNNNNGG	6 cut(s)	194, 216, 391, 648, 1343, 1381
Bse118I	RCCGGY	1 cut(s)	216
Bse1I	ACTGG	3 cut(s)	448, 489, 1032
Bse3DI	GCAATG	1 cut(s)	1022
Bse8I	GATNNNNATC	2 cut(s)	498, 1389
BseBI	CCWGG	3 cut(s)	36, 267, 725
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	4 cut(s)	414, 433, 967, 1333
BseJI	GATNNNNATC	2 cut(s)	498, 1389
BseLI	CCNNNNNNNGG	6 cut(s)	194, 216, 391, 648, 1343, 1381
BseMI	GCAATG	1 cut(s)	1022
BseMII	CTCAG	7 cut(s)	164, 265, 365, 522, 720, 872, 1098
BseNI	ACTGG	3 cut(s)	448, 489, 1032
BseRI	GAGGAG	3 cut(s)	659, 1259, 1565
BseSI	GKGCMC	2 cut(s)	563, 959
BseXI	GCAGC	6 cut(s)	689, 1185, 1195, 1594, 1606, 1609
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	2 cut(s)	173, 1471
BshFI	GGCC	5 cut(s)	462, 583, 736, 822, 957
BshNI	GGYRCC	3 cut(s)	197, 219, 1318
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	2 cut(s)	173, 1471
BsiHKCI	CYCGRG	2 cut(s)	232, 641
BsiSI	CCGG	4 cut(s)	60, 217, 463, 1471
BslI	CCNNNNNNNGG	6 cut(s)	194, 216, 391, 648, 1343, 1381
BsmI	GAATGC	3 cut(s)	267, 331, 613
BsnI	GGCC	5 cut(s)	462, 583, 736, 822, 957
BsoBI	CYCGRG	2 cut(s)	232, 641
Bsp120I	GGGCCC	1 cut(s)	955
Bsp1286I	GDGCHC	2 cut(s)	563, 959
Bsp1407I	TGTACA	2 cut(s)	588, 1330
Bsp143I	GATC	9 cut(s)	163, 206, 236, 297, 598, 983, 1071, 1366, 1390
BspACI	CCGC	4 cut(s)	173, 223, 505, 737
BspANI	GGCC	5 cut(s)	462, 583, 736, 822, 957
BspCNI	CTCAG	7 cut(s)	163, 264, 364, 523, 719, 873, 1099
BspDI	ATCGAT	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	7 cut(s)	6, 199, 208, 221, 957, 1320, 1527
BspMAI	CTGCAG	3 cut(s)	1057, 1402, 1584
BspPI	GGATC	6 cut(s)	158, 201, 214, 593, 1361, 1385
BspQI	GCTCTTC	2 cut(s)	386, 969
BspT107I	GGYRCC	3 cut(s)	197, 219, 1318
BspTI	CTTAAG	1 cut(s)	1001
BsrDI	GCAATG	1 cut(s)	1022
BsrFI	RCCGGY	1 cut(s)	216
BsrGI	TGTACA	2 cut(s)	588, 1330
BsrI	ACTGG	3 cut(s)	448, 489, 1032
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	642
BssMI	GATC	9 cut(s)	163, 206, 236, 297, 598, 983, 1071, 1366, 1390
BssNI	GRCGYC	1 cut(s)	220
Bst2UI	CCWGG	3 cut(s)	36, 267, 725
Bst4CI	ACNGT	3 cut(s)	138, 932, 1376
Bst6I	CTCTTC	3 cut(s)	114, 386, 969
BstACI	GRCGYC	1 cut(s)	220
BstAFI	CTTAAG	1 cut(s)	1001
BstAPI	GCANNNNNTGC	1 cut(s)	1228
BstAUI	TGTACA	2 cut(s)	588, 1330
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	5 cut(s)	104, 218, 431, 442, 734
BstDEI	CTNAG	8 cut(s)	150, 251, 351, 531, 706, 881, 1075, 1107
BstF5I	GGATG	4 cut(s)	414, 433, 967, 1333
BstFNI	CGCG	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	9 cut(s)	166, 209, 239, 300, 601, 986, 1074, 1369, 1393
