Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005779

Physical Location & Seq

Genomic Coordinates Forward (+)

31351107 .. 31353809

Gene Structure 2703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008501

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCCTGGACACGAAGTTGCCAACAATGACATGATGATCGATGAGTATGAACAGAAGCAAGTGAATGCTGTTCCTGATGGATTTAACTCTCAGTATCTCAAAATTTACTATGGAAAGCTCTTCCCATATGAGGAAATGTTTAAGTGGATGTCCTATGCAAATTATGGCAAGCATCCTGCATGCAACCAGTCCTACTTCGGCCGGAGAGAGTTGTCTTTCACACTGGATAATGATGTTTATCTGCGGTACAAAACTTTCAACTCCGTGTCTGAGCTTGAAAATTCTATCAAAGAGAAGTGCCCCGTCAAAATAGATATTGGGCCTGTGTACAATGTTGATCCTGCAAAGAGGCATTCCTATGCTCAAAGTGGTTGCTACCCTGAGGAGAGGGAATTGATTTTCGATATAGATATGTCAGATTACGATGATGTTAGATACTGCTGCTCGGGAGCTGATGTGTGCCTGGAGTGCTGGCCGCTTATGACAATTGCTATCAAAGTGATTGACACTGCCCTTCGAGATGACTTTGCTAGAAGGCTCACAAATGAACTGAGAGCAGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAATGAAAACAGTCATAAAAAGGTTTCTTTGATGGGCCCTGCTCTTCATCCATTCCTTGTGAGATCATATACCGAAGTTCTTAAGGATTTCTTTGAGAGGACATTGCTTTCCAGTCAAAAGATATTTTCTACTGCAGAGAGATATGAAAAGATCTTAGATACGACTAGCAAATGTTACCCGCGCGTTGCTGCGGGAGTCCTGATTGTTCGTAGTTGTTTAGAAAACGAACATCTAATTGCTACAGTTGTAGAAAGACATGAGCAGCTACTGCACCATGGCAACAGCAAGGCAAACAATGACAACCAGATTCAAGCACATCATCAAACTTTCCAAAAGTTTTCTGATTGCAACGGTAGACTGATCTGCTTAGATACAACTAAGGCACTGTCCCATTTTTTGACTCTGCCAAAGAGTGTAGAAACCATGGTCATCAAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

344

Amino Acids

39.66

Weight (kDa)

