pycom06g09970

Belongs to the eukaryotic-type primase small subunit family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
15284567 .. 15290191
5625 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g09970.18

Sequence Viewer

Length: 1599 bp
ATGTCCATTGAGAAGAAAAAAAGAAAGGCAACCAGAAGTAATCCAATGACGTGGGACCGCGTGCTTCCTTCTTTCCCGCCAAATATCCCCCTTAACCTTTTTACCCGCCAAAATATCCCCTTCCCTAGTCCCAGTTTTTTGTCCTACCGCCATTTCTGTTACCCCTCTCTCTCTCTCTGTTTTCTCGCCGCCATCCTTCACTTGGCTCTCTCCAAGGTAATCTGTTCAAACATGACTGGAGAGCAAGTCTCTAAAGGAAGCGATGACATGATGATCGACGAATATGAACAGAAACAAGGGAGTGTTGTTCCTGAAGGATTTAACTCCCATTATCTCAAAGTTTACTATGGAAAACTCTTTCCATATGCGGATATTTTTAAATGGATGTCCTATGGAAATGATGGGAAGCATCCTGCATGCGACCAGTCCTACTTTAGCCGGAGAGAGTTCTCTTTCACACTGGATAATGATGTCTATCTGCGGTTCCAGTCCTTCAACTCTGCGTCTGAGCTTGAAAGTTCTGTCAAAGAAAAGTGTCCGGTCAAAATAGATATTGGACCTGTGTATAGTGTTGATCCTTCAAAGAGGCACGCATATGCTCAGAGTGGCGATAATGTTTTCACCCCAGTGGAGAGGGAGCTGATCTTTGATATAGATATGTCTGACTACGATGATGTGAGGTACTGCTGTTCAGGAGCTGATGTTTGCTTGGAGTGCTGGCCACTTATGACAATTGCTATCAAAGTGATTGATACAGCCCTTAGAGATGACTTTGGTTTCAGTCACATTCTCTGGGTATATAGTGGTAGACGTGGCGTTCATTGCTGGGTTTGTGATGCGAAAGCAAGAAGGCTGACAAATGAACAGAGGGCAGCTATTGCTGATTATTTTCGTGTCTATAAGGGCAATGAAAACAGTCAGAAAAAGGTTTCTTTTACTGGTCATGCTCTCCATCCATTCCTTTCGAGAGCTTATACTGGAGTTCTTACAGAGTTCTTTAAGAAATTGCTTTTGAGTCAAAAGATATTTTCAACCGAGGAAAGATATGAAAAGATCTTGGATATGATTCCCGATCCTGATCAATCTATTACTTCTGAGCTTCGTGGAAGGTGGCAAGAGAAGAGACAAACCTCCAGCTCAAAAGAAGACATTAATGTTGTTAGATGGGAGCAGCTAAAAACTATGCTGCAATCTGGAAAACCTAAGGTGCAAGGATTGCGTAGGTGTGTTGAAGAGATTGTGTTCTCCTTTACCTACCCTAGGCTGGACATGGAGGTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTCTGTGTACACCCAAAAACAGGTCGTGTTTGTGTTCCAATTGATCCAAATCATTGTGAGGACTTTGATCCTACTGCAGTACCAACCCTTTCCACTCTTTTAGAACAACTCAACATTGGAGGTTTGAGAGCAGAAGGTGATAATGAATGGGACAGAACGGCACTCGGACAATCAATCAGGTTTTTCAGATCATCGTTTCTGCAGCCTCTGCTAAAATCTTGCAAGGAGGAGATGGAAAGCTCCTACACTGCGAGACTGCAGCAGTCGAAGAACTCCTTTAATTGGTAA

Protein Analysis

533

Amino Acids

61.35

Weight (kDa)