BstMBI	GATC	9 cut(s)	163, 206, 236, 297, 598, 983, 1071, 1366, 1390
BstMCI	CGRYCG	2 cut(s)	173, 1471
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 729, 1228
BstNI	CCWGG	3 cut(s)	36, 267, 725
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	4 cut(s)	34, 265, 723, 1470
BstSFI	CTRYAG	3 cut(s)	1053, 1398, 1580
BstSLI	GKGCMC	2 cut(s)	563, 959
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	6 cut(s)	689, 1185, 1195, 1594, 1606, 1609
BstV2I	GAAGAC	1 cut(s)	1164
BstX2I	RGATCY	3 cut(s)	206, 236, 1071
BstYI	RGATCY	3 cut(s)	206, 236, 1071
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	5 cut(s)	462, 583, 736, 822, 957
BsuTUI	ATCGAT	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	827
BtsCI	GGATG	4 cut(s)	414, 433, 967, 1333
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	2 cut(s)	482, 768
Cac8I	GCNNGC	5 cut(s)	104, 218, 431, 442, 734
CaiI	CAGNNNCTG	2 cut(s)	713, 1460
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	3 cut(s)	581, 955, 956
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	4 cut(s)	248, 508, 589, 1331
CviAII	CATG	3 cut(s)	292, 441, 1282
CviQI	GTAC	4 cut(s)	248, 508, 589, 1331
DdeI	CTNAG	8 cut(s)	150, 251, 351, 531, 706, 881, 1075, 1107
DinI	GGCGCC	1 cut(s)	221
DpnI	GATC	9 cut(s)	165, 208, 238, 299, 600, 985, 1073, 1368, 1392
DpnII	GATC	9 cut(s)	163, 206, 236, 297, 598, 983, 1071, 1366, 1390
DraI	TTTAAA	1 cut(s)	403
EaeI	YGGCCR	3 cut(s)	460, 734, 820
Eam1104I	CTCTTC	3 cut(s)	114, 386, 969
EarI	CTCTTC	3 cut(s)	114, 386, 969
Eco24I	GRGCYC	1 cut(s)	959
Eco57I	CTGAAG	1 cut(s)	1014
Eco72I	CACGTG	1 cut(s)	144
Eco88I	CYCGRG	2 cut(s)	232, 641
EcoO109I	RGGNCCY	1 cut(s)	956
EcoRII	CCWGG	3 cut(s)	34, 265, 723
EcoT38I	GRGCYC	1 cut(s)	959
EgeI	GGCGCC	1 cut(s)	221
EheI	GGCGCC	1 cut(s)	221
FaeI	CATG	3 cut(s)	295, 444, 1285
FalI	AAGNNNNNCTT	2 cut(s)	995, 1027
FatI	CATG	3 cut(s)	291, 440, 1281
FauNDI	CATATG	2 cut(s)	388, 1299
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	8 cut(s)	223, 703, 737, 1184, 1199, 1583, 1598, 1620
FokI	GGATG	4 cut(s)	420, 421, 954, 1320
FriOI	GRGCYC	1 cut(s)	959
Fsp4HI	GCNGC	8 cut(s)	223, 703, 737, 1184, 1199, 1583, 1598, 1620
FspBI	CTAG	3 cut(s)	861, 1272, 1627
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	8 cut(s)	223, 703, 737, 1184, 1199, 1583, 1598, 1620
GsaI	CCCAGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	746
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	5 cut(s)	462, 583, 736, 822, 957
