Protein ROOT INITIATION DEFECTIVE 3-like
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g07940 |
| malus_domestica | MD06G1143900.v1.1 MD14G1159200.v1.1 |
| prunus_persica | Prupe.5G153000_v2.0.a1 Prupe.5G153000_v2.0.a1 |
| pyrus_communis | pycom06g13350 pycom14g13270 |
| rosa_chinensis | RchiOBHm_Chr7g0190461 |
| rosa_laevigata | RLG00000004530 |
| rosa_multiflora | Rmu_sc0002614.1_g000001 Rmu_sc0018407.1_g000001 Rmu_sc0036935.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00264600 |
| rosa_rugosa | Rorug06G0504700 |
| rosa_samantha | Rh7AG110800 Rh7BG113400 Rh7CG115600 Rh7DG113900 |
| rosa_wichuraiana | Rw7G009620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 296 |
| Acc36I | ACCTGC | 2 cut(s) | 296, 848 |
| AccB1I | GGYRCC | 1 cut(s) | 311 |
| AccBSI | CCGCTC | 1 cut(s) | 1296 |
| AccI | GTMKAC | 1 cut(s) | 1316 |
| AciI | CCGC | 2 cut(s) | 1296, 1306 |
| AclI | AACGTT | 1 cut(s) | 327 |
| AclWI | GGATC | 1 cut(s) | 96 |
| AcsI | RAATTY | 3 cut(s) | 738, 775, 1163 |
| AcuI | CTGAAG | 3 cut(s) | 423, 813, 832 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 259, 340, 1219, 1384, 1385 |
| AflIII | ACRYGT | 2 cut(s) | 1240, 1271 |
| AgsI | TTSAA | 4 cut(s) | 223, 394, 528, 758 |
| AjiI | CACGTC | 1 cut(s) | 1314 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 100, 132 |
| AluBI | AGCT | 8 cut(s) | 164, 249, 504, 576, 600, 646, 709, 830 |
| AluI | AGCT | 8 cut(s) | 164, 249, 504, 576, 600, 646, 709, 830 |
| Alw21I | GWGCWC | 1 cut(s) | 1212 |
| Alw26I | GTCTC | 1 cut(s) | 1346 |
| AlwI | GGATC | 1 cut(s) | 96 |
| AoxI | GGCC | 5 cut(s) | 201, 215, 261, 269, 553 |
| ApeKI | GCWGC | 7 cut(s) | 36, 235, 573, 706, 785, 788, 1175 |
| ApoI | RAATTY | 3 cut(s) | 738, 775, 1163 |
| AspS9I | GGNCC | 5 cut(s) | 201, 216, 269, 978, 1308 |
| AsuHPI | GGTGA | 3 cut(s) | 686, 898, 1323 |
| AsuNHI | GCTAGC | 1 cut(s) | 670 |
| AvaII | GGWCC | 2 cut(s) | 978, 1308 |
| BaeGI | GKGCMC | 1 cut(s) | 316 |
| BanI | GGYRCC | 1 cut(s) | 311 |
| BbsI | GAAGAC | 1 cut(s) | 86 |
| Bbv12I | GWGCWC | 1 cut(s) | 1212 |
| BbvCI | CCTCAGC | 1 cut(s) | 231 |
| BbvI | GCAGC | 7 cut(s) | 48, 247, 585, 718, 772, 775, 1187 |
| BccI | CCATC | 7 cut(s) | 284, 440, 602, 725, 896, 1011, 1240 |
| BceAI | ACGGC | 1 cut(s) | 433 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 224, 258 |
| BciVI | GTATCC | 1 cut(s) | 1059 |
| BcoDI | GTCTC | 1 cut(s) | 1346 |
| BfaI | CTAG | 3 cut(s) | 257, 671, 1205 |
| BfmI | CTRYAG | 2 cut(s) | 681, 1173 |