8.04

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1306
AccI GTMKAC 1 cut(s) 808
AccII CGCG 1 cut(s) 60
AciI CCGC 7 cut(s) 58, 77, 106, 148, 189, 368, 481
AclWI GGATC 4 cut(s) 569, 1067, 1349, 1373
AcoI YGGCCR 1 cut(s) 719
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 3 cut(s) 683, 1320, 1392
AfiI CCNNNNNNNGG 5 cut(s) 202, 1260, 1264, 1331, 1593
AgsI TTSAA 7 cut(s) 228, 496, 515, 582, 1032, 1232, 1281
AjiI CACGTC 2 cut(s) 51, 812
AleI CACNNNNGTG 1 cut(s) 626
AluBI AGCT 9 cut(s) 511, 640, 698, 875, 971, 1099, 1137, 1174, 1551
AluI AGCT 9 cut(s) 511, 640, 698, 875, 971, 1099, 1137, 1174, 1551
Alw26I GTCTC 3 cut(s) 253, 1117, 1558
AlwI GGATC 4 cut(s) 569, 1067, 1349, 1373
AlwNI CAGNNNCTG 2 cut(s) 698, 1519
AoxI GGCC 1 cut(s) 719
ApeKI GCWGC 5 cut(s) 872, 1171, 1186, 1513, 1570
AseI ATTAAT 1 cut(s) 1152
AspA2I CCTAGG 1 cut(s) 1259
AspS9I GGNCC 2 cut(s) 55, 557
AsuHPI GGTGA 2 cut(s) 613, 1460
AvaII GGWCC 2 cut(s) 55, 557
AvrII CCTAGG 1 cut(s) 1259
AxyI CCTNAGG 1 cut(s) 1203
BaeI ACNNNNGTAYC 4 cut(s) 673, 706, 1374, 1407
BalI TGGCCA 1 cut(s) 721
BanI GGYRCC 1 cut(s) 1306
BbsI GAAGAC 1 cut(s) 1152
BbvI GCAGC 5 cut(s) 884, 1173, 1183, 1525, 1582
BccI CCATC 5 cut(s) 200, 395, 960, 1158, 1537
BceAI ACGGC 1 cut(s) 1485
BclI TGATCA 1 cut(s) 1078
BcoDI GTCTC 3 cut(s) 253, 1117, 1558
BfaI CTAG 2 cut(s) 126, 1260
BfmI CTRYAG 3 cut(s) 1386, 1511, 1568
BglII AGATCT 1 cut(s) 1053
BisI GCNGC 6 cut(s) 189, 873, 1172, 1187, 1514, 1571
BlnI CCTAGG 1 cut(s) 1259
BlsI GCNGC 6 cut(s) 190, 874, 1173, 1188, 1515, 1572
Bme18I GGWCC 2 cut(s) 55, 557
BmgBI CACGTC 2 cut(s) 51, 812
BmgT120I GGNCC 2 cut(s) 55, 557
BmiI GGNNCC 3 cut(s) 56, 485, 1308
BmrI ACTGGG 2 cut(s) 126, 620
BmsI GCATC 2 cut(s) 418, 826
BmuI ACTGGG 2 cut(s) 126, 620
BpiI GAAGAC 1 cut(s) 1152
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 3 cut(s) 258, 999, 1117
BsaBI GATNNNNATC 3 cut(s) 474, 1077, 1359
BsaJI CCNNGG 3 cut(s) 213, 1035, 1259
BsaWI WCCGGW 1 cut(s) 538
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 687, 717
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 1260, 1264, 1331, 1593
Bse1I ACTGG 8 cut(s) 132, 241, 424, 465, 487, 626, 943, 982
Bse21I CCTNAGG 1 cut(s) 1203
Bse3DI GCAATG 2 cut(s) 820, 913
Bse8I GATNNNNATC 3 cut(s) 474, 1077, 1359
BseDI CCNNGG 3 cut(s) 213, 1035, 1259
BseGI GGATG 4 cut(s) 192, 390, 409, 952
BseJI GATNNNNATC 3 cut(s) 474, 1077, 1359
BseLI CCNNNNNNNGG 5 cut(s) 202, 1260, 1264, 1331, 1593
BseMI GCAATG 2 cut(s) 820, 913
BseMII CTCAG 3 cut(s) 498, 614, 1086