6.19

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	134 - 250	2.3e-11	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41880
fragaria_vesca	FvH4_5g04460
malus_domestica	MD06G1105400.v1.1
prunus_persica	Prupe.5G117700_v2.0.a1
pyrus_communis	pycom06g09970
rosa_chinensis	RchiOBHm_Chr7g0195041
rosa_laevigata	RLG00000004150 RLG00000008501 RLG00000015305
rosa_multiflora	Rmu_sc0002246.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260810
rosa_rugosa	Rorug07G0020100 Rorug07G0020200
rosa_samantha	Rh6BG025100 Rh6BG025600 Rh6BG025700 Rh6BG026500 Rh6BG026600 Rh6CG024600 Rh6DG024100 Rh6DG024400 Rh7AG147700 Rh7BG148300 Rh7CG152000
rosa_wichuraiana	Rw2G021680 Rw5G042100 Rw6G002490 Rw7G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	582, 946
AccII	CGCG	2 cut(s)	772, 774
AciI	CCGC	4 cut(s)	244, 476, 770, 782
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	2 cut(s)	199, 473
AcsI	RAATTY	2 cut(s)	102, 280
AfaI	GTAC	2 cut(s)	248, 329
AfiI	CCNNNNNNNGG	1 cut(s)	130
AflII	CTTAAG	1 cut(s)	671
AgsI	TTSAA	3 cut(s)	259, 278, 902
AjnI	CCWGG	2 cut(s)	4, 462
AluBI	AGCT	5 cut(s)	118, 274, 452, 560, 856
AluI	AGCT	5 cut(s)	118, 274, 452, 560, 856
AlwI	GGATC	1 cut(s)	332
AlwNI	CAGNNNCTG	1 cut(s)	859
Ama87I	CYCGRG	1 cut(s)	445
AoxI	GGCC	4 cut(s)	199, 320, 473, 625
ApaI	GGGCCC	1 cut(s)	629
ApeKI	GCWGC	4 cut(s)	441, 557, 779, 853
ApoI	RAATTY	2 cut(s)	102, 280
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	3 cut(s)	320, 625, 626
AvaI	CYCGRG	1 cut(s)	445
AxyI	CCTNAGG	1 cut(s)	381
BaeGI	GKGCMC	2 cut(s)	302, 629
BanII	GRGCYC	1 cut(s)	629
BbvI	GCAGC	4 cut(s)	428, 569, 766, 865
BccI	CCATC	2 cut(s)	71, 616
BciT130I	CCWGG	2 cut(s)	6, 464
BfaI	CTAG	2 cut(s)	531, 756
BfmI	CTRYAG	2 cut(s)	723, 831
BfrI	CTTAAG	1 cut(s)	671
BglII	AGATCT	1 cut(s)	741
BisI	GCNGC	5 cut(s)	442, 476, 558, 780, 854
BlsI	GCNGC	5 cut(s)	443, 477, 559, 781, 855
Bme1390I	CCNGG	2 cut(s)	6, 464
BmeT110I	CYCGRG	1 cut(s)	445
BmgT120I	GGNCC	3 cut(s)	320, 625, 626
BmiI	GGNNCC	1 cut(s)	627
BmrFI	CCNGG	2 cut(s)	6, 464
BmsI	GCATC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	485
Bsa29I	ATCGAT	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	865, 1014
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	3 cut(s)	187, 228, 702
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	2 cut(s)	598, 692
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	6, 464
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	865, 1014
BseGI	GGATG	3 cut(s)	153, 172, 637
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMI	GCAATG	2 cut(s)	598, 692
BseMII	CTCAG	4 cut(s)	104, 261, 372, 542
BseNI	ACTGG	3 cut(s)	187, 228, 702
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	2 cut(s)	302, 629
BseX3I	CGGCCG	1 cut(s)	199
BseXI	GCAGC	4 cut(s)	428, 569, 766, 865
BsgI	GTGCAG	1 cut(s)	845
Bsh1236I	CGCG	2 cut(s)	772, 774
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	4 cut(s)	201, 322, 475, 627
BshVI	ATCGAT	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	964
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	964
BsmI	GAATGC	2 cut(s)	70, 352
BsnI	GGCC	4 cut(s)	201, 322, 475, 627
BsoBI	CYCGRG	1 cut(s)	445
Bsp120I	GGGCCC	1 cut(s)	625
Bsp1286I	GDGCHC	2 cut(s)	302, 629
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	5 cut(s)	36, 337, 653, 741, 951
Bsp19I	CCATGG	2 cut(s)	865, 1014
BspACI	CCGC	4 cut(s)	244, 476, 770, 782
