Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005779

Physical Location & Seq

Genomic Coordinates Forward (+)

73828678 .. 73834006

Gene Structure 5329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G042100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGCCTGCCAACGATGACATGATGATCGATGAGTATGAACAGAAGCAAGTGACTGCTGTTCCTGATGGATTTAAATCTCACTATCTCAAAATTTACTGTGAATTTTCTTTCACACTGGATAATGATCTTGAAAATTCTATCAAAGAGAAGTGCCCCGTCAAAATAGATATTGGGCCTGTGTACAATGTTGATCCTGCAAAGAGGCATTCCTATGCTCAAAATGGTTGCTACCCTGAGGAGAGGGAACTGATTTTTGATATAGATATGTCAGATTACAATGATGTTAAATACTGCTGCTCAGGAGCTGATGTGTGCCTGGAATGCTGGCCGCTTATGACAATTGCTATCAAAGTATGTAGTGGCCGACGTGGTGTTCATTGTTGGGTTTGTGATGGGAAAGCTAGAAGGCTCACAAATGAACTGAGAGCAGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAACGAAAACAGTCATAAAAAGTTTTCTTTGATGGGCTCTGCTCTTCATCCATTCCTTGTGAGATCATATACTGAAGTTCTTAAGGATTTCTTTGAGAGGACATCGCTTTCCAGTCAAAAGATATTTTATACTCTCAGGGGAAAGTGGCAAGATAATAGACGAACCTCCAATGCAAAAGAAGACATTAATATTGCTCGTTGGGAGCAGCTGAAACATTTGCTGCAATCTGGAAAACAGAAGATGCAAGGACTGCCTAGATGCGTGGAGGAGATTGTGTTCTCTTATACCTACCCTAGACTTGACATGGAGGTTTCAAAACATATGAACCATTTATTAAAGGCACCATTCTGTGTATATCCAAAGACGGGTCGTGTTTGTGTTCCGATTGATATCACCCGTTGCGAGGAGTTTGATCCTACTGCAGTTCCAACCCTTTCCACTGCGGTGACAACAGCGCGCGGCTTGCAGGAGGGAGGCAGGAGGCATCCCGGACGAGTTGCAACTCTATCTCGATCTGAAAAGAAAGAACAAGAAGGAAAAAAGCAAATTCCAAATTTCCAGGTATTGTTCTGTGCTCCTGTGTTTATCAATCATCATTCAAATCCATGTACTTCAAAATTTCAGACCAATAGGTCCTTGCAGTCTAAAAGTCGCGGCGAAATGTCTATTATGCCCTCAGTTCTTTTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

384

Amino Acids

44.17

Weight (kDa)

