Rw7G012610

Belongs to the eukaryotic-type primase small subunit family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
11965462 .. 11969762
4301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G012610.1

Sequence Viewer

Length: 1368 bp
ATGCCTGGACACGAAGTTGCCAAAGATGACATGATGATCGATGAGTATGAACAGAAGCAAGTGAATGCTGTTCCTGATGGATTTAACTCTCAGTATCTCAAAATTTACTATGGAAAGCTCTTCCCATATGAGGAAATGTTTAAATGGATGTCCTATGCAAATGATGGCAAGCATCCTGCATGCAACCAGTCCTACTTTGGCCGGAGAGAGTTTTCTTTCACACTGGATAATGATGTTTATCTGCGGTACAAAACTTTCAACTCCGTGTCTGAGCTTGAAAATTCTATCAAAGAGAAGTGCCCTGTCAAAATAGATATTGGGCCTGTGTACAATGTTGATCCTGCAAAGAGGCATTCCTATGCTCAAAGTGGTTGCTACCCCGAGGAGAGGGAACTGATTTTTGATATAGATATGTCAGATTACGATGATGTTAGATACTGCTGCTCAGGAGCTGATGTCTGCCTGGAGTGCTGGCCGCTTATGACAATTGCTATCAAAGTGATTGACACTGCCCTTCGAGATGACTTTGGTTTCAATCACATTCTCTGGGTATATAGTGGCCGACGTGGTGTTCATTGTTGGGTTTGTGATGGGAAAGCTAGAAGGCTCACAAATGAACTGAGAGCAGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAATGAAAACAGTCATAAAAAGGTTTCGTTGATGGGCCCTGCTCTTCATCCATTCCTTGTGAGATCATATACTGAAGTTCTTAAGGATTTCTTTGAGAGGACATTGCTTTCCAGTCAAAAGATATTTTCTACTGCAGAGAGATATGAAAAGATCTTAGATATGATTCCTGATGAATCTGTCACTTCTGAGCTTCGGGGAAAGTGGCAAGATAATAGACGAACCTCCAATGCAAAAGAAGACATTAATGTTGCTCGTTGGGAGCAGCTGAAACATTTGCTGCAATCTGGGAAACAGAAGATGCAAGGACTGCGTAGATGTGTGGAGGAGATTGTGTTCTCTTATACCTACCCTAGACTTGACATGGAGGTTTCAAAACATATGAACCATTTATTAAAGGCACCATTCTGTGTACATCCAAAGACAGGTCGTGTTTGTGTTCCAATTGATCCCAACCATTGTGAGGATTTTGATCCTACTGCAGTTCCAACCCTTTCCACTCTTATAGAAGAACTTAATAATGAGGGTTTGAGAGCAGAGGCTGATAACGACCGGGATAGAACGTCACTTGGAAAATCAATAAGATTCTTCCAATCATCATTTTTGGAGCCTTTGGTAAAATCTTGCAAGGAGGAGATGATAAGTTCCTACAATGCGAAACTGCAGCAGTCGAAGTTGCAGCAGTCAAAGAACGTGCTTGCTGCAATCTAG

Protein Analysis

455

Amino Acids

52.77

Weight (kDa)

