Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018407.1

Orthogroup ID

OG0012617

Physical Location & Seq

Genomic Coordinates Forward (+)

16755 .. 17090

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018407.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgggcggtaatggaggcgaggcagtggttgtgtgcagtgacaagagcatgggaacagggataacagtatgggacatagacacaggggatcgtctccttcacataccctcctgtgcttctcctcctcgtgcacttctgtgcctgaggaaccagttcattgttgcttctcagattcacaggcctggctctgttggcggtggggccatctccatgtgggccttaaacaaggttactaccaaccggatctttcttttcttccggctatatgaatccatttcgataattcttctagctagtcaccttgataggcgtagttgggtagcgcgacagtggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0007368 GO:0007389 GO:0008150 GO:0009799 GO:0009855 GO:0032501 GO:0032502 GO:0048856 GO:0070121

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

111

Amino Acids

12.18

Weight (kDa)

9.49

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07940
malus_domestica	MD06G1143900.v1.1 MD14G1159200.v1.1
prunus_persica	Prupe.5G153000_v2.0.a1 Prupe.5G153000_v2.0.a1
pyrus_communis	pycom06g13350 pycom14g13270
rosa_chinensis	RchiOBHm_Chr7g0190461
rosa_laevigata	RLG00000004530
rosa_multiflora	Rmu_sc0002614.1_g000001 Rmu_sc0018407.1_g000001 Rmu_sc0036935.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264600
rosa_rugosa	Rorug06G0504700
rosa_samantha	Rh7AG110800 Rh7BG113400 Rh7CG115600 Rh7DG113900
rosa_wichuraiana	Rw7G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	325
AciI	CCGC	2 cut(s)	6, 195
AclWI	GGATC	2 cut(s)	96, 251
AjnI	CCWGG	1 cut(s)	181
AleI	CACNNNNGTG	1 cut(s)	136
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	98
Alw44I	GTGCAC	1 cut(s)	129
AlwI	GGATC	2 cut(s)	96, 251
AoxI	GGCC	3 cut(s)	179, 201, 216
ApaLI	GTGCAC	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	2 cut(s)	201, 216
AsuHPI	GGTGA	1 cut(s)	290
AxyI	CCTNAGG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	133
BccI	CCATC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	290, 294
Bme1390I	CCNGG	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	201, 216
BmiI	GGNNCC	2 cut(s)	149, 202
BmrFI	CCNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bse1I	ACTGG	1 cut(s)	151
Bse21I	CCTNAGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	134, 182
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	2 cut(s)	111, 114
BseSI	GKGCMC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	3 cut(s)	181, 203, 218
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	241, 259
BslFI	GGGAC	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	3 cut(s)	181, 203, 218
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	88, 243
BspACI	CCGC	2 cut(s)	6, 195
BspANI	GGCC	3 cut(s)	181, 203, 218
BspCNI	CTCAG	2 cut(s)	135, 181
BspFNI	CGCG	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	149, 202
BspPI	GGATC	2 cut(s)	96, 251
BsrI	ACTGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	88, 243
BssSI	CACGAG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	67, 330
BstDEI	CTNAG	2 cut(s)	143, 168
BstFNI	CGCG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	2 cut(s)	91, 246
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	88, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	133
BstUI	CGCG	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	181, 203, 218
BtsI	GCAGTG	2 cut(s)	30, 43
BtsIMutI	CAGTG	3 cut(s)	30, 43, 335
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	201, 216
CviAII	CATG	2 cut(s)	49, 211
CviJI	RGCY	6 cut(s)	181, 186, 203, 218, 262, 293
CviKI_1	RGCY	6 cut(s)	181, 186, 203, 218, 262, 293
DdeI	CTNAG	2 cut(s)	143, 168
DpnI	GATC	2 cut(s)	90, 245
DpnII	GATC	2 cut(s)	88, 243
Eco147I	AGGCCT	1 cut(s)	181
Eco81I	CCTNAGG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	2 cut(s)	52, 214
FaiI	YATR	7 cut(s)	50, 70, 77, 104, 212, 265, 267
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	2 cut(s)	48, 210
FspBI	CTAG	2 cut(s)	290, 294
GlaI	GCGC	1 cut(s)	324
HaeIII	GGCC	3 cut(s)	181, 203, 218
HapII	CCGG	2 cut(s)	241, 259
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	2 cut(s)	52, 214
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	2 cut(s)	172, 269
HpaII	CCGG	2 cut(s)	241, 259
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	171
Hpy8I	GTNNAC	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	67, 330
HpyCH4V	TGCA	2 cut(s)	36, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
HpyF3I	CTNAG	2 cut(s)	143, 168
Hsp92II	CATG	2 cut(s)	52, 214
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	2 cut(s)	88, 243
MaeI	CTAG	2 cut(s)	290, 294
MaeIII	GTNAC	3 cut(s)	38, 229, 296
MalI	GATC	2 cut(s)	90, 245
MboI	GATC	2 cut(s)	88, 243
MboII	GAAGA	2 cut(s)	247, 278
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	1 cut(s)	282
MnlI	CCTC	6 cut(s)	8, 13, 118, 132, 135, 138
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	221
MslI	CAYNNNNRTG	2 cut(s)	136, 209
MspI	CCGG	2 cut(s)	241, 259
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	192
NdeII	GATC	2 cut(s)	88, 243
NlaIII	CATG	2 cut(s)	52, 214
NlaIV	GGNNCC	2 cut(s)	149, 202
NmuCI	GTSAC	2 cut(s)	38, 296
OliI	CACNNNNGTG	1 cut(s)	136
PceI	AGGCCT	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	172, 269
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	149, 202
PspPI	GGNCC	2 cut(s)	201, 216
PsuI	RGATCY	1 cut(s)	243
RseI	CAYNNNNRTG	2 cut(s)	136, 209
SaqAI	TTAA	1 cut(s)	221
Sau3AI	GATC	2 cut(s)	88, 243
Sau96I	GGNCC	2 cut(s)	201, 216
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	3 cut(s)	231, 295, 303
SmiMI	CAYNNNNRTG	2 cut(s)	136, 209
Sse9I	AATT	1 cut(s)	282
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	2 cut(s)	6, 195
SspMI	CTAG	2 cut(s)	290, 294
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	67, 330
TaqI	TCGA	1 cut(s)	278
TasI	AATT	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	172, 269
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	3 cut(s)	30, 43, 335
TseFI	GTSAC	2 cut(s)	38, 296
Tsp45I	GTSAC	2 cut(s)	38, 296
TspDTI	ATGAA	2 cut(s)	145, 282
TspRI	CASTG	3 cut(s)	30, 43, 335
VneI	GTGCAC	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	2 cut(s)	290, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.