8.66

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	85 - 285	3.1e-35	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41880
fragaria_vesca	FvH4_5g04460
malus_domestica	MD06G1105400.v1.1
prunus_persica	Prupe.5G117700_v2.0.a1
pyrus_communis	pycom06g09970
rosa_chinensis	RchiOBHm_Chr7g0195041
rosa_laevigata	RLG00000004150 RLG00000008501 RLG00000015305
rosa_multiflora	Rmu_sc0002246.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260810
rosa_rugosa	Rorug07G0020100 Rorug07G0020200
rosa_samantha	Rh6BG025100 Rh6BG025600 Rh6BG025700 Rh6BG026500 Rh6BG026600 Rh6CG024600 Rh6DG024100 Rh6DG024400 Rh7AG147700 Rh7BG148300 Rh7CG152000
rosa_wichuraiana	Rw2G021680 Rw5G042100 Rw6G002490 Rw7G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1093
AccB1I	GGYRCC	1 cut(s)	802
AccI	GTMKAC	1 cut(s)	453
AccII	CGCG	3 cut(s)	919, 921, 1116
AciI	CCGC	4 cut(s)	329, 905, 921, 1116
AclWI	GGATC	2 cut(s)	185, 869
AcoI	YGGCCR	2 cut(s)	326, 361
AcsI	RAATTY	6 cut(s)	90, 101, 133, 1008, 1015, 1079
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	2 cut(s)	182, 1072
AfiI	CCNNNNNNNGG	2 cut(s)	827, 865
AflII	CTTAAG	1 cut(s)	542
AgsI	TTSAA	4 cut(s)	131, 777, 1062, 1077
AjiI	CACGTC	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	315, 1020
AleI	CACNNNNGTG	1 cut(s)	905
AloI	GAACNNNNNNTCC	2 cut(s)	722, 754
AluBI	AGCT	4 cut(s)	305, 401, 431, 670
AluI	AGCT	4 cut(s)	305, 401, 431, 670
Alw21I	GWGCWC	1 cut(s)	1039
AlwI	GGATC	2 cut(s)	185, 869
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	173, 326, 361
ApeKI	GCWGC	4 cut(s)	294, 428, 667, 682
ApoI	RAATTY	6 cut(s)	90, 101, 133, 1008, 1015, 1079
AseI	ATTAAT	1 cut(s)	648
AspLEI	GCGC	2 cut(s)	919, 921
AspS9I	GGNCC	2 cut(s)	173, 1095
AsuC2I	CCSGG	1 cut(s)	951
AsuHPI	GGTGA	2 cut(s)	847, 919
AvaII	GGWCC	1 cut(s)	1095
AxyI	CCTNAGG	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	802
BanII	GRGCYC	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	1039
BbvI	GCAGC	4 cut(s)	281, 440, 669, 679
BccI	CCATC	3 cut(s)	59, 386, 487
BciT130I	CCWGG	2 cut(s)	317, 1022
BcnI	CCSGG	1 cut(s)	951
BfaI	CTAG	3 cut(s)	402, 717, 756
BfmI	CTRYAG	1 cut(s)	882
BfrI	CTTAAG	1 cut(s)	542
BisI	GCNGC	7 cut(s)	295, 329, 429, 668, 683, 922, 1117
BlsI	GCNGC	7 cut(s)	296, 330, 430, 669, 684, 923, 1118
Bme1390I	CCNGG	3 cut(s)	317, 951, 1022
Bme18I	GGWCC	1 cut(s)	1095
BmgBI	CACGTC	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	173, 1095
BmiI	GGNNCC	1 cut(s)	804
BmrFI	CCNGG	3 cut(s)	317, 951, 1022
BmsI	GCATC	3 cut(s)	693, 710, 955
BpiI	GAAGAC	1 cut(s)	648
Bpu10I	CCTNAGC	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	951
Bsa29I	ATCGAT	1 cut(s)	27
BsaBI	GATNNNNATC	3 cut(s)	73, 123, 851
BsaXI	ACNNNNNCTCC	4 cut(s)	294, 324, 722, 752
Bsc4I	CCNNNNNNNGG	2 cut(s)	827, 865
Bse1I	ACTGG	2 cut(s)	120, 573
Bse21I	CCTNAGG	1 cut(s)	234
Bse8I	GATNNNNATC	3 cut(s)	73, 123, 851
BseBI	CCWGG	2 cut(s)	317, 1022
BseCI	ATCGAT	1 cut(s)	27
BseGI	GGATG	2 cut(s)	508, 946
BseJI	GATNNNNATC	3 cut(s)	73, 123, 851
BseLI	CCNNNNNNNGG	2 cut(s)	827, 865
BseMII	CTCAG	5 cut(s)	225, 312, 413, 610, 1152
BseNI	ACTGG	2 cut(s)	120, 573
BsePI	GCGCGC	1 cut(s)	917
BseRI	GAGGAG	3 cut(s)	251, 743, 881
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	4 cut(s)	281, 440, 669, 679
Bsh1236I	CGCG	3 cut(s)	919, 921, 1116
BshFI	GGCC	3 cut(s)	175, 328, 363
BshNI	GGYRCC	1 cut(s)	802
BshVI	ATCGAT	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	1039
BsiSI	CCGG	1 cut(s)	951
BslI	CCNNNNNNNGG	2 cut(s)	827, 865
BsmI	GAATGC	2 cut(s)	205, 326
BsnI	GGCC	3 cut(s)	175, 328, 363
Bsp1286I	GDGCHC	3 cut(s)	155, 500, 1039
