RchiOBHm_Chr7g0195041

Belongs to the eukaryotic-type primase small subunit family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
13003886 .. 13009511
5626 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17443

Sequence Viewer

Length: 1371 bp
ATGCCTGGACACGAAGTTGCCAAAGATGACATGATGATCGATGAGTATGAACAGAAGCAAGTGAATGCTGTTCCTGATGGATTTAACTCTCAGTATCTCAAAATTTACTATGGAAAGCTCTTCCCATATGAGGAAATGTTTAAATGGATGTCCTATGCAAATGATGGCAAGCATCCTGCATGCAACCAGTCCTACTTTGGCCGGAGAGAGTTTTCTTTCACACTGGATAATGATGTTTATCTGCGGTACAAAACTTTCAACTCCGTGTCTGAGCTTGAAAATTCTATCAAAGAGAAGTGCCCCGTCAAAATAGATATTGGGCCTGTGTACAATGTTGATCCTGCAAAGAGGCATTCCTATGCTCAAAGTGGTTGCTACCCCGAGGAGAGGGAACTGATTTTTGATATAGATATGTCAGATTACGATGATGTTAGATACTGCTGCTCAGGAGCTGATGTGTGCCTGGAGTGCTGGCCGCTTATGACAATTGCTATCAAAGTGATTGACACTGCCCTTCGAGATGACTTTGGTTTCAATCACATTCTCTGGGTATATAGTGGCCGACGTGGTGTTCATTGTTGGGTTTGTGATGGGAAAGCTAGAAGGCTCACAAATGAACTGAGAGCAGCTATTGCTGACTATTTTCGTGTCTACAAGGTGGGCAACGAAAACAGTCATAAAAAGGTTTCTTTGATGGGCCCTGCTCTTCATCCATTCCTTGTGAGATCATATACTGAAGTTCTTAAGGATTTCTTTGAGAGGACATTGCTTTCCAGTCAAAAGATATTTTCTACTGCAGAGAGATATGAAAAGATCTTAGATATGATTCCTGATGAATCTGTCACTTCTGAGCTTCGGGGAAAGTGGCAAGATAATAGACGAACCTCCAATGCAAAAGAAGACATTAATGTTGCTCGTTGGGAGCAGCTGAAACATTTGCTGCAATCTGGGAAACAGAAGATGCAAGGACTGCGTAGATGTGTGGAGGAGATTGTGTTCTCTTATACCTACCCTAGACTTGACATGGAGGTTTCAAAACATATGAACCATTTATTAAAGGCACCATTCTGTGTACATCCAAAGACAGGTCGTGTTTGTGTTCCAATTGATCCCAACCGTTGTGAGGATTTTGATCCTACTGCAGTTCCAACCCTTTCCACTCTTATAGAAGAACTTAATAATGAGGGTTTGAGAGCAGAGGCTGATAACGACCGGGATAGAACGTCACTTGGAAAATCAATAAGATTCTTCCAATCATCATTTTTGGAGCCTTTGGTAAAATCTTGCAAGGAGGAGATGATAAGTTCCTACAATGCGAAACTGCAGCAGTCGAAGTTGCAGCAGTCAAAGAACGTGCTTGCTGCAATCTAG

Protein Analysis

456

Amino Acids

52.88

Weight (kDa)

