Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005779

Physical Location & Seq

Genomic Coordinates Reverse (-)

30118728 .. 30126191

Gene Structure 7464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGCCTGGACACGAAGTTGCCAACGATGACATGATGATCGATGAGTATGAACAGAAGCAAGTGAATGCTGTTCCTGATGGATTTAACTCTCAGTATCTCAAAATTTACTATGGAAAGCTCTTCCCATATGAGGAAATGTTTAAGTGGATGTCCTATGCAAATGATGGCAAGCATCCTGCATGCAACCAGTCCTACTTTGGCCGGAGAGAGTTTTCTTTCACACTGGATAATGATGTTTATCTGCGGTACAAAACTTTCAACTCCGTGTCTGAGCTTGAAAATTCTATCAAAGAGAAGTGCCCTGTTAAAATAGATATTGGGCCTGTGTACAATGTTGATAGGCATTCCTATGCTCAAAGTGGTTGCTACCCCGAGGAGAGGGAACTGATTTTTGATATAGATATGTCAGATTACGATGATGTTAGATACTGCTGCTCAGGAGCTAATGTGTGCCTGGAGTGCTGGCCGCTTATGACAATTGCTATCAAAGTGATTGACACTGCCCTTCGAGATGACTTTGGTTTCAATCACATTCTGTGGGTATACAGTGGCCGACGTGGTGTTCATTGTTGGGTTTGTGATGGGAAAGCTAGAAGGCTCACAAATGAACTGAGAGCAGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAATGAAAACAGTCATAAAAAGGTTTCTTTGATGGGCCCTGCTCTTCATCCATTCCTTGTGAGATCATATACCGAAGTTCTTAAGGATTTCTTTGAGAGGACATTGCTTTCCAGTCAAAAGATATTTTCTACTGCAGAGAGATATGAAAAGATCTTAGATATGATTCCTGACGAATCTGTCACTTCTGAGCTTCGGGGAAAGTGGCAAGATAATAGACGAACCTCCAATGCAAAAGAAGACATTAATGTTGCTCGTTGGGAGGAGCTGAAACATATGCTGCAATCTGGGAAACAGAAGATGCAAGGACTGCGTAGATGTGTGGAGGAGATTGTGTTCTCTTATACCTACCCTAGACTTGACATGGAGGTTTCAAAACATATGAACCATTTATTAAAGGCACCATTCTGTGTACATCCAAAGACAGGTCGTGTTTGTGTTCCGATTGATCCCAACCGTTGTGAGCAGTTTGATCCTACTGCAGTTCCAACCCTTTCCACTCTTATTGAAGAACTTAATAATGAGGGTTTGAGAGCAGAGGCTGATAACGAACGGGATAGAACGTCACTTGGAAAATCAATAAGATTCTTCCAATCATCATTTTTGGAGCCTTTGGTAAAATCTTGCAAGGAGGAGATGATAAGTTCCAACAATGCGAAACTGCAGCAGTCGAAGTTGCAGCAGTCAAAGAACGTGCATGCTGCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

452

Amino Acids

52.49

Weight (kDa)