BseNI ACTGG 8 cut(s) 132, 241, 424, 465, 487, 626, 943, 982
BseRI GAGGAG 1 cut(s) 1553
BseXI GCAGC 5 cut(s) 884, 1173, 1183, 1525, 1582
BseYI CCCAGC 1 cut(s) 825
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 721
BshNI GGYRCC 1 cut(s) 1306
BsiSI CCGG 2 cut(s) 439, 539
BslFI GGGAC 3 cut(s) 68, 114, 1475
BslI CCNNNNNNNGG 5 cut(s) 202, 1260, 1264, 1331, 1593
BsmAI GTCTC 3 cut(s) 253, 1117, 1558
BsmFI GGGAC 3 cut(s) 68, 114, 1475
BsnI GGCC 1 cut(s) 721
Bsp1407I TGTACA 1 cut(s) 1318
Bsp143I GATC 9 cut(s) 273, 574, 642, 1053, 1072, 1078, 1354, 1378, 1499
BspACI CCGC 7 cut(s) 58, 77, 106, 148, 189, 368, 481
BspANI GGCC 1 cut(s) 721
BspCNI CTCAG 3 cut(s) 499, 613, 1087
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 56, 485, 1308
BspMAI CTGCAG 3 cut(s) 1390, 1515, 1572
BspPI GGATC 4 cut(s) 569, 1067, 1349, 1373
BspT107I GGYRCC 1 cut(s) 1306
BsrDI GCAATG 2 cut(s) 820, 913
BsrGI TGTACA 1 cut(s) 1318
BsrI ACTGG 8 cut(s) 132, 241, 424, 465, 487, 626, 943, 982
BssECI CCNNGG 3 cut(s) 213, 1035, 1259
BssMI GATC 9 cut(s) 273, 574, 642, 1053, 1072, 1078, 1354, 1378, 1499
BssT1I CCWWGG 2 cut(s) 213, 1259
Bst4CI ACNGT 1 cut(s) 917
Bst6I CTCTTC 2 cut(s) 1115, 1227
BstAPI GCANNNNNTGC 3 cut(s) 878, 1216, 1519
BstAUI TGTACA 1 cut(s) 1318
BstC8I GCNNGC 4 cut(s) 62, 418, 591, 719
BstDEI CTNAG 5 cut(s) 507, 600, 761, 1095, 1203
BstENI CCTNNNNNAGG 1 cut(s) 1258
BstF5I GGATG 4 cut(s) 192, 390, 409, 952
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 9 cut(s) 276, 577, 645, 1056, 1075, 1081, 1357, 1381, 1502
BstMAI GTCTC 3 cut(s) 253, 1117, 1558
BstMBI GATC 9 cut(s) 273, 574, 642, 1053, 1072, 1078, 1354, 1378, 1499
BstMWI GCNNNNNNNGC 5 cut(s) 714, 822, 878, 1216, 1519
BstNSI RCATGY 1 cut(s) 420
BstSFI CTRYAG 3 cut(s) 1386, 1511, 1568
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 5 cut(s) 884, 1173, 1183, 1525, 1582
BstV2I GAAGAC 1 cut(s) 1152
BstX2I RGATCY 1 cut(s) 1053
BstXI CCANNNNNNTGG 1 cut(s) 51
BstYI RGATCY 1 cut(s) 1053
Bsu36I CCTNAGG 1 cut(s) 1203
BsuRI GGCC 1 cut(s) 721
BtgZI GCGATG 1 cut(s) 276
BtrI CACGTC 2 cut(s) 51, 812
BtsCI GGATG 4 cut(s) 192, 390, 409, 952
BtsI GCAGTG 1 cut(s) 1557
BtsIMutI CAGTG 3 cut(s) 458, 633, 1557
Cac8I GCNNGC 4 cut(s) 62, 418, 591, 719
CaiI CAGNNNCTG 2 cut(s) 698, 1519
Cfr13I GGNCC 2 cut(s) 55, 557
CseI GACGC 1 cut(s) 492
Csp6I GTAC 3 cut(s) 682, 1319, 1391
CviAII CATG 6 cut(s) 232, 268, 417, 944, 1270, 1288
CviQI GTAC 3 cut(s) 682, 1319, 1391
DdeI CTNAG 5 cut(s) 507, 600, 761, 1095, 1203
