Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005779

Physical Location & Seq

Genomic Coordinates Reverse (-)

11986919 .. 11995166

Gene Structure 8248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG147700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCCTGGACACGAAGTTGCCAAAGATGACATGATGATCGATGAGTATGAACAGAAGCAAGTGAATGCTGTTCCTGATGGATTTAACTCTCAGTATCTCAAAATTTACTATGGAAAGCTCTTCCCATATGAGGAAATGTTTAAATGGATGTCCTATGCAAATGATGGCAAGCATCCTGCATGCAACCAGTCCTACTTTGGCCGGAGAGAGTTTTCTTTCACACTGGATAATGATGTTTATCTGCGGTACAAAACTTTCAACTCCGTGTCTGAGCTTGAAAATTCTATCAAAGAGAAGTGCCCCGTCAAAATAGATATTGGGCCTGTGTACAATGTTGATCCTGCAAAGAGGCATTCCTATGCTCAAAGTGGTTGCTACCCCGAGGAGAGGGAACTGATTTTTGATATAGATATGTCAGATTACGATGATGTTAGATACTGCTGCTCAGGAGCTGATGTGTGCCTGGAGTGCTGGCCGCTTATGACAATTGCTATCAAAGTGATTGACACTGCCCTTCGAGATGACTTTGGTTTCAATCACATTCTCTGGGTATATAGTGGCCGACGTGGTGTTCATTGTTGGGTTTGTGATGGGAAAGCTAGAAGGCTCACAAATGAACTGAGAGCAGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAACGAAAACAGTCATAAAAAGGTTTCTTTGATGGGCCCTGCTCTTCATCCATTCCTTGTGAGATCATATACTGAAGTTCTTAAGGATTTCTTTGAGAGGACATTGCTTTCCAGTCAAAAGATATTTTCTACTGCAGAGAGATATGAAAAGATCTTAGATATGATTCCTGATGAATCTGTCACTTCTGAGCTTCGGGGAAAGTGGCAAGATAATAGACGAACCTCCAATGCAAAAGAAGACATTAATGTTGCTCGTTGGGAGCAGCTGAAACATTTGCTGCAATCTGGGAAACAGAAGATGCAAGGACTGCGTAGATGTGTGGAGGAGATTGTGTTCTCTTATACCTACCCTAGACTTGACATGGAGGTTTCAAAACATATGAACCATTTATTAAAGGCACCATTCTGTGTACATCCAAAGACAGGTCGTGTTTGTGTTCCAATTGATCCCAACCGTTGTGAGGATTTTGATCCTACTGCAGTTCCAACCCTTTCCACTGTATGTGATAGACCCATGGTTTTCTTCCATTTCCTTACATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

400

Amino Acids

46.67

Weight (kDa)