6.22

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	131 - 366	3.2e-54	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41880
fragaria_vesca	FvH4_5g04460
malus_domestica	MD06G1105400.v1.1
prunus_persica	Prupe.5G117700_v2.0.a1
pyrus_communis	pycom06g09970
rosa_chinensis	RchiOBHm_Chr7g0195041
rosa_laevigata	RLG00000004150 RLG00000008501 RLG00000015305
rosa_multiflora	Rmu_sc0002246.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260810
rosa_rugosa	Rorug07G0020100 Rorug07G0020200
rosa_samantha	Rh6BG025100 Rh6BG025600 Rh6BG025700 Rh6BG026500 Rh6BG026600 Rh6CG024600 Rh6DG024100 Rh6DG024400 Rh7AG147700 Rh7BG148300 Rh7CG152000
rosa_wichuraiana	Rw2G021680 Rw5G042100 Rw6G002490 Rw7G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	827
AccB1I	GGYRCC	1 cut(s)	1048
AccI	GTMKAC	2 cut(s)	543, 642
AciI	CCGC	2 cut(s)	244, 467
AclWI	GGATC	2 cut(s)	1091, 1115
AcoI	YGGCCR	3 cut(s)	199, 464, 550
AcsI	RAATTY	2 cut(s)	102, 280
AfaI	GTAC	3 cut(s)	248, 329, 1062
AfiI	CCNNNNNNNGG	3 cut(s)	130, 378, 1073
AflII	CTTAAG	1 cut(s)	731
AgsI	TTSAA	5 cut(s)	259, 278, 526, 1023, 1157
AjiI	CACGTC	1 cut(s)	557
AjnI	CCWGG	2 cut(s)	4, 453
AloI	GAACNNNNNNTCC	2 cut(s)	968, 1000
AluBI	AGCT	7 cut(s)	118, 274, 443, 590, 620, 841, 916
AluI	AGCT	7 cut(s)	118, 274, 443, 590, 620, 841, 916
AlwI	GGATC	2 cut(s)	1091, 1115
AlwNI	CAGNNNCTG	1 cut(s)	1190
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	5 cut(s)	199, 320, 464, 550, 685
ApaI	GGGCCC	1 cut(s)	689
ApeKI	GCWGC	6 cut(s)	432, 617, 928, 1312, 1327, 1349
ApoI	RAATTY	2 cut(s)	102, 280
AseI	ATTAAT	1 cut(s)	894
AspS9I	GGNCC	3 cut(s)	320, 685, 686
AvaI	CYCGRG	1 cut(s)	371
BaeGI	GKGCMC	2 cut(s)	302, 689
BanI	GGYRCC	1 cut(s)	1048
BanII	GRGCYC	1 cut(s)	689
BbsI	GAAGAC	1 cut(s)	894
BbvI	GCAGC	6 cut(s)	419, 629, 915, 1324, 1336, 1339
BccI	CCATC	4 cut(s)	71, 158, 575, 676
BciT130I	CCWGG	2 cut(s)	6, 455
BfaI	CTAG	3 cut(s)	591, 1002, 1357
BfmI	CTRYAG	3 cut(s)	783, 1128, 1310
BfrI	CTTAAG	1 cut(s)	731
BglII	AGATCT	1 cut(s)	801
BisI	GCNGC	7 cut(s)	433, 467, 618, 929, 1313, 1328, 1350
BlsI	GCNGC	7 cut(s)	434, 468, 619, 930, 1314, 1329, 1351
Bme1390I	CCNGG	2 cut(s)	6, 455
BmeT110I	CYCGRG	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	557
BmgT120I	GGNCC	3 cut(s)	320, 685, 686
BmiI	GGNNCC	3 cut(s)	687, 1050, 1257
BmrFI	CCNGG	2 cut(s)	6, 455
BmsI	GCATC	2 cut(s)	181, 939
BpiI	GAAGAC	1 cut(s)	894
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	436
Bsa29I	ATCGAT	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	372
BsaXI	ACNNNNNCTCC	4 cut(s)	432, 462, 968, 998