6.22

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_primase_S PF01896 134 - 369 3.6e-54 DNA primase small subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1057
AccI GTMKAC 1 cut(s) 651
AciI CCGC 2 cut(s) 244, 476
AclWI GGATC 3 cut(s) 332, 1100, 1124
AcoI YGGCCR 3 cut(s) 199, 473, 559
AcsI RAATTY 2 cut(s) 102, 280
AcuI CTGAAG 1 cut(s) 753
AfaI GTAC 3 cut(s) 248, 329, 1071
AfiI CCNNNNNNNGG 4 cut(s) 130, 387, 1082, 1120
AflII CTTAAG 1 cut(s) 740
AgsI TTSAA 4 cut(s) 259, 278, 535, 1032
AjiI CACGTC 1 cut(s) 566
AjnI CCWGG 2 cut(s) 4, 462
AloI GAACNNNNNNTCC 2 cut(s) 977, 1009
AluBI AGCT 7 cut(s) 118, 274, 452, 599, 629, 850, 925
AluI AGCT 7 cut(s) 118, 274, 452, 599, 629, 850, 925
AlwI GGATC 3 cut(s) 332, 1100, 1124
AlwNI CAGNNNCTG 2 cut(s) 452, 1199
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 5 cut(s) 199, 320, 473, 559, 694
ApaI GGGCCC 1 cut(s) 698
ApeKI GCWGC 7 cut(s) 441, 626, 922, 937, 1321, 1336, 1358
ApoI RAATTY 2 cut(s) 102, 280
AseI ATTAAT 1 cut(s) 903
AspS9I GGNCC 3 cut(s) 320, 694, 695
AsuC2I CCSGG 1 cut(s) 1211
AvaI CYCGRG 1 cut(s) 380
BaeGI GKGCMC 2 cut(s) 302, 698
BanI GGYRCC 1 cut(s) 1057
BanII GRGCYC 1 cut(s) 698
BbsI GAAGAC 1 cut(s) 903
BbvI GCAGC 7 cut(s) 428, 638, 924, 934, 1333, 1345, 1348
BccI CCATC 4 cut(s) 71, 158, 584, 685
BciT130I CCWGG 2 cut(s) 6, 464
BcnI CCSGG 1 cut(s) 1211
BfaI CTAG 3 cut(s) 600, 1011, 1366
BfmI CTRYAG 3 cut(s) 792, 1137, 1319
BfrI CTTAAG 1 cut(s) 740
BglII AGATCT 1 cut(s) 810
BisI GCNGC 8 cut(s) 442, 476, 627, 923, 938, 1322, 1337, 1359
BlsI GCNGC 8 cut(s) 443, 477, 628, 924, 939, 1323, 1338, 1360
Bme1390I CCNGG 3 cut(s) 6, 464, 1211
BmeT110I CYCGRG 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 566
BmgT120I GGNCC 3 cut(s) 320, 694, 695
BmiI GGNNCC 3 cut(s) 696, 1059, 1266
BmrFI CCNGG 3 cut(s) 6, 464, 1211
BmsI GCATC 2 cut(s) 181, 948
BpiI GAAGAC 1 cut(s) 903
BpmI CTGGAG 1 cut(s) 485
Bpu10I CCTNAGC 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 1211
Bsa29I ATCGAT 1 cut(s) 39
BsaBI GATNNNNATC 2 cut(s) 237, 1128
BsaJI CCNNGG 1 cut(s) 381
BsaXI ACNNNNNCTCC 4 cut(s) 441, 471, 977, 1007
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 387, 1082, 1120
Bse1I ACTGG 3 cut(s) 187, 228, 771
Bse3DI GCAATG 2 cut(s) 667, 761
Bse8I GATNNNNATC 2 cut(s) 237, 1128
BseBI CCWGG 2 cut(s) 6, 464
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 4 cut(s) 153, 172, 706, 1072
BseJI GATNNNNATC 2 cut(s) 237, 1128
BseLI CCNNNNNNNGG 4 cut(s) 130, 387, 1082, 1120
BseMI GCAATG 2 cut(s) 667, 761