6.33

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	134 - 369	2.5e-54	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41880
fragaria_vesca	FvH4_5g04460
malus_domestica	MD06G1105400.v1.1
prunus_persica	Prupe.5G117700_v2.0.a1
pyrus_communis	pycom06g09970
rosa_chinensis	RchiOBHm_Chr7g0195041
rosa_laevigata	RLG00000004150 RLG00000008501 RLG00000015305
rosa_multiflora	Rmu_sc0002246.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260810
rosa_rugosa	Rorug07G0020100 Rorug07G0020200
rosa_samantha	Rh6BG025100 Rh6BG025600 Rh6BG025700 Rh6BG026500 Rh6BG026600 Rh6CG024600 Rh6DG024100 Rh6DG024400 Rh7AG147700 Rh7BG148300 Rh7CG152000
rosa_wichuraiana	Rw2G021680 Rw5G042100 Rw6G002490 Rw7G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1057
AccI	GTMKAC	1 cut(s)	651
AciI	CCGC	2 cut(s)	244, 476
AclWI	GGATC	3 cut(s)	332, 1100, 1124
AcoI	YGGCCR	3 cut(s)	199, 473, 559
AcsI	RAATTY	2 cut(s)	102, 280
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	3 cut(s)	248, 329, 1071
AfiI	CCNNNNNNNGG	4 cut(s)	130, 387, 1082, 1120
AflII	CTTAAG	1 cut(s)	740
AflIII	ACRYGT	1 cut(s)	1196
AgsI	TTSAA	4 cut(s)	259, 278, 535, 1032
AjiI	CACGTC	1 cut(s)	566
AjnI	CCWGG	2 cut(s)	4, 462
AloI	GAACNNNNNNTCC	2 cut(s)	977, 1009
AluBI	AGCT	7 cut(s)	118, 274, 452, 599, 629, 850, 925
AluI	AGCT	7 cut(s)	118, 274, 452, 599, 629, 850, 925
AlwI	GGATC	3 cut(s)	332, 1100, 1124
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	5 cut(s)	199, 320, 473, 559, 694
ApaI	GGGCCC	1 cut(s)	698
ApeKI	GCWGC	4 cut(s)	441, 626, 922, 937
ApoI	RAATTY	2 cut(s)	102, 280
AseI	ATTAAT	1 cut(s)	903
AspS9I	GGNCC	3 cut(s)	320, 694, 695
AvaI	CYCGRG	1 cut(s)	380
BaeGI	GKGCMC	2 cut(s)	302, 698
BanI	GGYRCC	1 cut(s)	1057
BanII	GRGCYC	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	903
BbvI	GCAGC	4 cut(s)	428, 638, 924, 934
BccI	CCATC	4 cut(s)	71, 158, 584, 685
BciT130I	CCWGG	2 cut(s)	6, 464
BfaI	CTAG	2 cut(s)	600, 1011
BfmI	CTRYAG	2 cut(s)	792, 1137
BfrI	CTTAAG	1 cut(s)	740
BglII	AGATCT	1 cut(s)	810
BisI	GCNGC	5 cut(s)	442, 476, 627, 923, 938
BlsI	GCNGC	5 cut(s)	443, 477, 628, 924, 939
Bme1390I	CCNGG	2 cut(s)	6, 464
BmeT110I	CYCGRG	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	566
BmgT120I	GGNCC	3 cut(s)	320, 694, 695
BmiI	GGNNCC	2 cut(s)	696, 1059
BmrFI	CCNGG	2 cut(s)	6, 464
BmsI	GCATC	2 cut(s)	181, 948
BpiI	GAAGAC	1 cut(s)	903
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	445
Bsa29I	ATCGAT	1 cut(s)	39
BsaBI	GATNNNNATC	2 cut(s)	237, 1128
BsaJI	CCNNGG	2 cut(s)	381, 1173
BsaXI	ACNNNNNCTCC	4 cut(s)	441, 471, 977, 1007
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 387, 1082, 1120
Bse1I	ACTGG	3 cut(s)	187, 228, 771
Bse3DI	GCAATG	1 cut(s)	761
Bse8I	GATNNNNATC	2 cut(s)	237, 1128
BseBI	CCWGG	2 cut(s)	6, 464
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	381, 1173
BseGI	GGATG	4 cut(s)	153, 172, 706, 1072
BseJI	GATNNNNATC	2 cut(s)	237, 1128
BseLI	CCNNNNNNNGG	4 cut(s)	130, 387, 1082, 1120
BseMI	GCAATG	1 cut(s)	761
BseMII	CTCAG	5 cut(s)	104, 261, 459, 611, 837
BseNI	ACTGG	3 cut(s)	187, 228, 771
BseRI	GAGGAG	2 cut(s)	398, 998
BseSI	GKGCMC	2 cut(s)	302, 698
BseXI	GCAGC	4 cut(s)	428, 638, 924, 934
BshFI	GGCC	5 cut(s)	201, 322, 475, 561, 696
BshNI	GGYRCC	1 cut(s)	1057
BshVI	ATCGAT	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	4 cut(s)	130, 387, 1082, 1120
BsmI	GAATGC	2 cut(s)	70, 352
BsnI	GGCC	5 cut(s)	201, 322, 475, 561, 696
BsoBI	CYCGRG	1 cut(s)	380
Bsp120I	GGGCCC	1 cut(s)	694
Bsp1286I	GDGCHC	2 cut(s)	302, 698
Bsp1407I	TGTACA	2 cut(s)	327, 1069