DpnI GATC 9 cut(s) 275, 576, 644, 1055, 1074, 1080, 1356, 1380, 1501
DpnII GATC 9 cut(s) 273, 574, 642, 1053, 1072, 1078, 1354, 1378, 1499
DraI TTTAAA 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 719
Eam1104I CTCTTC 2 cut(s) 1115, 1227
EarI CTCTTC 2 cut(s) 1115, 1227
Eco130I CCWWGG 2 cut(s) 213, 1259
Eco47I GGWCC 2 cut(s) 55, 557
Eco57I CTGAAG 1 cut(s) 333
Eco81I CCTNAGG 1 cut(s) 1203
EcoNI CCTNNNNNAGG 1 cut(s) 1258
EcoT14I CCWWGG 2 cut(s) 213, 1259
ErhI CCWWGG 2 cut(s) 213, 1259
FaeI CATG 6 cut(s) 235, 271, 420, 947, 1273, 1291
FalI AAGNNNNNCTT 1 cut(s) 1571
FaqI GGGAC 3 cut(s) 68, 114, 1475
FatI CATG 6 cut(s) 231, 267, 416, 943, 1269, 1287
FauI CCCGC 2 cut(s) 84, 113
FauNDI CATATG 2 cut(s) 364, 595
FbaI TGATCA 1 cut(s) 1078
FblI GTMKAC 1 cut(s) 808
Fnu4HI GCNGC 6 cut(s) 189, 873, 1172, 1187, 1514, 1571
FokI GGATG 4 cut(s) 179, 396, 397, 939
Fsp4HI GCNGC 6 cut(s) 189, 873, 1172, 1187, 1514, 1571
FspBI CTAG 2 cut(s) 126, 1260
GluI GCNGC 6 cut(s) 189, 873, 1172, 1187, 1514, 1571
GsaI CCCAGC 1 cut(s) 829
GsuI CTGGAG 3 cut(s) 258, 999, 1117
HaeIII GGCC 1 cut(s) 721
HapII CCGG 2 cut(s) 439, 539
HgaI GACGC 1 cut(s) 492
Hin1II CATG 6 cut(s) 235, 271, 420, 947, 1273, 1291
HinfI GANTC 2 cut(s) 1015, 1066
HpaII CCGG 2 cut(s) 439, 539
HphI GGTGA 2 cut(s) 613, 1460
Hpy166II GTNNAC 4 cut(s) 343, 809, 1319, 1321
Hpy188I TCNGA 7 cut(s) 508, 603, 664, 921, 1096, 1478, 1499
Hpy188III TCNNGA 6 cut(s) 311, 693, 966, 1070, 1076, 1194
Hpy8I GTNNAC 4 cut(s) 343, 809, 1319, 1321
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 9 cut(s) 78, 130, 206, 308, 502, 588, 843, 1101, 1439
HpyCH4III ACNGT 1 cut(s) 917
HpyCH4IV ACGT 2 cut(s) 50, 811
HpyCH4V TGCA 7 cut(s) 416, 1189, 1210, 1388, 1513, 1533, 1570
HpyF10VI GCNNNNNNNGC 5 cut(s) 714, 822, 878, 1216, 1519
HpyF3I CTNAG 5 cut(s) 507, 600, 761, 1095, 1203
HpySE526I ACGT 2 cut(s) 50, 811
Hsp92II CATG 6 cut(s) 235, 271, 420, 947, 1273, 1291
Ksp22I TGATCA 1 cut(s) 1078
Kzo9I GATC 9 cut(s) 273, 574, 642, 1053, 1072, 1078, 1354, 1378, 1499
LmnI GCTCC 4 cut(s) 637, 695, 1168, 1556
Lsp1109I GCAGC 5 cut(s) 884, 1173, 1183, 1525, 1582
LweI GCATC 2 cut(s) 418, 826
MaeI CTAG 2 cut(s) 126, 1260
MaeII ACGT 2 cut(s) 50, 811
MaeIII GTNAC 2 cut(s) 158, 782
MalI GATC 9 cut(s) 275, 576, 644, 1055, 1074, 1080, 1356, 1380, 1501
MboI GATC 9 cut(s) 273, 574, 642, 1053, 1072, 1078, 1354, 1378, 1499
MboII GAAGA 5 cut(s) 25, 1132, 1157, 1244, 1591
MfeI CAATTG 2 cut(s) 732, 1350
MflI RGATCY 1 cut(s) 1053
MlsI TGGCCA 1 cut(s) 721
MluCI AATT 4 cut(s) 732, 1004, 1350, 1591