6.3

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_primase_S PF01896 134 - 370 3.7e-54 DNA primase small subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1060
AccI GTMKAC 1 cut(s) 651
AciI CCGC 2 cut(s) 244, 476
AclWI GGATC 3 cut(s) 332, 1103, 1127
AcoI YGGCCR 3 cut(s) 199, 473, 559
AcsI RAATTY 2 cut(s) 102, 280
AcuI CTGAAG 1 cut(s) 756
AfaI GTAC 3 cut(s) 248, 329, 1074
AfiI CCNNNNNNNGG 4 cut(s) 130, 387, 1085, 1123
AflII CTTAAG 1 cut(s) 743
AgsI TTSAA 4 cut(s) 259, 278, 535, 1035
AjiI CACGTC 1 cut(s) 566
AjnI CCWGG 2 cut(s) 4, 462
AloI GAACNNNNNNTCC 2 cut(s) 980, 1012
AluBI AGCT 7 cut(s) 118, 274, 452, 599, 629, 853, 928
AluI AGCT 7 cut(s) 118, 274, 452, 599, 629, 853, 928
AlwI GGATC 3 cut(s) 332, 1103, 1127
AlwNI CAGNNNCTG 2 cut(s) 452, 1202
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 5 cut(s) 199, 320, 473, 559, 697
ApaI GGGCCC 1 cut(s) 701
ApeKI GCWGC 7 cut(s) 441, 626, 925, 940, 1324, 1339, 1361
ApoI RAATTY 2 cut(s) 102, 280
AseI ATTAAT 1 cut(s) 906
AspS9I GGNCC 3 cut(s) 320, 697, 698
AsuC2I CCSGG 1 cut(s) 1214
AvaI CYCGRG 1 cut(s) 380
BaeGI GKGCMC 2 cut(s) 302, 701
BanI GGYRCC 1 cut(s) 1060
BanII GRGCYC 1 cut(s) 701
BbsI GAAGAC 1 cut(s) 906
BbvI GCAGC 7 cut(s) 428, 638, 927, 937, 1336, 1348, 1351
BccI CCATC 4 cut(s) 71, 158, 584, 688
BciT130I CCWGG 2 cut(s) 6, 464
BcnI CCSGG 1 cut(s) 1214
BfaI CTAG 3 cut(s) 600, 1014, 1369
BfmI CTRYAG 3 cut(s) 795, 1140, 1322
BfrI CTTAAG 1 cut(s) 743
BglII AGATCT 1 cut(s) 813
BisI GCNGC 8 cut(s) 442, 476, 627, 926, 941, 1325, 1340, 1362
BlsI GCNGC 8 cut(s) 443, 477, 628, 927, 942, 1326, 1341, 1363
Bme1390I CCNGG 3 cut(s) 6, 464, 1214
BmeT110I CYCGRG 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 566
BmgT120I GGNCC 3 cut(s) 320, 697, 698
BmiI GGNNCC 3 cut(s) 699, 1062, 1269
BmrFI CCNGG 3 cut(s) 6, 464, 1214
BmsI GCATC 2 cut(s) 181, 951
BpiI GAAGAC 1 cut(s) 906
BpmI CTGGAG 1 cut(s) 485
Bpu10I CCTNAGC 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 1214
Bsa29I ATCGAT 1 cut(s) 39
BsaBI GATNNNNATC 2 cut(s) 237, 1131
BsaJI CCNNGG 1 cut(s) 381
BsaXI ACNNNNNCTCC 4 cut(s) 441, 471, 980, 1010
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 387, 1085, 1123
Bse1I ACTGG 3 cut(s) 187, 228, 774
Bse3DI GCAATG 1 cut(s) 764
Bse8I GATNNNNATC 2 cut(s) 237, 1131
BseBI CCWGG 2 cut(s) 6, 464
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 4 cut(s) 153, 172, 709, 1075
BseJI GATNNNNATC 2 cut(s) 237, 1131
BseLI CCNNNNNNNGG 4 cut(s) 130, 387, 1085, 1123
BseMI GCAATG 1 cut(s) 764