Bsp143I	GATC	6 cut(s)	36, 337, 722, 810, 1105, 1129
Bsp19I	CCATGG	1 cut(s)	1173
BspACI	CCGC	2 cut(s)	244, 476
BspANI	GGCC	5 cut(s)	201, 322, 475, 561, 696
BspCNI	CTCAG	5 cut(s)	103, 262, 458, 612, 838
BspDI	ATCGAT	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	696, 1059
BspMAI	CTGCAG	2 cut(s)	796, 1141
BspPI	GGATC	3 cut(s)	332, 1100, 1124
BspQI	GCTCTTC	2 cut(s)	125, 708
BspT107I	GGYRCC	1 cut(s)	1057
BspTI	CTTAAG	1 cut(s)	740
BsrDI	GCAATG	1 cut(s)	761
BsrGI	TGTACA	2 cut(s)	327, 1069
BsrI	ACTGG	3 cut(s)	187, 228, 771
BssECI	CCNNGG	2 cut(s)	381, 1173
BssMI	GATC	6 cut(s)	36, 337, 722, 810, 1105, 1129
BssT1I	CCWWGG	1 cut(s)	1173
Bst2UI	CCWGG	2 cut(s)	6, 464
Bst4CI	ACNGT	3 cut(s)	671, 1115, 1159
Bst6I	CTCTTC	2 cut(s)	125, 708
BstAFI	CTTAAG	1 cut(s)	740
BstAPI	GCANNNNNTGC	2 cut(s)	632, 967
BstAUI	TGTACA	2 cut(s)	327, 1069
BstC8I	GCNNGC	3 cut(s)	170, 181, 473
BstDEI	CTNAG	6 cut(s)	90, 270, 445, 620, 814, 846
BstDSI	CCRYGG	1 cut(s)	1173
BstF5I	GGATG	4 cut(s)	153, 172, 706, 1072
BstKTI	GATC	6 cut(s)	39, 340, 725, 813, 1108, 1132
BstMBI	GATC	6 cut(s)	36, 337, 722, 810, 1105, 1129
BstMWI	GCNNNNNNNGC	3 cut(s)	468, 632, 967
BstNI	CCWGG	2 cut(s)	6, 464
BstNSI	RCATGY	2 cut(s)	183, 1200
BstSCI	CCNGG	2 cut(s)	4, 462
BstSFI	CTRYAG	2 cut(s)	792, 1137
BstSLI	GKGCMC	2 cut(s)	302, 698
BstV1I	GCAGC	4 cut(s)	428, 638, 924, 934
BstV2I	GAAGAC	1 cut(s)	903
BstX2I	RGATCY	1 cut(s)	810
BstYI	RGATCY	1 cut(s)	810
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	5 cut(s)	201, 322, 475, 561, 696
BsuTUI	ATCGAT	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	1173
BtrI	CACGTC	1 cut(s)	566
BtsCI	GGATG	4 cut(s)	153, 172, 706, 1072
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	3 cut(s)	221, 507, 1155
Cac8I	GCNNGC	3 cut(s)	170, 181, 473
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr13I	GGNCC	3 cut(s)	320, 694, 695
ClaI	ATCGAT	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	247, 328, 1070
CviAII	CATG	5 cut(s)	31, 180, 1021, 1174, 1197
CviQI	GTAC	3 cut(s)	247, 328, 1070
DdeI	CTNAG	6 cut(s)	90, 270, 445, 620, 814, 846
DpnI	GATC	6 cut(s)	38, 339, 724, 812, 1107, 1131
DpnII	GATC	6 cut(s)	36, 337, 722, 810, 1105, 1129
DraI	TTTAAA	1 cut(s)	142
EaeI	YGGCCR	3 cut(s)	199, 473, 559
Eam1104I	CTCTTC	2 cut(s)	125, 708
EarI	CTCTTC	2 cut(s)	125, 708
Eco130I	CCWWGG	1 cut(s)	1173
Eco24I	GRGCYC	1 cut(s)	698
Eco57I	CTGAAG	1 cut(s)	753
Eco88I	CYCGRG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRII	CCWGG	2 cut(s)	4, 462
EcoT14I	CCWWGG	1 cut(s)	1173
EcoT38I	GRGCYC	1 cut(s)	698
ErhI	CCWWGG	1 cut(s)	1173
FaeI	CATG	5 cut(s)	34, 183, 1024, 1177, 1200
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FatI	CATG	5 cut(s)	30, 179, 1020, 1173, 1196
FauNDI	CATATG	2 cut(s)	127, 1038
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	5 cut(s)	442, 476, 627, 923, 938
FokI	GGATG	4 cut(s)	159, 160, 693, 1059
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	5 cut(s)	442, 476, 627, 923, 938
FspBI	CTAG	2 cut(s)	600, 1011
GluI	GCNGC	5 cut(s)	442, 476, 627, 923, 938
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	5 cut(s)	201, 322, 475, 561, 696
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	5 cut(s)	34, 183, 1024, 1177, 1200
HinfI	GANTC	2 cut(s)	823, 833
HpaII	CCGG	1 cut(s)	202
Hpy166II	GTNNAC	3 cut(s)	328, 652, 1070
Hpy188I	TCNGA	3 cut(s)	271, 418, 847
Hpy188III	TCNNGA	4 cut(s)	74, 447, 518, 827
Hpy8I	GTNNAC	3 cut(s)	328, 652, 1070
Hpy99I	CGWCG	1 cut(s)	567
HpyAV	CCTTC	2 cut(s)	524, 597
HpyCH4III	ACNGT	3 cut(s)	671, 1115, 1159