BspANI	GGCC	4 cut(s)	201, 322, 475, 627
BspCNI	CTCAG	4 cut(s)	103, 262, 373, 543
BspDI	ATCGAT	1 cut(s)	39
BspFNI	CGCG	2 cut(s)	772, 774
BspLI	GGNNCC	1 cut(s)	627
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	1 cut(s)	332
BspQI	GCTCTTC	2 cut(s)	125, 639
BspTI	CTTAAG	1 cut(s)	671
BsrDI	GCAATG	2 cut(s)	598, 692
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	3 cut(s)	187, 228, 702
BssECI	CCNNGG	2 cut(s)	865, 1014
BssMI	GATC	5 cut(s)	36, 337, 653, 741, 951
BssT1I	CCWWGG	2 cut(s)	865, 1014
Bst2UI	CCWGG	2 cut(s)	6, 464
Bst4CI	ACNGT	4 cut(s)	602, 835, 944, 978
Bst6I	CTCTTC	2 cut(s)	125, 639
BstAFI	CTTAAG	1 cut(s)	671
BstAPI	GCANNNNNTGC	2 cut(s)	563, 859
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	170, 181, 473
BstDEI	CTNAG	7 cut(s)	90, 270, 381, 551, 745, 958, 969
BstDSI	CCRYGG	2 cut(s)	865, 1014
BstF5I	GGATG	3 cut(s)	153, 172, 637
BstFNI	CGCG	2 cut(s)	772, 774
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	5 cut(s)	39, 340, 656, 744, 954
BstMBI	GATC	5 cut(s)	36, 337, 653, 741, 951
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	3 cut(s)	468, 563, 859
BstNI	CCWGG	2 cut(s)	6, 464
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	2 cut(s)	4, 462
BstSFI	CTRYAG	2 cut(s)	723, 831
BstSLI	GKGCMC	2 cut(s)	302, 629
BstUI	CGCG	2 cut(s)	772, 774
BstV1I	GCAGC	4 cut(s)	428, 569, 766, 865
BstX2I	RGATCY	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	741
BstZI	CGGCCG	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	4 cut(s)	201, 322, 475, 627
BsuTUI	ATCGAT	1 cut(s)	39
BtgI	CCRYGG	2 cut(s)	865, 1014
BtsCI	GGATG	3 cut(s)	153, 172, 637
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	3 cut(s)	221, 507, 974
Cac8I	GCNNGC	3 cut(s)	170, 181, 473
CaiI	CAGNNNCTG	1 cut(s)	859
CfoI	GCGC	1 cut(s)	774
Cfr13I	GGNCC	3 cut(s)	320, 625, 626
ClaI	ATCGAT	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	247, 328
CviAII	CATG	5 cut(s)	31, 180, 848, 866, 1015
CviQI	GTAC	2 cut(s)	247, 328
DdeI	CTNAG	7 cut(s)	90, 270, 381, 551, 745, 958, 969
DpnI	GATC	5 cut(s)	38, 339, 655, 743, 953
DpnII	GATC	5 cut(s)	36, 337, 653, 741, 951
EaeI	YGGCCR	2 cut(s)	199, 473
EagI	CGGCCG	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	125, 639
EarI	CTCTTC	2 cut(s)	125, 639
EclXI	CGGCCG	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	865, 1014
Eco24I	GRGCYC	1 cut(s)	629
Eco52I	CGGCCG	1 cut(s)	199
Eco81I	CCTNAGG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	4, 462
EcoT14I	CCWWGG	2 cut(s)	865, 1014
EcoT38I	GRGCYC	1 cut(s)	629
ErhI	CCWWGG	2 cut(s)	865, 1014
FaeI	CATG	5 cut(s)	34, 183, 851, 869, 1018
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FaqI	GGGAC	1 cut(s)	964
FatI	CATG	5 cut(s)	30, 179, 847, 865, 1014
FauI	CCCGC	2 cut(s)	775, 777
FauNDI	CATATG	1 cut(s)	127
FblI	GTMKAC	2 cut(s)	582, 946
Fnu4HI	GCNGC	5 cut(s)	442, 476, 558, 780, 854
FokI	GGATG	3 cut(s)	159, 160, 624
FriOI	GRGCYC	1 cut(s)	629
Fsp4HI	GCNGC	5 cut(s)	442, 476, 558, 780, 854
FspBI	CTAG	2 cut(s)	531, 756
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	5 cut(s)	442, 476, 558, 780, 854
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	4 cut(s)	201, 322, 475, 627
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	1 cut(s)	774
Hin1II	CATG	5 cut(s)	34, 183, 851, 869, 1018
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HinfI	GANTC	3 cut(s)	786, 898, 991
HpaII	CCGG	1 cut(s)	202