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 378, 1073
Bse1I	ACTGG	3 cut(s)	187, 228, 762
Bse3DI	GCAATG	2 cut(s)	658, 752
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	6, 455
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	4 cut(s)	153, 172, 697, 1063
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	3 cut(s)	130, 378, 1073
BseMI	GCAATG	2 cut(s)	658, 752
BseMII	CTCAG	5 cut(s)	104, 261, 450, 602, 828
BseNI	ACTGG	3 cut(s)	187, 228, 762
BseRI	GAGGAG	4 cut(s)	389, 926, 989, 1295
BseSI	GKGCMC	2 cut(s)	302, 689
BseXI	GCAGC	6 cut(s)	419, 629, 915, 1324, 1336, 1339
BshFI	GGCC	5 cut(s)	201, 322, 466, 552, 687
BshNI	GGYRCC	1 cut(s)	1048
BshVI	ATCGAT	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	130, 378, 1073
BsmI	GAATGC	2 cut(s)	70, 343
BsnI	GGCC	5 cut(s)	201, 322, 466, 552, 687
BsoBI	CYCGRG	1 cut(s)	371
Bsp120I	GGGCCC	1 cut(s)	685
Bsp1286I	GDGCHC	2 cut(s)	302, 689
Bsp1407I	TGTACA	2 cut(s)	327, 1060
Bsp143I	GATC	5 cut(s)	36, 713, 801, 1096, 1120
BspACI	CCGC	2 cut(s)	244, 467
BspANI	GGCC	5 cut(s)	201, 322, 466, 552, 687
BspCNI	CTCAG	5 cut(s)	103, 262, 449, 603, 829
BspDI	ATCGAT	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	687, 1050, 1257
BspMAI	CTGCAG	3 cut(s)	787, 1132, 1314
BspPI	GGATC	2 cut(s)	1091, 1115
BspQI	GCTCTTC	2 cut(s)	125, 699
BspT107I	GGYRCC	1 cut(s)	1048
BspTI	CTTAAG	1 cut(s)	731
BsrDI	GCAATG	2 cut(s)	658, 752
BsrGI	TGTACA	2 cut(s)	327, 1060
BsrI	ACTGG	3 cut(s)	187, 228, 762
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	5 cut(s)	36, 713, 801, 1096, 1120
BssNAI	GTATAC	1 cut(s)	544
Bst1107I	GTATAC	1 cut(s)	544
Bst2UI	CCWGG	2 cut(s)	6, 455
Bst4CI	ACNGT	3 cut(s)	548, 662, 1106
Bst6I	CTCTTC	2 cut(s)	125, 699
BstAFI	CTTAAG	1 cut(s)	731
BstAPI	GCANNNNNTGC	2 cut(s)	623, 958
BstAUI	TGTACA	2 cut(s)	327, 1060
BstC8I	GCNNGC	4 cut(s)	170, 181, 464, 1347
BstDEI	CTNAG	6 cut(s)	90, 270, 436, 611, 805, 837
BstF5I	GGATG	4 cut(s)	153, 172, 697, 1063
BstKTI	GATC	5 cut(s)	39, 716, 804, 1099, 1123
BstMBI	GATC	5 cut(s)	36, 713, 801, 1096, 1120
BstMWI	GCNNNNNNNGC	3 cut(s)	459, 623, 958
BstNI	CCWGG	2 cut(s)	6, 455
BstNSI	RCATGY	2 cut(s)	183, 1349
BstSCI	CCNGG	2 cut(s)	4, 453
BstSFI	CTRYAG	3 cut(s)	783, 1128, 1310
BstSLI	GKGCMC	2 cut(s)	302, 689
BstV1I	GCAGC	6 cut(s)	419, 629, 915, 1324, 1336, 1339
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	801
BstZ17I	GTATAC	1 cut(s)	544
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	5 cut(s)	201, 322, 466, 552, 687
BsuTUI	ATCGAT	1 cut(s)	39
BtrI	CACGTC	1 cut(s)	557
BtsCI	GGATG	4 cut(s)	153, 172, 697, 1063
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	221, 498, 553