HapII	CCGG	4 cut(s)	60, 217, 463, 1471
HhaI	GCGC	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	295, 444, 1285
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	4 cut(s)	52, 1084, 1094, 1503
HpaII	CCGG	4 cut(s)	60, 217, 463, 1471
Hpy166II	GTNNAC	4 cut(s)	141, 589, 913, 1331
Hpy188I	TCNGA	4 cut(s)	153, 532, 679, 1108
Hpy188III	TCNNGA	7 cut(s)	49, 232, 258, 335, 708, 779, 1088
Hpy8I	GTNNAC	4 cut(s)	141, 589, 913, 1331
Hpy99I	CGWCG	1 cut(s)	828
HpyAV	CCTTC	3 cut(s)	197, 785, 858
HpyCH4III	ACNGT	3 cut(s)	138, 932, 1376
HpyCH4IV	ACGT	4 cut(s)	143, 826, 1481, 1611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 729, 1228
HpyF3I	CTNAG	8 cut(s)	150, 251, 351, 531, 706, 881, 1075, 1107
HpySE526I	ACGT	4 cut(s)	143, 826, 1481, 1611
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	3 cut(s)	295, 444, 1285
HspAI	GCGC	1 cut(s)	220
KasI	GGCGCC	1 cut(s)	219
KroI	GCCGGC	1 cut(s)	216
KroNI	GCCGGC	1 cut(s)	218
Kzo9I	GATC	9 cut(s)	163, 206, 236, 297, 598, 983, 1071, 1366, 1390
LguI	GCTCTTC	2 cut(s)	386, 969
LmnI	GCTCC	4 cut(s)	10, 710, 1180, 1525
Lsp1109I	GCAGC	6 cut(s)	689, 1185, 1195, 1594, 1606, 1609
LweI	GCATC	2 cut(s)	442, 1209
MaeI	CTAG	3 cut(s)	861, 1272, 1627
MaeII	ACGT	4 cut(s)	143, 826, 1481, 1611
MaeIII	GTNAC	2 cut(s)	1099, 1482
MalI	GATC	9 cut(s)	165, 208, 238, 299, 600, 985, 1073, 1368, 1392
MboI	GATC	9 cut(s)	163, 206, 236, 297, 598, 983, 1071, 1366, 1390
MboII	GAAGA	7 cut(s)	101, 373, 956, 1169, 1228, 1439, 1498
MfeI	CAATTG	3 cut(s)	192, 747, 1362
MflI	RGATCY	3 cut(s)	206, 236, 1071
MhlI	GDGCHC	2 cut(s)	563, 959
MluCI	AATT	5 cut(s)	192, 363, 541, 747, 1362
Mly113I	GGCGCC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	1430
MreI	CGCCGGCG	1 cut(s)	216
MroNI	GCCGGC	1 cut(s)	216
MseI	TTAA	8 cut(s)	83, 96, 345, 402, 1002, 1164, 1313, 1434
MslI	CAYNNNNRTG	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	1186
MspCI	CTTAAG	1 cut(s)	1001
MspI	CCGG	4 cut(s)	60, 217, 463, 1471
MspR9I	CCNGG	4 cut(s)	36, 267, 725, 1472
MunI	CAATTG	3 cut(s)	192, 747, 1362
Mva1269I	GAATGC	3 cut(s)	267, 331, 613
MvaI	CCWGG	3 cut(s)	36, 267, 725
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	222, 729, 1228
NaeI	GCCGGC	1 cut(s)	218
NarI	GGCGCC	1 cut(s)	220
NciI	CCSGG	1 cut(s)	1472
NdeI	CATATG	2 cut(s)	388, 1299
NdeII	GATC	9 cut(s)	163, 206, 236, 297, 598, 983, 1071, 1366, 1390
NgoMIV	GCCGGC	1 cut(s)	216
NlaIII	CATG	3 cut(s)	295, 444, 1285
NlaIV	GGNNCC	7 cut(s)	6, 199, 208, 221, 957, 1320, 1527
NmuCI	GTSAC	2 cut(s)	1099, 1482