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	9 cut(s)	158, 179, 183, 344, 794, 890, 940, 961, 1139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	468, 632, 967
HpyF3I	CTNAG	6 cut(s)	90, 270, 445, 620, 814, 846
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	5 cut(s)	34, 183, 1024, 1177, 1200
Kzo9I	GATC	6 cut(s)	36, 337, 722, 810, 1105, 1129
LguI	GCTCTTC	2 cut(s)	125, 708
LmnI	GCTCC	2 cut(s)	449, 919
Lsp1109I	GCAGC	4 cut(s)	428, 638, 924, 934
LweI	GCATC	2 cut(s)	181, 948
MaeI	CTAG	2 cut(s)	600, 1011
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	1 cut(s)	838
MalI	GATC	6 cut(s)	38, 339, 724, 812, 1107, 1131
MboI	GATC	6 cut(s)	36, 337, 722, 810, 1105, 1129
MboII	GAAGA	5 cut(s)	112, 695, 908, 967, 1174
MfeI	CAATTG	2 cut(s)	486, 1101
MflI	RGATCY	1 cut(s)	810
MhlI	GDGCHC	2 cut(s)	302, 698
MluCI	AATT	4 cut(s)	102, 280, 486, 1101
MmeI	TCCRAC	1 cut(s)	1169
MnlI	CCTC	9 cut(s)	124, 342, 376, 381, 750, 892, 976, 1018, 1114
MseI	TTAA	6 cut(s)	84, 141, 741, 903, 1052, 1201
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	925
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	6, 464
MunI	CAATTG	2 cut(s)	486, 1101
Mva1269I	GAATGC	2 cut(s)	70, 352
MvaI	CCWGG	2 cut(s)	6, 464
MwoI	GCNNNNNNNGC	3 cut(s)	468, 632, 967
NcoI	CCATGG	1 cut(s)	1173
NdeI	CATATG	2 cut(s)	127, 1038
NdeII	GATC	6 cut(s)	36, 337, 722, 810, 1105, 1129
NlaIII	CATG	5 cut(s)	34, 183, 1024, 1177, 1200
NlaIV	GGNNCC	2 cut(s)	696, 1059
NmuCI	GTSAC	1 cut(s)	838
NspI	RCATGY	2 cut(s)	183, 1200
PaeI	GCATGC	1 cut(s)	183
PciI	ACATGT	1 cut(s)	1196
PciSI	GCTCTTC	2 cut(s)	125, 708
PctI	GAATGC	2 cut(s)	70, 352
PfeI	GAWTC	2 cut(s)	823, 833
PkrI	GCNGC	5 cut(s)	443, 477, 628, 924, 939
PscI	ACATGT	1 cut(s)	1196
PshBI	ATTAAT	1 cut(s)	903
Psp6I	CCWGG	2 cut(s)	4, 462
PspGI	CCWGG	2 cut(s)	4, 462
PspN4I	GGNNCC	2 cut(s)	696, 1059
PspOMI	GGGCCC	1 cut(s)	694
PspPI	GGNCC	3 cut(s)	320, 694, 695
PstI	CTGCAG	2 cut(s)	796, 1141
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	810
PvuII	CAGCTG	1 cut(s)	925
RsaI	GTAC	3 cut(s)	248, 329, 1071
RsaNI	GTAC	3 cut(s)	247, 328, 1070
RseI	CAYNNNNRTG	1 cut(s)	357
SapI	GCTCTTC	2 cut(s)	125, 708
SaqAI	TTAA	6 cut(s)	84, 141, 741, 903, 1052, 1201
SatI	GCNGC	5 cut(s)	442, 476, 627, 923, 938
Sau3AI	GATC	6 cut(s)	36, 337, 722, 810, 1105, 1129
Sau96I	GGNCC	3 cut(s)	320, 694, 695
ScrFI	CCNGG	2 cut(s)	6, 464
SduI	GDGCHC	2 cut(s)	302, 698
SfaNI	GCATC	2 cut(s)	181, 948
SfcI	CTRYAG	2 cut(s)	792, 1137
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	4 cut(s)	102, 280, 486, 1101
SsiI	CCGC	2 cut(s)	244, 476
SspMI	CTAG	2 cut(s)	600, 1011
StyD4I	CCNGG	2 cut(s)	4, 462
StyI	CCWWGG	1 cut(s)	1173
TaaI	ACNGT	3 cut(s)	671, 1115, 1159
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	2 cut(s)	39, 517
TasI	AATT	4 cut(s)	102, 280, 486, 1101
TatI	WGTACW	2 cut(s)	327, 1069
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	2 cut(s)	823, 833
Tru1I	TTAA	6 cut(s)	84, 141, 741, 903, 1052, 1201
Tru9I	TTAA	6 cut(s)	84, 141, 741, 903, 1052, 1201
TscAI	CASTG	3 cut(s)	228, 514, 1162
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	4 cut(s)	441, 626, 922, 937
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	7 cut(s)	63, 563, 630, 695, 819, 846, 1055
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	3 cut(s)	228, 514, 1162
Vha464I	CTTAAG	1 cut(s)	740
VspI	ATTAAT	1 cut(s)	903
XapI	RAATTY	2 cut(s)	102, 280
XceI	RCATGY	2 cut(s)	183, 1200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	651
XspI	CTAG	2 cut(s)	600, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.