Cac8I	GCNNGC	4 cut(s)	170, 181, 464, 1347
CaiI	CAGNNNCTG	1 cut(s)	1190
Cfr13I	GGNCC	3 cut(s)	320, 685, 686
ClaI	ATCGAT	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	247, 328, 1061
CspCI	CAANNNNNGTGG	2 cut(s)	1135, 1170
CviAII	CATG	4 cut(s)	31, 180, 1012, 1346
CviQI	GTAC	3 cut(s)	247, 328, 1061
DdeI	CTNAG	6 cut(s)	90, 270, 436, 611, 805, 837
DpnI	GATC	5 cut(s)	38, 715, 803, 1098, 1122
DpnII	GATC	5 cut(s)	36, 713, 801, 1096, 1120
DrdI	GACNNNNNNGTC	1 cut(s)	827
DseDI	GACNNNNNNGTC	1 cut(s)	827
EaeI	YGGCCR	3 cut(s)	199, 464, 550
Eam1104I	CTCTTC	2 cut(s)	125, 699
EarI	CTCTTC	2 cut(s)	125, 699
Eco24I	GRGCYC	1 cut(s)	689
Eco88I	CYCGRG	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRII	CCWGG	2 cut(s)	4, 453
EcoT38I	GRGCYC	1 cut(s)	689
FaeI	CATG	4 cut(s)	34, 183, 1015, 1349
FalI	AAGNNNNNCTT	2 cut(s)	725, 757
FatI	CATG	4 cut(s)	30, 179, 1011, 1345
FauNDI	CATATG	3 cut(s)	127, 924, 1029
FblI	GTMKAC	2 cut(s)	543, 642
Fnu4HI	GCNGC	7 cut(s)	433, 467, 618, 929, 1313, 1328, 1350
FokI	GGATG	4 cut(s)	159, 160, 684, 1050
FriOI	GRGCYC	1 cut(s)	689
Fsp4HI	GCNGC	7 cut(s)	433, 467, 618, 929, 1313, 1328, 1350
FspBI	CTAG	3 cut(s)	591, 1002, 1357
GluI	GCNGC	7 cut(s)	433, 467, 618, 929, 1313, 1328, 1350
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	5 cut(s)	201, 322, 466, 552, 687
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	4 cut(s)	34, 183, 1015, 1349
HinfI	GANTC	3 cut(s)	814, 824, 1233
HpaII	CCGG	1 cut(s)	202
Hpy166II	GTNNAC	4 cut(s)	328, 544, 643, 1061
Hpy188I	TCNGA	4 cut(s)	271, 409, 838, 1092
Hpy188III	TCNNGA	4 cut(s)	74, 438, 509, 818
Hpy8I	GTNNAC	4 cut(s)	328, 544, 643, 1061
Hpy99I	CGWCG	1 cut(s)	558
HpyAV	CCTTC	2 cut(s)	515, 588
HpyCH4III	ACNGT	3 cut(s)	548, 662, 1106
HpyCH4IV	ACGT	3 cut(s)	556, 1211, 1341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	459, 623, 958
HpyF3I	CTNAG	6 cut(s)	90, 270, 436, 611, 805, 837
HpySE526I	ACGT	3 cut(s)	556, 1211, 1341
Hsp92II	CATG	4 cut(s)	34, 183, 1015, 1349
Kzo9I	GATC	5 cut(s)	36, 713, 801, 1096, 1120
LguI	GCTCTTC	2 cut(s)	125, 699
LmnI	GCTCC	3 cut(s)	440, 913, 1255
Lsp1109I	GCAGC	6 cut(s)	419, 629, 915, 1324, 1336, 1339
LweI	GCATC	2 cut(s)	181, 939
MaeI	CTAG	3 cut(s)	591, 1002, 1357
MaeII	ACGT	3 cut(s)	556, 1211, 1341
MaeIII	GTNAC	2 cut(s)	829, 1212
MalI	GATC	5 cut(s)	38, 715, 803, 1098, 1122
MboI	GATC	5 cut(s)	36, 713, 801, 1096, 1120
MboII	GAAGA	6 cut(s)	112, 686, 899, 958, 1169, 1228
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	801
MhlI	GDGCHC	2 cut(s)	302, 689
MluCI	AATT	3 cut(s)	102, 280, 477
MmeI	TCCRAC	2 cut(s)	1160, 1320