MluNI TGGCCA 1 cut(s) 721
MlyI GAGTC 1 cut(s) 1024
Mox20I TGGCCA 1 cut(s) 721
MscI TGGCCA 1 cut(s) 721
MseI TTAA 6 cut(s) 93, 321, 378, 999, 1152, 1590
MslI CAYNNNNRTG 2 cut(s) 594, 626
Msp20I TGGCCA 1 cut(s) 721
MspI CCGG 2 cut(s) 439, 539
MunI CAATTG 2 cut(s) 732, 1350
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 5 cut(s) 714, 822, 878, 1216, 1519
NdeI CATATG 2 cut(s) 364, 595
NdeII GATC 9 cut(s) 273, 574, 642, 1053, 1072, 1078, 1354, 1378, 1499
NlaIII CATG 6 cut(s) 235, 271, 420, 947, 1273, 1291
NlaIV GGNNCC 3 cut(s) 56, 485, 1308
NmuCI GTSAC 1 cut(s) 782
NspI RCATGY 1 cut(s) 420
OliI CACNNNNGTG 1 cut(s) 626
PaeI GCATGC 1 cut(s) 420
PfeI GAWTC 1 cut(s) 1066
PkrI GCNGC 6 cut(s) 190, 874, 1173, 1188, 1515, 1572
PleI GAGTC 1 cut(s) 1023
PpsI GAGTC 1 cut(s) 1023
PshBI ATTAAT 1 cut(s) 1152
PspFI CCCAGC 1 cut(s) 825
PspN4I GGNNCC 3 cut(s) 56, 485, 1308
PspPI GGNCC 2 cut(s) 55, 557
PstI CTGCAG 3 cut(s) 1390, 1515, 1572
PstNI CAGNNNCTG 2 cut(s) 698, 1519
PsuI RGATCY 1 cut(s) 1053
RsaI GTAC 3 cut(s) 683, 1320, 1392
RsaNI GTAC 3 cut(s) 682, 1319, 1391
RseI CAYNNNNRTG 2 cut(s) 594, 626
SaqAI TTAA 6 cut(s) 93, 321, 378, 999, 1152, 1590
SatI GCNGC 6 cut(s) 189, 873, 1172, 1187, 1514, 1571
Sau3AI GATC 9 cut(s) 273, 574, 642, 1053, 1072, 1078, 1354, 1378, 1499
Sau96I GGNCC 2 cut(s) 55, 557
SchI GAGTC 1 cut(s) 1024
SfaNI GCATC 2 cut(s) 418, 826
SfcI CTRYAG 3 cut(s) 1386, 1511, 1568
SinI GGWCC 2 cut(s) 55, 557
SmiMI CAYNNNNRTG 2 cut(s) 594, 626
SphI GCATGC 1 cut(s) 420
Sse9I AATT 4 cut(s) 732, 1004, 1350, 1591
SsiI CCGC 7 cut(s) 58, 77, 106, 148, 189, 368, 481
SspMI CTAG 2 cut(s) 126, 1260
StyI CCWWGG 2 cut(s) 213, 1259
TaaI ACNGT 1 cut(s) 917
TaiI ACGT 2 cut(s) 53, 814
TaqI TCGA 3 cut(s) 276, 965, 1577
TasI AATT 4 cut(s) 732, 1004, 1350, 1591
TatI WGTACW 1 cut(s) 1318
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 1 cut(s) 1066
Tru1I TTAA 6 cut(s) 93, 321, 378, 999, 1152, 1590
Tru9I TTAA 6 cut(s) 93, 321, 378, 999, 1152, 1590
TscAI CASTG 3 cut(s) 465, 633, 1564
TseFI GTSAC 1 cut(s) 782
TseI GCWGC 5 cut(s) 872, 1171, 1186, 1513, 1570
Tsp45I GTSAC 1 cut(s) 782
TspDTI ATGAA 7 cut(s) 300, 809, 876, 924, 1062, 1304, 1470
TspRI CASTG 3 cut(s) 465, 633, 1564
VpaK11BI GGWCC 2 cut(s) 55, 557
VspI ATTAAT 1 cut(s) 1152
XagI CCTNNNNNAGG 1 cut(s) 1258
XceI RCATGY 1 cut(s) 420
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmaJI CCTAGG 1 cut(s) 1259
XmiI GTMKAC 1 cut(s) 808
XspI CTAG 2 cut(s) 126, 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.