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	6 cut(s)	24, 124, 190, 524, 874, 974
BspACI	CCGC	4 cut(s)	329, 905, 921, 1116
BspANI	GGCC	3 cut(s)	175, 328, 363
BspCNI	CTCAG	5 cut(s)	226, 311, 414, 609, 1151
BspDI	ATCGAT	1 cut(s)	27
BspFNI	CGCG	3 cut(s)	919, 921, 1116
BspLI	GGNNCC	1 cut(s)	804
BspMAI	CTGCAG	1 cut(s)	886
BspPI	GGATC	2 cut(s)	185, 869
BspQI	GCTCTTC	1 cut(s)	510
BspT107I	GGYRCC	1 cut(s)	802
BspTI	CTTAAG	1 cut(s)	542
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	120, 573
BssHII	GCGCGC	1 cut(s)	917
BssMI	GATC	6 cut(s)	24, 124, 190, 524, 874, 974
Bst2UI	CCWGG	2 cut(s)	317, 1022
Bst4CI	ACNGT	2 cut(s)	98, 473
Bst6I	CTCTTC	1 cut(s)	510
BstAFI	CTTAAG	1 cut(s)	542
BstAPI	GCANNNNNTGC	2 cut(s)	434, 712
BstAUI	TGTACA	1 cut(s)	180
BstC8I	GCNNGC	4 cut(s)	6, 326, 919, 926
BstDEI	CTNAG	5 cut(s)	234, 298, 422, 596, 1138
BstF5I	GGATG	2 cut(s)	508, 946
BstFNI	CGCG	3 cut(s)	919, 921, 1116
BstHHI	GCGC	2 cut(s)	919, 921
BstKTI	GATC	6 cut(s)	27, 127, 193, 527, 877, 977
BstMBI	GATC	6 cut(s)	24, 124, 190, 524, 874, 974
BstMWI	GCNNNNNNNGC	4 cut(s)	321, 434, 712, 925
BstNI	CCWGG	2 cut(s)	317, 1022
BstSCI	CCNGG	3 cut(s)	315, 949, 1020
BstSFI	CTRYAG	1 cut(s)	882
BstSLI	GKGCMC	1 cut(s)	155
BstUI	CGCG	3 cut(s)	919, 921, 1116
BstV1I	GCAGC	4 cut(s)	281, 440, 669, 679
BstV2I	GAAGAC	1 cut(s)	648
Bsu15I	ATCGAT	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	175, 328, 363
BsuTUI	ATCGAT	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	549
BtrI	CACGTC	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	508, 946
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	2 cut(s)	113, 900
Cac8I	GCNNGC	4 cut(s)	6, 326, 919, 926
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	2 cut(s)	919, 921
Cfr13I	GGNCC	2 cut(s)	173, 1095
ClaI	ATCGAT	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	181, 1071
CviAII	CATG	3 cut(s)	19, 766, 1068
CviQI	GTAC	2 cut(s)	181, 1071
DdeI	CTNAG	5 cut(s)	234, 298, 422, 596, 1138
DpnI	GATC	6 cut(s)	26, 126, 192, 526, 876, 976
DpnII	GATC	6 cut(s)	24, 124, 190, 524, 874, 974
DraI	TTTAAA	1 cut(s)	73
DrdI	GACNNNNNNGTC	1 cut(s)	1093
DseDI	GACNNNNNNGTC	1 cut(s)	1093
EaeI	YGGCCR	2 cut(s)	326, 361
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	853
Eco47I	GGWCC	1 cut(s)	1095
Eco57I	CTGAAG	1 cut(s)	555
Eco81I	CCTNAGG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	1095
EcoRII	CCWGG	2 cut(s)	315, 1020
EcoRV	GATATC	1 cut(s)	853
EcoT38I	GRGCYC	1 cut(s)	500
FaeI	CATG	3 cut(s)	22, 769, 1071
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FatI	CATG	3 cut(s)	18, 765, 1067
FauNDI	CATATG	1 cut(s)	783
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	7 cut(s)	295, 329, 429, 668, 683, 922, 1117
FokI	GGATG	2 cut(s)	495, 933
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	7 cut(s)	295, 329, 429, 668, 683, 922, 1117
FspBI	CTAG	3 cut(s)	402, 717, 756
GlaI	GCGC	2 cut(s)	918, 920
GluI	GCNGC	7 cut(s)	295, 329, 429, 668, 683, 922, 1117
HaeIII	GGCC	3 cut(s)	175, 328, 363
HapII	CCGG	1 cut(s)	951
HhaI	GCGC	2 cut(s)	919, 921
Hin1II	CATG	3 cut(s)	22, 769, 1071
Hin6I	GCGC	2 cut(s)	917, 919
HinP1I	GCGC	2 cut(s)	917, 919
HpaII	CCGG	1 cut(s)	951
HphI	GGTGA	2 cut(s)	847, 919
Hpy166II	GTNNAC	2 cut(s)	181, 454
Hpy188I	TCNGA	4 cut(s)	271, 846, 979, 1086
Hpy188III	TCNNGA	5 cut(s)	62, 128, 300, 690, 972
Hpy8I	GTNNAC	2 cut(s)	181, 454
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	2 cut(s)	399, 989
HpyCH4III	ACNGT	2 cut(s)	98, 473
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	8 cut(s)	197, 635, 685, 706, 884, 928, 962, 1102