BseMII CTCAG 5 cut(s) 104, 261, 459, 611, 840
BseNI ACTGG 3 cut(s) 187, 228, 774
BseRI GAGGAG 3 cut(s) 398, 1001, 1307
BseSI GKGCMC 2 cut(s) 302, 701
BseXI GCAGC 7 cut(s) 428, 638, 927, 937, 1336, 1348, 1351
Bsh1285I CGRYCG 1 cut(s) 1213
BshFI GGCC 5 cut(s) 201, 322, 475, 561, 699
BshNI GGYRCC 1 cut(s) 1060
BshVI ATCGAT 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 1213
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 2 cut(s) 202, 1213
BslI CCNNNNNNNGG 4 cut(s) 130, 387, 1085, 1123
BsmI GAATGC 2 cut(s) 70, 352
BsnI GGCC 5 cut(s) 201, 322, 475, 561, 699
BsoBI CYCGRG 1 cut(s) 380
Bsp120I GGGCCC 1 cut(s) 697
Bsp1286I GDGCHC 2 cut(s) 302, 701
Bsp1407I TGTACA 2 cut(s) 327, 1072
Bsp143I GATC 6 cut(s) 36, 337, 725, 813, 1108, 1132
BspACI CCGC 2 cut(s) 244, 476
BspANI GGCC 5 cut(s) 201, 322, 475, 561, 699
BspCNI CTCAG 5 cut(s) 103, 262, 458, 612, 841
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 3 cut(s) 699, 1062, 1269
BspMAI CTGCAG 3 cut(s) 799, 1144, 1326
BspPI GGATC 3 cut(s) 332, 1103, 1127
BspQI GCTCTTC 2 cut(s) 125, 711
BspT107I GGYRCC 1 cut(s) 1060
BspTI CTTAAG 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 764
BsrGI TGTACA 2 cut(s) 327, 1072
BsrI ACTGG 3 cut(s) 187, 228, 774
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 6 cut(s) 36, 337, 725, 813, 1108, 1132
Bst2UI CCWGG 2 cut(s) 6, 464
Bst4CI ACNGT 2 cut(s) 674, 1118
Bst6I CTCTTC 2 cut(s) 125, 711
BstAFI CTTAAG 1 cut(s) 743
BstAPI GCANNNNNTGC 2 cut(s) 632, 970
BstAUI TGTACA 2 cut(s) 327, 1072
BstC8I GCNNGC 4 cut(s) 170, 181, 473, 1359
BstDEI CTNAG 6 cut(s) 90, 270, 445, 620, 817, 849
BstF5I GGATG 4 cut(s) 153, 172, 709, 1075
BstKTI GATC 6 cut(s) 39, 340, 728, 816, 1111, 1135
BstMBI GATC 6 cut(s) 36, 337, 725, 813, 1108, 1132
BstMCI CGRYCG 1 cut(s) 1213
BstMWI GCNNNNNNNGC 3 cut(s) 468, 632, 970
BstNI CCWGG 2 cut(s) 6, 464
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 3 cut(s) 4, 462, 1212
BstSFI CTRYAG 3 cut(s) 795, 1140, 1322
BstSLI GKGCMC 2 cut(s) 302, 701
BstV1I GCAGC 7 cut(s) 428, 638, 927, 937, 1336, 1348, 1351
BstV2I GAAGAC 1 cut(s) 906
BstX2I RGATCY 1 cut(s) 813
BstYI RGATCY 1 cut(s) 813
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 5 cut(s) 201, 322, 475, 561, 699
BsuTUI ATCGAT 1 cut(s) 39
BtrI CACGTC 1 cut(s) 566
BtsCI GGATG 4 cut(s) 153, 172, 709, 1075
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 2 cut(s) 221, 507
Cac8I GCNNGC 4 cut(s) 170, 181, 473, 1359
CaiI CAGNNNCTG 2 cut(s) 452, 1202
Cfr13I GGNCC 3 cut(s) 320, 697, 698