MseI	TTAA	7 cut(s)	84, 141, 306, 732, 894, 1043, 1164
MslI	CAYNNNNRTG	1 cut(s)	348
MspCI	CTTAAG	1 cut(s)	731
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	6, 455
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	2 cut(s)	70, 343
MvaI	CCWGG	2 cut(s)	6, 455
MwoI	GCNNNNNNNGC	3 cut(s)	459, 623, 958
NdeI	CATATG	3 cut(s)	127, 924, 1029
NdeII	GATC	5 cut(s)	36, 713, 801, 1096, 1120
NlaIII	CATG	4 cut(s)	34, 183, 1015, 1349
NlaIV	GGNNCC	3 cut(s)	687, 1050, 1257
NmuCI	GTSAC	2 cut(s)	829, 1212
NspI	RCATGY	2 cut(s)	183, 1349
PaeI	GCATGC	2 cut(s)	183, 1349
PciSI	GCTCTTC	2 cut(s)	125, 699
PctI	GAATGC	2 cut(s)	70, 343
PfeI	GAWTC	3 cut(s)	814, 824, 1233
PkrI	GCNGC	7 cut(s)	434, 468, 619, 930, 1314, 1329, 1351
PshBI	ATTAAT	1 cut(s)	894
Psp6I	CCWGG	2 cut(s)	4, 453
PspGI	CCWGG	2 cut(s)	4, 453
PspN4I	GGNNCC	3 cut(s)	687, 1050, 1257
PspOMI	GGGCCC	1 cut(s)	685
PspPI	GGNCC	3 cut(s)	320, 685, 686
PstI	CTGCAG	3 cut(s)	787, 1132, 1314
PstNI	CAGNNNCTG	1 cut(s)	1190
PsuI	RGATCY	1 cut(s)	801
RsaI	GTAC	3 cut(s)	248, 329, 1062
RsaNI	GTAC	3 cut(s)	247, 328, 1061
RseI	CAYNNNNRTG	1 cut(s)	348
SapI	GCTCTTC	2 cut(s)	125, 699
SaqAI	TTAA	7 cut(s)	84, 141, 306, 732, 894, 1043, 1164
SatI	GCNGC	7 cut(s)	433, 467, 618, 929, 1313, 1328, 1350
Sau3AI	GATC	5 cut(s)	36, 713, 801, 1096, 1120
Sau96I	GGNCC	3 cut(s)	320, 685, 686
ScrFI	CCNGG	2 cut(s)	6, 455
SduI	GDGCHC	2 cut(s)	302, 689
SfaNI	GCATC	2 cut(s)	181, 939
SfcI	CTRYAG	3 cut(s)	783, 1128, 1310
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SphI	GCATGC	2 cut(s)	183, 1349
Sse9I	AATT	3 cut(s)	102, 280, 477
SsiI	CCGC	2 cut(s)	244, 467
SspMI	CTAG	3 cut(s)	591, 1002, 1357
StyD4I	CCNGG	2 cut(s)	4, 453
TaaI	ACNGT	3 cut(s)	548, 662, 1106
TaiI	ACGT	3 cut(s)	559, 1214, 1344
TaqI	TCGA	3 cut(s)	39, 508, 1319
TasI	AATT	3 cut(s)	102, 280, 477
TatI	WGTACW	2 cut(s)	327, 1060
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	3 cut(s)	814, 824, 1233
Tru1I	TTAA	7 cut(s)	84, 141, 306, 732, 894, 1043, 1164
Tru9I	TTAA	7 cut(s)	84, 141, 306, 732, 894, 1043, 1164
TscAI	CASTG	3 cut(s)	228, 505, 553
TseFI	GTSAC	2 cut(s)	829, 1212
TseI	GCWGC	6 cut(s)	432, 617, 928, 1312, 1327, 1349
Tsp45I	GTSAC	2 cut(s)	829, 1212
TspDTI	ATGAA	7 cut(s)	63, 554, 621, 669, 686, 810, 1046
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	3 cut(s)	228, 505, 553
Vha464I	CTTAAG	1 cut(s)	731
VspI	ATTAAT	1 cut(s)	894
XapI	RAATTY	2 cut(s)	102, 280
XceI	RCATGY	2 cut(s)	183, 1349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmiI	GTMKAC	2 cut(s)	543, 642
XspI	CTAG	3 cut(s)	591, 1002, 1357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.