BseMII CTCAG 5 cut(s) 104, 261, 459, 611, 837
BseNI ACTGG 3 cut(s) 187, 228, 771
BseRI GAGGAG 3 cut(s) 398, 998, 1304
BseSI GKGCMC 2 cut(s) 302, 698
BseXI GCAGC 7 cut(s) 428, 638, 924, 934, 1333, 1345, 1348
Bsh1285I CGRYCG 1 cut(s) 1210
BshFI GGCC 5 cut(s) 201, 322, 475, 561, 696
BshNI GGYRCC 1 cut(s) 1057
BshVI ATCGAT 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 1210
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 2 cut(s) 202, 1210
BslI CCNNNNNNNGG 4 cut(s) 130, 387, 1082, 1120
BsmI GAATGC 2 cut(s) 70, 352
BsnI GGCC 5 cut(s) 201, 322, 475, 561, 696
BsoBI CYCGRG 1 cut(s) 380
Bsp120I GGGCCC 1 cut(s) 694
Bsp1286I GDGCHC 2 cut(s) 302, 698
Bsp1407I TGTACA 2 cut(s) 327, 1069
Bsp143I GATC 6 cut(s) 36, 337, 722, 810, 1105, 1129
BspACI CCGC 2 cut(s) 244, 476
BspANI GGCC 5 cut(s) 201, 322, 475, 561, 696
BspCNI CTCAG 5 cut(s) 103, 262, 458, 612, 838
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 3 cut(s) 696, 1059, 1266
BspMAI CTGCAG 3 cut(s) 796, 1141, 1323
BspPI GGATC 3 cut(s) 332, 1100, 1124
BspQI GCTCTTC 2 cut(s) 125, 708
BspT107I GGYRCC 1 cut(s) 1057
BspTI CTTAAG 1 cut(s) 740
BsrDI GCAATG 2 cut(s) 667, 761
BsrGI TGTACA 2 cut(s) 327, 1069
BsrI ACTGG 3 cut(s) 187, 228, 771
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 6 cut(s) 36, 337, 722, 810, 1105, 1129
Bst2UI CCWGG 2 cut(s) 6, 464
Bst4CI ACNGT 1 cut(s) 671
Bst6I CTCTTC 2 cut(s) 125, 708
BstAFI CTTAAG 1 cut(s) 740
BstAPI GCANNNNNTGC 2 cut(s) 632, 967
BstAUI TGTACA 2 cut(s) 327, 1069
BstC8I GCNNGC 4 cut(s) 170, 181, 473, 1356
BstDEI CTNAG 6 cut(s) 90, 270, 445, 620, 814, 846
BstF5I GGATG 4 cut(s) 153, 172, 706, 1072
BstKTI GATC 6 cut(s) 39, 340, 725, 813, 1108, 1132
BstMBI GATC 6 cut(s) 36, 337, 722, 810, 1105, 1129
BstMCI CGRYCG 1 cut(s) 1210
BstMWI GCNNNNNNNGC 3 cut(s) 468, 632, 967
BstNI CCWGG 2 cut(s) 6, 464
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 3 cut(s) 4, 462, 1209
BstSFI CTRYAG 3 cut(s) 792, 1137, 1319
BstSLI GKGCMC 2 cut(s) 302, 698
BstV1I GCAGC 7 cut(s) 428, 638, 924, 934, 1333, 1345, 1348
BstV2I GAAGAC 1 cut(s) 903
BstX2I RGATCY 1 cut(s) 810
BstYI RGATCY 1 cut(s) 810
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 5 cut(s) 201, 322, 475, 561, 696
BsuTUI ATCGAT 1 cut(s) 39
BtrI CACGTC 1 cut(s) 566
BtsCI GGATG 4 cut(s) 153, 172, 706, 1072
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 2 cut(s) 221, 507
Cac8I GCNNGC 4 cut(s) 170, 181, 473, 1356
CaiI CAGNNNCTG 2 cut(s) 452, 1199
Cfr13I GGNCC 3 cut(s) 320, 694, 695