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 3 cut(s) 247, 328, 1073
CviAII CATG 3 cut(s) 31, 180, 1024
CviQI GTAC 3 cut(s) 247, 328, 1073
DdeI CTNAG 6 cut(s) 90, 270, 445, 620, 817, 849
DpnI GATC 6 cut(s) 38, 339, 727, 815, 1110, 1134
DpnII GATC 6 cut(s) 36, 337, 725, 813, 1108, 1132
DraI TTTAAA 1 cut(s) 142
EaeI YGGCCR 3 cut(s) 199, 473, 559
Eam1104I CTCTTC 2 cut(s) 125, 711
EarI CTCTTC 2 cut(s) 125, 711
Eco24I GRGCYC 1 cut(s) 701
Eco57I CTGAAG 1 cut(s) 756
Eco88I CYCGRG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 698
EcoRII CCWGG 2 cut(s) 4, 462
EcoT38I GRGCYC 1 cut(s) 701
FaeI CATG 3 cut(s) 34, 183, 1027
FalI AAGNNNNNCTT 2 cut(s) 737, 769
FatI CATG 3 cut(s) 30, 179, 1023
FauNDI CATATG 2 cut(s) 127, 1041
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 8 cut(s) 442, 476, 627, 926, 941, 1325, 1340, 1362
FokI GGATG 4 cut(s) 159, 160, 696, 1062
FriOI GRGCYC 1 cut(s) 701
Fsp4HI GCNGC 8 cut(s) 442, 476, 627, 926, 941, 1325, 1340, 1362
FspBI CTAG 3 cut(s) 600, 1014, 1369
GluI GCNGC 8 cut(s) 442, 476, 627, 926, 941, 1325, 1340, 1362
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 5 cut(s) 201, 322, 475, 561, 699
HapII CCGG 2 cut(s) 202, 1213
Hin1II CATG 3 cut(s) 34, 183, 1027
HinfI GANTC 3 cut(s) 826, 836, 1245
HpaII CCGG 2 cut(s) 202, 1213
Hpy166II GTNNAC 3 cut(s) 328, 652, 1073
Hpy188I TCNGA 3 cut(s) 271, 418, 850
Hpy188III TCNNGA 4 cut(s) 74, 447, 518, 830
Hpy8I GTNNAC 3 cut(s) 328, 652, 1073
Hpy99I CGWCG 1 cut(s) 567
HpyAV CCTTC 2 cut(s) 524, 597
HpyCH4III ACNGT 2 cut(s) 674, 1118
HpyCH4IV ACGT 3 cut(s) 565, 1223, 1353
HpyF10VI GCNNNNNNNGC 3 cut(s) 468, 632, 970
HpyF3I CTNAG 6 cut(s) 90, 270, 445, 620, 817, 849
HpySE526I ACGT 3 cut(s) 565, 1223, 1353
Hsp92II CATG 3 cut(s) 34, 183, 1027
Kzo9I GATC 6 cut(s) 36, 337, 725, 813, 1108, 1132
LguI GCTCTTC 2 cut(s) 125, 711
LmnI GCTCC 3 cut(s) 449, 922, 1267
Lsp1109I GCAGC 7 cut(s) 428, 638, 927, 937, 1336, 1348, 1351
LweI GCATC 2 cut(s) 181, 951
MaeI CTAG 3 cut(s) 600, 1014, 1369
MaeII ACGT 3 cut(s) 565, 1223, 1353
MaeIII GTNAC 2 cut(s) 841, 1224
MalI GATC 6 cut(s) 38, 339, 727, 815, 1110, 1134
MboI GATC 6 cut(s) 36, 337, 725, 813, 1108, 1132
MboII GAAGA 6 cut(s) 112, 698, 911, 970, 1181, 1240
MfeI CAATTG 2 cut(s) 486, 1104
MflI RGATCY 1 cut(s) 813
MhlI GDGCHC 2 cut(s) 302, 701
MluCI AATT 4 cut(s) 102, 280, 486, 1104
MmeI TCCRAC 1 cut(s) 1172
MseI TTAA 6 cut(s) 84, 141, 744, 906, 1055, 1176
MslI CAYNNNNRTG 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 928