NspI	RCATGY	1 cut(s)	444
PaeI	GCATGC	1 cut(s)	444
PciSI	GCTCTTC	2 cut(s)	386, 969
PctI	GAATGC	3 cut(s)	267, 331, 613
PdiI	GCCGGC	1 cut(s)	218
PfeI	GAWTC	4 cut(s)	52, 1084, 1094, 1503
PkrI	GCNGC	8 cut(s)	224, 704, 738, 1185, 1200, 1584, 1599, 1621
PluTI	GGCGCC	1 cut(s)	223
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	144
PshBI	ATTAAT	1 cut(s)	1164
Psp6I	CCWGG	3 cut(s)	34, 265, 723
PspCI	CACGTG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	3 cut(s)	34, 265, 723
PspN4I	GGNNCC	7 cut(s)	6, 199, 208, 221, 957, 1320, 1527
PspOMI	GGGCCC	1 cut(s)	955
PspPI	GGNCC	3 cut(s)	581, 955, 956
PstI	CTGCAG	3 cut(s)	1057, 1402, 1584
PstNI	CAGNNNCTG	2 cut(s)	713, 1460
PsuI	RGATCY	3 cut(s)	206, 236, 1071
PvuII	CAGCTG	1 cut(s)	1186
RsaI	GTAC	4 cut(s)	249, 509, 590, 1332
RsaNI	GTAC	4 cut(s)	248, 508, 589, 1331
RseI	CAYNNNNRTG	1 cut(s)	618
SapI	GCTCTTC	2 cut(s)	386, 969
SaqAI	TTAA	8 cut(s)	83, 96, 345, 402, 1002, 1164, 1313, 1434
SatI	GCNGC	8 cut(s)	223, 703, 737, 1184, 1199, 1583, 1598, 1620
Sau3AI	GATC	9 cut(s)	163, 206, 236, 297, 598, 983, 1071, 1366, 1390
Sau96I	GGNCC	3 cut(s)	581, 955, 956
ScrFI	CCNGG	4 cut(s)	36, 267, 725, 1472
SduI	GDGCHC	2 cut(s)	563, 959
SfaNI	GCATC	2 cut(s)	442, 1209
SfcI	CTRYAG	3 cut(s)	1053, 1398, 1580
SfoI	GGCGCC	1 cut(s)	221
SgrAI	CRCCGGYG	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	1 cut(s)	1001
SmoI	CTYRAG	1 cut(s)	1001
SphI	GCATGC	1 cut(s)	444
Sse9I	AATT	5 cut(s)	192, 363, 541, 747, 1362
SsiI	CCGC	4 cut(s)	173, 223, 505, 737
SspDI	GGCGCC	1 cut(s)	219
SspMI	CTAG	3 cut(s)	861, 1272, 1627
StyD4I	CCNGG	4 cut(s)	34, 265, 723, 1470
TaaI	ACNGT	3 cut(s)	138, 932, 1376
TaiI	ACGT	4 cut(s)	146, 829, 1484, 1614
TaqI	TCGA	3 cut(s)	300, 778, 1589
TasI	AATT	5 cut(s)	192, 363, 541, 747, 1362
TatI	WGTACW	2 cut(s)	588, 1330
TauI	GCSGC	2 cut(s)	225, 739
TfiI	GAWTC	4 cut(s)	52, 1084, 1094, 1503
Tru1I	TTAA	8 cut(s)	83, 96, 345, 402, 1002, 1164, 1313, 1434
Tru9I	TTAA	8 cut(s)	83, 96, 345, 402, 1002, 1164, 1313, 1434
TscAI	CASTG	2 cut(s)	489, 775
TseFI	GTSAC	2 cut(s)	1099, 1482
TseI	GCWGC	6 cut(s)	702, 1183, 1198, 1582, 1597, 1619
Tsp45I	GTSAC	2 cut(s)	1099, 1482
TspDTI	ATGAA	8 cut(s)	58, 324, 824, 891, 956, 1080, 1107, 1316
TspGWI	ACGGA	1 cut(s)	514
TspRI	CASTG	2 cut(s)	489, 775
Vha464I	CTTAAG	1 cut(s)	1001
VspI	ATTAAT	1 cut(s)	1164
XapI	RAATTY	2 cut(s)	363, 541
XceI	RCATGY	1 cut(s)	444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	912
XspI	CTAG	3 cut(s)	861, 1272, 1627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.