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 3 cut(s) 247, 328, 1070
CviAII CATG 3 cut(s) 31, 180, 1021
CviQI GTAC 3 cut(s) 247, 328, 1070
DdeI CTNAG 6 cut(s) 90, 270, 445, 620, 814, 846
DpnI GATC 6 cut(s) 38, 339, 724, 812, 1107, 1131
DpnII GATC 6 cut(s) 36, 337, 722, 810, 1105, 1129
DraI TTTAAA 1 cut(s) 142
EaeI YGGCCR 3 cut(s) 199, 473, 559
Eam1104I CTCTTC 2 cut(s) 125, 708
EarI CTCTTC 2 cut(s) 125, 708
Eco24I GRGCYC 1 cut(s) 698
Eco57I CTGAAG 1 cut(s) 753
Eco88I CYCGRG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 695
EcoRII CCWGG 2 cut(s) 4, 462
EcoT38I GRGCYC 1 cut(s) 698
FaeI CATG 3 cut(s) 34, 183, 1024
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FatI CATG 3 cut(s) 30, 179, 1020
FauNDI CATATG 2 cut(s) 127, 1038
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 8 cut(s) 442, 476, 627, 923, 938, 1322, 1337, 1359
FokI GGATG 4 cut(s) 159, 160, 693, 1059
FriOI GRGCYC 1 cut(s) 698
Fsp4HI GCNGC 8 cut(s) 442, 476, 627, 923, 938, 1322, 1337, 1359
FspBI CTAG 3 cut(s) 600, 1011, 1366
GluI GCNGC 8 cut(s) 442, 476, 627, 923, 938, 1322, 1337, 1359
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 5 cut(s) 201, 322, 475, 561, 696
HapII CCGG 2 cut(s) 202, 1210
Hin1II CATG 3 cut(s) 34, 183, 1024
HinfI GANTC 3 cut(s) 823, 833, 1242
HpaII CCGG 2 cut(s) 202, 1210
Hpy166II GTNNAC 3 cut(s) 328, 652, 1070
Hpy188I TCNGA 3 cut(s) 271, 418, 847
Hpy188III TCNNGA 4 cut(s) 74, 447, 518, 827
Hpy8I GTNNAC 3 cut(s) 328, 652, 1070
Hpy99I CGWCG 1 cut(s) 567
HpyAV CCTTC 2 cut(s) 524, 597
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4IV ACGT 3 cut(s) 565, 1220, 1350
HpyF10VI GCNNNNNNNGC 3 cut(s) 468, 632, 967
HpyF3I CTNAG 6 cut(s) 90, 270, 445, 620, 814, 846
HpySE526I ACGT 3 cut(s) 565, 1220, 1350
Hsp92II CATG 3 cut(s) 34, 183, 1024
Kzo9I GATC 6 cut(s) 36, 337, 722, 810, 1105, 1129
LguI GCTCTTC 2 cut(s) 125, 708
LmnI GCTCC 3 cut(s) 449, 919, 1264
Lsp1109I GCAGC 7 cut(s) 428, 638, 924, 934, 1333, 1345, 1348
LweI GCATC 2 cut(s) 181, 948
MaeI CTAG 3 cut(s) 600, 1011, 1366
MaeII ACGT 3 cut(s) 565, 1220, 1350
MaeIII GTNAC 2 cut(s) 838, 1221
MalI GATC 6 cut(s) 38, 339, 724, 812, 1107, 1131
MboI GATC 6 cut(s) 36, 337, 722, 810, 1105, 1129
MboII GAAGA 6 cut(s) 112, 695, 908, 967, 1178, 1237
MfeI CAATTG 2 cut(s) 486, 1101
MflI RGATCY 1 cut(s) 810
MhlI GDGCHC 2 cut(s) 302, 698
MluCI AATT 4 cut(s) 102, 280, 486, 1101
MmeI TCCRAC 1 cut(s) 1169
MseI TTAA 6 cut(s) 84, 141, 741, 903, 1052, 1173
MslI CAYNNNNRTG 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 925