MspCI CTTAAG 1 cut(s) 743
MspI CCGG 2 cut(s) 202, 1213
MspR9I CCNGG 3 cut(s) 6, 464, 1214
MunI CAATTG 2 cut(s) 486, 1104
Mva1269I GAATGC 2 cut(s) 70, 352
MvaI CCWGG 2 cut(s) 6, 464
MwoI GCNNNNNNNGC 3 cut(s) 468, 632, 970
NciI CCSGG 1 cut(s) 1214
NdeI CATATG 2 cut(s) 127, 1041
NdeII GATC 6 cut(s) 36, 337, 725, 813, 1108, 1132
NlaIII CATG 3 cut(s) 34, 183, 1027
NlaIV GGNNCC 3 cut(s) 699, 1062, 1269
NmuCI GTSAC 2 cut(s) 841, 1224
NspI RCATGY 1 cut(s) 183
PaeI GCATGC 1 cut(s) 183
PciSI GCTCTTC 2 cut(s) 125, 711
PctI GAATGC 2 cut(s) 70, 352
PfeI GAWTC 3 cut(s) 826, 836, 1245
PkrI GCNGC 8 cut(s) 443, 477, 628, 927, 942, 1326, 1341, 1363
PshBI ATTAAT 1 cut(s) 906
Psp6I CCWGG 2 cut(s) 4, 462
PspGI CCWGG 2 cut(s) 4, 462
PspN4I GGNNCC 3 cut(s) 699, 1062, 1269
PspOMI GGGCCC 1 cut(s) 697
PspPI GGNCC 3 cut(s) 320, 697, 698
PstI CTGCAG 3 cut(s) 799, 1144, 1326
PstNI CAGNNNCTG 2 cut(s) 452, 1202
PsuI RGATCY 1 cut(s) 813
PvuII CAGCTG 1 cut(s) 928
RsaI GTAC 3 cut(s) 248, 329, 1074
RsaNI GTAC 3 cut(s) 247, 328, 1073
RseI CAYNNNNRTG 1 cut(s) 357
SapI GCTCTTC 2 cut(s) 125, 711
SaqAI TTAA 6 cut(s) 84, 141, 744, 906, 1055, 1176
SatI GCNGC 8 cut(s) 442, 476, 627, 926, 941, 1325, 1340, 1362
Sau3AI GATC 6 cut(s) 36, 337, 725, 813, 1108, 1132
Sau96I GGNCC 3 cut(s) 320, 697, 698
ScrFI CCNGG 3 cut(s) 6, 464, 1214
SduI GDGCHC 2 cut(s) 302, 701
SfaNI GCATC 2 cut(s) 181, 951
SfcI CTRYAG 3 cut(s) 795, 1140, 1322
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 743
SmoI CTYRAG 1 cut(s) 743
SphI GCATGC 1 cut(s) 183
Sse9I AATT 4 cut(s) 102, 280, 486, 1104
SsiI CCGC 2 cut(s) 244, 476
SspMI CTAG 3 cut(s) 600, 1014, 1369
StyD4I CCNGG 3 cut(s) 4, 462, 1212
TaaI ACNGT 2 cut(s) 674, 1118
TaiI ACGT 3 cut(s) 568, 1226, 1356
TaqI TCGA 3 cut(s) 39, 517, 1331
TasI AATT 4 cut(s) 102, 280, 486, 1104
TatI WGTACW 2 cut(s) 327, 1072
TauI GCSGC 1 cut(s) 478
TfiI GAWTC 3 cut(s) 826, 836, 1245
Tru1I TTAA 6 cut(s) 84, 141, 744, 906, 1055, 1176
Tru9I TTAA 6 cut(s) 84, 141, 744, 906, 1055, 1176
TscAI CASTG 2 cut(s) 228, 514
TseFI GTSAC 2 cut(s) 841, 1224
TseI GCWGC 7 cut(s) 441, 626, 925, 940, 1324, 1339, 1361
Tsp45I GTSAC 2 cut(s) 841, 1224
TspDTI ATGAA 7 cut(s) 63, 563, 630, 698, 822, 849, 1058
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 2 cut(s) 228, 514
Vha464I CTTAAG 1 cut(s) 743
VspI ATTAAT 1 cut(s) 906
XapI RAATTY 2 cut(s) 102, 280
XceI RCATGY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 651
XspI CTAG 3 cut(s) 600, 1014, 1369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.