| BfuAI | ACCTGC | 2 cut(s) | 296, 848 |
| BfuI | GTATCC | 1 cut(s) | 1059 |
| BglII | AGATCT | 1 cut(s) | 386 |
| BisI | GCNGC | 7 cut(s) | 37, 236, 574, 707, 786, 789, 1176 |
| BlsI | GCNGC | 7 cut(s) | 38, 237, 575, 708, 787, 790, 1177 |
| Bme18I | GGWCC | 2 cut(s) | 978, 1308 |
| BmgBI | CACGTC | 1 cut(s) | 1314 |
| BmgT120I | GGNCC | 5 cut(s) | 201, 216, 269, 978, 1308 |
| BmiI | GGNNCC | 2 cut(s) | 202, 313 |
| BmsI | GCATC | 3 cut(s) | 881, 903, 1278 |
| BmtI | GCTAGC | 1 cut(s) | 674 |
| BpiI | GAAGAC | 1 cut(s) | 86 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1339, 1371 |
| Bpu10I | CCTNAGC | 1 cut(s) | 231 |
| BpuEI | CTTGAG | 1 cut(s) | 642 |
| BsaJI | CCNNGG | 2 cut(s) | 974, 1071 |
| BsaWI | WCCGGW | 1 cut(s) | 1212 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 259, 340, 1219, 1384, 1385 |
| Bse1I | ACTGG | 3 cut(s) | 151, 556, 771 |
| Bse3DI | GCAATG | 2 cut(s) | 983, 1185 |
| BseDI | CCNNGG | 2 cut(s) | 974, 1071 |
| BseGI | GGATG | 5 cut(s) | 295, 456, 921, 1067, 1221 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 259, 340, 1219, 1384, 1385 |
| BseMI | GCAATG | 2 cut(s) | 983, 1185 |
| BseMII | CTCAG | 4 cut(s) | 134, 182, 245, 867 |
| BseNI | ACTGG | 3 cut(s) | 151, 556, 771 |
| BseRI | GAGGAG | 2 cut(s) | 114, 210 |
| BseSI | GKGCMC | 1 cut(s) | 316 |
| BseXI | GCAGC | 7 cut(s) | 48, 247, 585, 718, 772, 775, 1187 |
| BsgI | GTGCAG | 2 cut(s) | 55, 868 |
| BshFI | GGCC | 5 cut(s) | 203, 217, 263, 271, 555 |
| BshNI | GGYRCC | 1 cut(s) | 311 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1212 |
| BsiSI | CCGG | 1 cut(s) | 1213 |
| BslFI | GGGAC | 1 cut(s) | 1359 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 259, 340, 1219, 1384, 1385 |
| BsmAI | GTCTC | 1 cut(s) | 1346 |
| BsmFI | GGGAC | 1 cut(s) | 1359 |
| BsnI | GGCC | 5 cut(s) | 203, 217, 263, 271, 555 |
| Bsp1286I | GDGCHC | 2 cut(s) | 316, 1212 |
| Bsp143I | GATC | 3 cut(s) | 88, 386, 796 |
| BspACI | CCGC | 2 cut(s) | 1296, 1306 |
| BspANI | GGCC | 5 cut(s) | 203, 217, 263, 271, 555 |
| BspCNI | CTCAG | 4 cut(s) | 135, 181, 244, 868 |
| BspLI | GGNNCC | 2 cut(s) | 202, 313 |
| BspMAI | CTGCAG | 2 cut(s) | 685, 1177 |
| BspMI | ACCTGC | 2 cut(s) | 296, 848 |
| BspOI | GCTAGC | 1 cut(s) | 674 |
| BspPI | GGATC | 1 cut(s) | 96 |
| BspT107I | GGYRCC | 1 cut(s) | 311 |
| BsrBI | CCGCTC | 1 cut(s) | 1296 |
| BsrDI | GCAATG | 2 cut(s) | 983, 1185 |
| BsrI | ACTGG | 3 cut(s) | 151, 556, 771 |