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 2 cut(s) 202, 1210
MspR9I CCNGG 3 cut(s) 6, 464, 1211
MunI CAATTG 2 cut(s) 486, 1101
Mva1269I GAATGC 2 cut(s) 70, 352
MvaI CCWGG 2 cut(s) 6, 464
MwoI GCNNNNNNNGC 3 cut(s) 468, 632, 967
NciI CCSGG 1 cut(s) 1211
NdeI CATATG 2 cut(s) 127, 1038
NdeII GATC 6 cut(s) 36, 337, 722, 810, 1105, 1129
NlaIII CATG 3 cut(s) 34, 183, 1024
NlaIV GGNNCC 3 cut(s) 696, 1059, 1266
NmuCI GTSAC 2 cut(s) 838, 1221
NspI RCATGY 1 cut(s) 183
PaeI GCATGC 1 cut(s) 183
PciSI GCTCTTC 2 cut(s) 125, 708
PctI GAATGC 2 cut(s) 70, 352
PfeI GAWTC 3 cut(s) 823, 833, 1242
PkrI GCNGC 8 cut(s) 443, 477, 628, 924, 939, 1323, 1338, 1360
PshBI ATTAAT 1 cut(s) 903
Psp6I CCWGG 2 cut(s) 4, 462
PspGI CCWGG 2 cut(s) 4, 462
PspN4I GGNNCC 3 cut(s) 696, 1059, 1266
PspOMI GGGCCC 1 cut(s) 694
PspPI GGNCC 3 cut(s) 320, 694, 695
PstI CTGCAG 3 cut(s) 796, 1141, 1323
PstNI CAGNNNCTG 2 cut(s) 452, 1199
PsuI RGATCY 1 cut(s) 810
PvuII CAGCTG 1 cut(s) 925
RsaI GTAC 3 cut(s) 248, 329, 1071
RsaNI GTAC 3 cut(s) 247, 328, 1070
RseI CAYNNNNRTG 1 cut(s) 357
SapI GCTCTTC 2 cut(s) 125, 708
SaqAI TTAA 6 cut(s) 84, 141, 741, 903, 1052, 1173
SatI GCNGC 8 cut(s) 442, 476, 627, 923, 938, 1322, 1337, 1359
Sau3AI GATC 6 cut(s) 36, 337, 722, 810, 1105, 1129
Sau96I GGNCC 3 cut(s) 320, 694, 695
ScrFI CCNGG 3 cut(s) 6, 464, 1211
SduI GDGCHC 2 cut(s) 302, 698
SfaNI GCATC 2 cut(s) 181, 948
SfcI CTRYAG 3 cut(s) 792, 1137, 1319
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
SphI GCATGC 1 cut(s) 183
Sse9I AATT 4 cut(s) 102, 280, 486, 1101
SsiI CCGC 2 cut(s) 244, 476
SspMI CTAG 3 cut(s) 600, 1011, 1366
StyD4I CCNGG 3 cut(s) 4, 462, 1209
TaaI ACNGT 1 cut(s) 671
TaiI ACGT 3 cut(s) 568, 1223, 1353
TaqI TCGA 3 cut(s) 39, 517, 1328
TasI AATT 4 cut(s) 102, 280, 486, 1101
TatI WGTACW 2 cut(s) 327, 1069
TauI GCSGC 1 cut(s) 478
TfiI GAWTC 3 cut(s) 823, 833, 1242
Tru1I TTAA 6 cut(s) 84, 141, 741, 903, 1052, 1173
Tru9I TTAA 6 cut(s) 84, 141, 741, 903, 1052, 1173
TscAI CASTG 2 cut(s) 228, 514
TseFI GTSAC 2 cut(s) 838, 1221
TseI GCWGC 7 cut(s) 441, 626, 922, 937, 1321, 1336, 1358
Tsp45I GTSAC 2 cut(s) 838, 1221
TspDTI ATGAA 8 cut(s) 63, 563, 630, 678, 695, 819, 846, 1055
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 2 cut(s) 228, 514
Vha464I CTTAAG 1 cut(s) 740
VspI ATTAAT 1 cut(s) 903
XapI RAATTY 2 cut(s) 102, 280
XceI RCATGY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 651
XspI CTAG 3 cut(s) 600, 1011, 1366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.