Hpy166II	GTNNAC	3 cut(s)	328, 583, 947
Hpy188I	TCNGA	3 cut(s)	271, 418, 934
Hpy188III	TCNNGA	4 cut(s)	74, 447, 518, 790
Hpy8I	GTNNAC	3 cut(s)	328, 583, 947
HpyAV	CCTTC	2 cut(s)	524, 528
HpyCH4III	ACNGT	4 cut(s)	602, 835, 944, 978
HpyCH4V	TGCA	7 cut(s)	158, 179, 183, 344, 725, 862, 939
HpyF10VI	GCNNNNNNNGC	3 cut(s)	468, 563, 859
HpyF3I	CTNAG	7 cut(s)	90, 270, 381, 551, 745, 958, 969
Hsp92II	CATG	5 cut(s)	34, 183, 851, 869, 1018
HspAI	GCGC	1 cut(s)	772
Kzo9I	GATC	5 cut(s)	36, 337, 653, 741, 951
LguI	GCTCTTC	2 cut(s)	125, 639
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	4 cut(s)	428, 569, 766, 865
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	531, 756
MaeIII	GTNAC	1 cut(s)	764
MalI	GATC	5 cut(s)	38, 339, 655, 743, 953
MboI	GATC	5 cut(s)	36, 337, 653, 741, 951
MboII	GAAGA	2 cut(s)	112, 626
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	741
MhlI	GDGCHC	2 cut(s)	302, 629
MluCI	AATT	6 cut(s)	102, 160, 280, 392, 486, 825
MlyI	GAGTC	2 cut(s)	795, 985
MnlI	CCTC	5 cut(s)	124, 342, 376, 381, 681
MseI	TTAA	3 cut(s)	84, 141, 672
MslI	CAYNNNNRTG	1 cut(s)	357
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	6, 464
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	2 cut(s)	70, 352
MvaI	CCWGG	2 cut(s)	6, 464
MvnI	CGCG	2 cut(s)	772, 774
MwoI	GCNNNNNNNGC	3 cut(s)	468, 563, 859
NcoI	CCATGG	2 cut(s)	865, 1014
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	5 cut(s)	36, 337, 653, 741, 951
NlaIII	CATG	5 cut(s)	34, 183, 851, 869, 1018
NlaIV	GGNNCC	1 cut(s)	627
NspI	RCATGY	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	183
PciSI	GCTCTTC	2 cut(s)	125, 639
PctI	GAATGC	2 cut(s)	70, 352
PfeI	GAWTC	1 cut(s)	898
PkrI	GCNGC	5 cut(s)	443, 477, 559, 781, 855
PleI	GAGTC	2 cut(s)	794, 985
PpsI	GAGTC	2 cut(s)	794, 985
Psp6I	CCWGG	2 cut(s)	4, 462
PspGI	CCWGG	2 cut(s)	4, 462
PspN4I	GGNNCC	1 cut(s)	627
PspOMI	GGGCCC	1 cut(s)	625
PspPI	GGNCC	3 cut(s)	320, 625, 626
PstI	CTGCAG	1 cut(s)	727
PstNI	CAGNNNCTG	1 cut(s)	859
PsuI	RGATCY	1 cut(s)	741
RsaI	GTAC	2 cut(s)	248, 329
RsaNI	GTAC	2 cut(s)	247, 328
RseI	CAYNNNNRTG	1 cut(s)	357
SapI	GCTCTTC	2 cut(s)	125, 639
SaqAI	TTAA	3 cut(s)	84, 141, 672
SatI	GCNGC	5 cut(s)	442, 476, 558, 780, 854
Sau3AI	GATC	5 cut(s)	36, 337, 653, 741, 951
Sau96I	GGNCC	3 cut(s)	320, 625, 626
SchI	GAGTC	2 cut(s)	795, 985
ScrFI	CCNGG	2 cut(s)	6, 464
SduI	GDGCHC	2 cut(s)	302, 629
SetI	ASST	6 cut(s)	120, 276, 454, 562, 615, 858
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	2 cut(s)	723, 831
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	6 cut(s)	102, 160, 280, 392, 486, 825
SsiI	CCGC	4 cut(s)	244, 476, 770, 782
SspMI	CTAG	2 cut(s)	531, 756
StyD4I	CCNGG	2 cut(s)	4, 462
StyI	CCWWGG	2 cut(s)	865, 1014
TaaI	ACNGT	4 cut(s)	602, 835, 944, 978
TaqI	TCGA	3 cut(s)	39, 402, 517
TasI	AATT	6 cut(s)	102, 160, 280, 392, 486, 825
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	1 cut(s)	898
Tru1I	TTAA	3 cut(s)	84, 141, 672
Tru9I	TTAA	3 cut(s)	84, 141, 672
TscAI	CASTG	3 cut(s)	228, 514, 981
TseI	GCWGC	4 cut(s)	441, 557, 779, 853
TspDTI	ATGAA	5 cut(s)	63, 561, 609, 626, 750
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	3 cut(s)	228, 514, 981
Vha464I	CTTAAG	1 cut(s)	671
XapI	RAATTY	2 cut(s)	102, 280
XceI	RCATGY	1 cut(s)	183
XmiI	GTMKAC	2 cut(s)	582, 946
XspI	CTAG	2 cut(s)	531, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.