| BssECI | CCNNGG | 2 cut(s) | 974, 1071 |
| BssMI | GATC | 3 cut(s) | 88, 386, 796 |
| BssT1I | CCWWGG | 1 cut(s) | 1071 |
| Bst4CI | ACNGT | 2 cut(s) | 398, 978 |
| Bst6I | CTCTTC | 2 cut(s) | 429, 1092 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 311, 680, 891 |
| BstC8I | GCNNGC | 1 cut(s) | 672 |
| BstDEI | CTNAG | 4 cut(s) | 143, 168, 231, 876 |
| BstDSI | CCRYGG | 1 cut(s) | 974 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 338 |
| BstF5I | GGATG | 5 cut(s) | 295, 456, 921, 1067, 1221 |
| BstKTI | GATC | 3 cut(s) | 91, 389, 799 |
| BstMAI | GTCTC | 1 cut(s) | 1346 |
| BstMBI | GATC | 3 cut(s) | 88, 386, 796 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 45, 235, 311, 680, 836, 891 |
| BstNSI | RCATGY | 2 cut(s) | 1244, 1363 |
| BstSFI | CTRYAG | 2 cut(s) | 681, 1173 |
| BstSLI | GKGCMC | 1 cut(s) | 316 |
| BstV1I | GCAGC | 7 cut(s) | 48, 247, 585, 718, 772, 775, 1187 |
| BstV2I | GAAGAC | 1 cut(s) | 86 |
| BstX2I | RGATCY | 1 cut(s) | 386 |
| BstYI | RGATCY | 1 cut(s) | 386 |
| BsuI | GTATCC | 1 cut(s) | 1059 |
| BsuRI | GGCC | 5 cut(s) | 203, 217, 263, 271, 555 |
| BtgI | CCRYGG | 1 cut(s) | 974 |
| BtrI | CACGTC | 1 cut(s) | 1314 |
| BtsCI | GGATG | 5 cut(s) | 295, 456, 921, 1067, 1221 |
| BtsI | GCAGTG | 3 cut(s) | 30, 834, 972 |
| BtsIMutI | CAGTG | 3 cut(s) | 30, 834, 972 |
| BveI | ACCTGC | 2 cut(s) | 296, 848 |
| Cac8I | GCNNGC | 1 cut(s) | 672 |
| Cfr13I | GGNCC | 5 cut(s) | 201, 216, 269, 978, 1308 |
| CviAII | CATG | 8 cut(s) | 49, 128, 182, 487, 615, 1098, 1241, 1360 |
| DdeI | CTNAG | 4 cut(s) | 143, 168, 231, 876 |
| DpnI | GATC | 3 cut(s) | 90, 388, 798 |
| DpnII | GATC | 3 cut(s) | 88, 386, 796 |
| Eam1104I | CTCTTC | 2 cut(s) | 429, 1092 |
| EarI | CTCTTC | 2 cut(s) | 429, 1092 |
| Eco130I | CCWWGG | 1 cut(s) | 1071 |
| Eco32I | GATATC | 1 cut(s) | 904 |
| Eco47I | GGWCC | 2 cut(s) | 978, 1308 |
| Eco57I | CTGAAG | 3 cut(s) | 423, 813, 832 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 338 |
| EcoRI | GAATTC | 1 cut(s) | 1163 |
| EcoRV | GATATC | 1 cut(s) | 904 |
| EcoT14I | CCWWGG | 1 cut(s) | 1071 |
| EcoT22I | ATGCAT | 1 cut(s) | 1024 |
| ErhI | CCWWGG | 1 cut(s) | 1071 |
| FaeI | CATG | 8 cut(s) | 52, 131, 185, 490, 618, 1101, 1244, 1363 |
| FaqI | GGGAC | 1 cut(s) | 1359 |
| FatI | CATG | 8 cut(s) | 48, 127, 181, 486, 614, 1097, 1240, 1359 |
| FblI | GTMKAC | 1 cut(s) | 1316 |
| Fnu4HI | GCNGC | 7 cut(s) | 37, 236, 574, 707, 786, 789, 1176 |
