Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036935.1

Orthogroup ID

OG0012617

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 302

Gene Structure 302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036935.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

aaagaatacactcctgcgtcaatggaaatgaaattggaacaaagtttagaggagcggacgtgggcaacaagaatggcaaaccatgtcatggacatgaataggcacctgcagtcgcggttgttagatttgatgcagagcagctttttattgtccgggtctactgaaatggattcaccttcaacaaaaaagagaaagaccctcatgctcgaaagtcctccattacaggaggaggagaagcaaccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0007368 GO:0007389 GO:0008150 GO:0009799 GO:0009855 GO:0032501 GO:0032502 GO:0048856 GO:0070121

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

81

Amino Acids

9.47

Weight (kDa)

5.66

Isoelectric Point (pI)

87.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07940
malus_domestica	MD06G1143900.v1.1 MD14G1159200.v1.1
prunus_persica	Prupe.5G153000_v2.0.a1 Prupe.5G153000_v2.0.a1
pyrus_communis	pycom06g13350 pycom14g13270
rosa_chinensis	RchiOBHm_Chr7g0190461
rosa_laevigata	RLG00000004530
rosa_multiflora	Rmu_sc0002614.1_g000001 Rmu_sc0018407.1_g000001 Rmu_sc0036935.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264600
rosa_rugosa	Rorug06G0504700
rosa_samantha	Rh7AG110800 Rh7BG113400 Rh7CG115600 Rh7DG113900
rosa_wichuraiana	Rw7G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	114
Acc36I	ACCTGC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	102
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	1 cut(s)	115
AciI	CCGC	2 cut(s)	55, 115
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	180
AjiI	CACGTC	1 cut(s)	60
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	154
BmgBI	CACGTC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseRI	GAGGAG	3 cut(s)	65, 242, 245
BseXI	GCAGC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	115
BshNI	GGYRCC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	88
BspACI	CCGC	2 cut(s)	55, 115
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	104
BspMAI	CTGCAG	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	102
BsrBI	CCGCTC	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	107
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	150
BtrI	CACGTC	1 cut(s)	60
BveI	ACCTGC	1 cut(s)	114
CseI	GACGC	1 cut(s)	6
CviAII	CATG	4 cut(s)	83, 88, 94, 202
CviJI	RGCY	1 cut(s)	141
CviKI_1	RGCY	1 cut(s)	141
FaeI	CATG	4 cut(s)	86, 91, 97, 205
FaiI	YATR	4 cut(s)	84, 89, 95, 203
FatI	CATG	4 cut(s)	82, 87, 93, 201
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	139
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	86, 91, 97, 205
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	159
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	109, 133
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	86, 91, 97, 205
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	4 cut(s)	27, 119, 166, 209
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	1 cut(s)	59
MbiI	CCGCTC	1 cut(s)	55
MluCI	AATT	1 cut(s)	32
MnlI	CCTC	5 cut(s)	43, 209, 220, 223, 225
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	115
NciI	CCSGG	1 cut(s)	154
NlaIII	CATG	4 cut(s)	86, 91, 97, 205
NlaIV	GGNNCC	1 cut(s)	104
PaqCI	CACCTGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	92
SatI	GCNGC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	4 cut(s)	62, 108, 143, 178
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	2 cut(s)	55, 115
StyD4I	CCNGG	1 cut(s)	152
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	170
TseI	GCWGC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	44, 110
Van91I	CCANNNNNTGG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.