HpyF10VI	GCNNNNNNNGC	4 cut(s)	321, 434, 712, 925
HpyF3I	CTNAG	5 cut(s)	234, 298, 422, 596, 1138
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	3 cut(s)	22, 769, 1071
HspAI	GCGC	2 cut(s)	917, 919
Kzo9I	GATC	6 cut(s)	24, 124, 190, 524, 874, 974
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	3 cut(s)	302, 664, 1042
Lsp1109I	GCAGC	4 cut(s)	281, 440, 669, 679
LweI	GCATC	3 cut(s)	693, 710, 955
MaeI	CTAG	3 cut(s)	402, 717, 756
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	49, 907
MalI	GATC	6 cut(s)	26, 126, 192, 526, 876, 976
MboI	GATC	6 cut(s)	24, 124, 190, 524, 874, 974
MboII	GAAGA	3 cut(s)	497, 653, 712
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	3 cut(s)	155, 500, 1039
MluCI	AATT	7 cut(s)	90, 101, 133, 339, 1008, 1015, 1079
MmeI	TCCRAC	1 cut(s)	914
MseI	TTAA	6 cut(s)	72, 285, 543, 648, 797, 1153
MslI	CAYNNNNRTG	2 cut(s)	210, 905
MspA1I	CMGCKG	1 cut(s)	670
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	1 cut(s)	951
MspR9I	CCNGG	3 cut(s)	317, 951, 1022
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	2 cut(s)	205, 326
MvaI	CCWGG	2 cut(s)	317, 1022
MvnI	CGCG	3 cut(s)	919, 921, 1116
MwoI	GCNNNNNNNGC	4 cut(s)	321, 434, 712, 925
NciI	CCSGG	1 cut(s)	951
NdeI	CATATG	1 cut(s)	783
NdeII	GATC	6 cut(s)	24, 124, 190, 524, 874, 974
NlaIII	CATG	3 cut(s)	22, 769, 1071
NlaIV	GGNNCC	1 cut(s)	804
NmuCI	GTSAC	2 cut(s)	49, 907
OliI	CACNNNNGTG	1 cut(s)	905
PauI	GCGCGC	1 cut(s)	917
PciSI	GCTCTTC	1 cut(s)	510
PctI	GAATGC	2 cut(s)	205, 326
PfoI	TCCNGGA	1 cut(s)	949
PkrI	GCNGC	7 cut(s)	296, 330, 430, 669, 684, 923, 1118
PpuMI	RGGWCCY	1 cut(s)	1095
PshBI	ATTAAT	1 cut(s)	648
Psp5II	RGGWCCY	1 cut(s)	1095
Psp6I	CCWGG	2 cut(s)	315, 1020
PspGI	CCWGG	2 cut(s)	315, 1020
PspN4I	GGNNCC	1 cut(s)	804
PspPI	GGNCC	2 cut(s)	173, 1095
PspPPI	RGGWCCY	1 cut(s)	1095
PstI	CTGCAG	1 cut(s)	886
PstNI	CAGNNNCTG	1 cut(s)	305
PteI	GCGCGC	1 cut(s)	917
PvuII	CAGCTG	1 cut(s)	670
RsaI	GTAC	2 cut(s)	182, 1072
RsaNI	GTAC	2 cut(s)	181, 1071
RseI	CAYNNNNRTG	2 cut(s)	210, 905
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	6 cut(s)	72, 285, 543, 648, 797, 1153
SatI	GCNGC	7 cut(s)	295, 329, 429, 668, 683, 922, 1117
Sau3AI	GATC	6 cut(s)	24, 124, 190, 524, 874, 974
Sau96I	GGNCC	2 cut(s)	173, 1095
ScrFI	CCNGG	3 cut(s)	317, 951, 1022
SduI	GDGCHC	3 cut(s)	155, 500, 1039
SfaNI	GCATC	3 cut(s)	693, 710, 955
SfcI	CTRYAG	1 cut(s)	882
SinI	GGWCC	1 cut(s)	1095
SmiI	ATTTAAAT	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	210, 905
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	7 cut(s)	90, 101, 133, 339, 1008, 1015, 1079
SsiI	CCGC	4 cut(s)	329, 905, 921, 1116
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	3 cut(s)	402, 717, 756
StyD4I	CCNGG	3 cut(s)	315, 949, 1020
SwaI	ATTTAAAT	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	98, 473
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	2 cut(s)	27, 973
TasI	AATT	7 cut(s)	90, 101, 133, 339, 1008, 1015, 1079
TatI	WGTACW	2 cut(s)	180, 1070
TauI	GCSGC	3 cut(s)	331, 924, 1119
Tru1I	TTAA	6 cut(s)	72, 285, 543, 648, 797, 1153
Tru9I	TTAA	6 cut(s)	72, 285, 543, 648, 797, 1153
TscAI	CASTG	2 cut(s)	120, 907
TseFI	GTSAC	2 cut(s)	49, 907
TseI	GCWGC	4 cut(s)	294, 428, 667, 682
Tsp45I	GTSAC	2 cut(s)	49, 907
TspDTI	ATGAA	5 cut(s)	51, 365, 432, 497, 800
TspRI	CASTG	2 cut(s)	120, 907
Vha464I	CTTAAG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	1095
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	6 cut(s)	90, 101, 133, 1008, 1015, 1079
XmiI	GTMKAC	1 cut(s)	453
XspI	CTAG	3 cut(s)	402, 717, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.