| FokI | GGATG | 5 cut(s) | 302, 463, 908, 1054, 1228 |
| Fsp4HI | GCNGC | 7 cut(s) | 37, 236, 574, 707, 786, 789, 1176 |
| FspBI | CTAG | 3 cut(s) | 257, 671, 1205 |
| GluI | GCNGC | 7 cut(s) | 37, 236, 574, 707, 786, 789, 1176 |
| HaeIII | GGCC | 5 cut(s) | 203, 217, 263, 271, 555 |
| HapII | CCGG | 1 cut(s) | 1213 |
| Hin1II | CATG | 8 cut(s) | 52, 131, 185, 490, 618, 1101, 1244, 1363 |
| HincII | GTYRAC | 1 cut(s) | 561 |
| HindII | GTYRAC | 1 cut(s) | 561 |
| HindIII | AAGCTT | 2 cut(s) | 502, 644 |
| HinfI | GANTC | 7 cut(s) | 172, 494, 930, 970, 1328, 1354, 1372 |
| HpaI | GTTAAC | 1 cut(s) | 561 |
| HpaII | CCGG | 1 cut(s) | 1213 |
| HphI | GGTGA | 3 cut(s) | 686, 898, 1323 |
| Hpy166II | GTNNAC | 6 cut(s) | 331, 377, 561, 748, 1311, 1317 |
| Hpy188I | TCNGA | 9 cut(s) | 171, 246, 412, 442, 764, 877, 926, 1008, 1135 |
| Hpy188III | TCNNGA | 2 cut(s) | 321, 720 |
| Hpy8I | GTNNAC | 6 cut(s) | 331, 377, 561, 748, 1311, 1317 |
| HpyAV | CCTTC | 1 cut(s) | 856 |
| HpyCH4III | ACNGT | 2 cut(s) | 398, 978 |
| HpyCH4IV | ACGT | 3 cut(s) | 327, 1273, 1313 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 45, 235, 311, 680, 836, 891 |
| HpyF3I | CTNAG | 4 cut(s) | 143, 168, 231, 876 |
| HpySE526I | ACGT | 3 cut(s) | 327, 1273, 1313 |
| Hsp92II | CATG | 8 cut(s) | 52, 131, 185, 490, 618, 1101, 1244, 1363 |
| KspAI | GTTAAC | 1 cut(s) | 561 |
| Kzo9I | GATC | 3 cut(s) | 88, 386, 796 |
| LmnI | GCTCC | 5 cut(s) | 127, 246, 532, 827, 1393 |
| Lsp1109I | GCAGC | 7 cut(s) | 48, 247, 585, 718, 772, 775, 1187 |
| LweI | GCATC | 3 cut(s) | 881, 903, 1278 |
| MaeI | CTAG | 3 cut(s) | 257, 671, 1205 |
| MaeII | ACGT | 3 cut(s) | 327, 1273, 1313 |
| MaeIII | GTNAC | 3 cut(s) | 832, 952, 1148 |
| MalI | GATC | 3 cut(s) | 90, 388, 798 |
| MbiI | CCGCTC | 1 cut(s) | 1296 |
| MboI | GATC | 3 cut(s) | 88, 386, 796 |
| MfeI | CAATTG | 1 cut(s) | 910 |
| MflI | RGATCY | 1 cut(s) | 386 |
| MhlI | GDGCHC | 2 cut(s) | 316, 1212 |
| MluCI | AATT | 5 cut(s) | 356, 738, 775, 910, 1163 |
| MlyI | GAGTC | 2 cut(s) | 1348, 1381 |
| MmeI | TCCRAC | 3 cut(s) | 172, 1173, 1361 |
| Mph1103I | ATGCAT | 1 cut(s) | 1024 |
| MseI | TTAA | 3 cut(s) | 560, 590, 842 |
| MslI | CAYNNNNRTG | 2 cut(s) | 180, 209 |
| MspI | CCGG | 1 cut(s) | 1213 |
| MunI | CAATTG | 1 cut(s) | 910 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 45, 235, 311, 680, 836, 891 |
| NdeII | GATC | 3 cut(s) | 88, 386, 796 |
| NheI | GCTAGC | 1 cut(s) | 670 |
| NlaIII | CATG | 8 cut(s) | 52, 131, 185, 490, 618, 1101, 1244, 1363 |
| NlaIV | GGNNCC | 2 cut(s) | 202, 313 |
| NmuCI | GTSAC | 2 cut(s) | 832, 1148 |
| NsiI | ATGCAT | 1 cut(s) | 1024 |
| NspI | RCATGY | 2 cut(s) | 1244, 1363 |
| PaqCI | CACCTGC | 1 cut(s) | 296 |
| PciI | ACATGT | 1 cut(s) | 1240 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 768 |
| PfeI | GAWTC | 5 cut(s) | 172, 494, 930, 970, 1328 |
| PkrI | GCNGC | 7 cut(s) | 38, 237, 575, 708, 787, 790, 1177 |
| PleI | GAGTC | 2 cut(s) | 1348, 1380 |
| PpsI | GAGTC | 2 cut(s) | 1348, 1380 |
| PscI | ACATGT | 1 cut(s) | 1240 |
| Psp1406I | AACGTT | 1 cut(s) | 327 |
| PspN4I | GGNNCC | 2 cut(s) | 202, 313 |
| PspPI | GGNCC | 5 cut(s) | 201, 216, 269, 978, 1308 |
| PstI | CTGCAG | 2 cut(s) | 685, 1177 |
| PsuI | RGATCY | 1 cut(s) | 386 |
| RseI | CAYNNNNRTG | 2 cut(s) | 180, 209 |
| SaqAI | TTAA | 3 cut(s) | 560, 590, 842 |
| SatI | GCNGC | 7 cut(s) | 37, 236, 574, 707, 786, 789, 1176 |
| Sau3AI | GATC | 3 cut(s) | 88, 386, 796 |
| Sau96I | GGNCC | 5 cut(s) | 201, 216, 269, 978, 1308 |
| SchI | GAGTC | 2 cut(s) | 1348, 1381 |
| SduI | GDGCHC | 2 cut(s) | 316, 1212 |
| SfaNI | GCATC | 3 cut(s) | 881, 903, 1278 |
| SfcI | CTRYAG | 2 cut(s) | 681, 1173 |
| SinI | GGWCC | 2 cut(s) | 978, 1308 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 180, 209 |
| SmlI | CTYRAG | 1 cut(s) | 657 |
| SmoI | CTYRAG | 1 cut(s) | 657 |
| Sse9I | AATT | 5 cut(s) | 356, 738, 775, 910, 1163 |
| SsiI | CCGC | 2 cut(s) | 1296, 1306 |
| SspMI | CTAG | 3 cut(s) | 257, 671, 1205 |
| StyI | CCWWGG | 1 cut(s) | 1071 |
| TaaI | ACNGT | 2 cut(s) | 398, 978 |
| TaiI | ACGT | 3 cut(s) | 330, 1276, 1316 |
| TaqI | TCGA | 3 cut(s) | 771, 933, 1041 |
| TasI | AATT | 5 cut(s) | 356, 738, 775, 910, 1163 |
| TfiI | GAWTC | 5 cut(s) | 172, 494, 930, 970, 1328 |
| Tru1I | TTAA | 3 cut(s) | 560, 590, 842 |
| Tru9I | TTAA | 3 cut(s) | 560, 590, 842 |
| TscAI | CASTG | 3 cut(s) | 30, 841, 972 |
| TseFI | GTSAC | 2 cut(s) | 832, 1148 |
| TseI | GCWGC | 7 cut(s) | 36, 235, 573, 706, 785, 788, 1175 |
| Tsp45I | GTSAC | 2 cut(s) | 832, 1148 |
| TspDTI | ATGAA | 3 cut(s) | 1083, 1202, 1268 |
| TspRI | CASTG | 3 cut(s) | 30, 841, 972 |
| VpaK11BI | GGWCC | 2 cut(s) | 978, 1308 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 338 |
| XapI | RAATTY | 3 cut(s) | 738, 775, 1163 |
| XceI | RCATGY | 2 cut(s) | 1244, 1363 |
| XmiI | GTMKAC | 1 cut(s) | 1316 |
| XspI | CTAG | 3 cut(s) | 257, 671, 1205 |
| Zsp2I | ATGCAT | 1 cut(s) | 1024 |