Prupe.5G171500_v2.0.a1

Wall-associated receptor kinase galacturonan-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013565
Physical Location & Seq
Reverse (-)
14652579 .. 14654509
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G171500.1

Sequence Viewer

Length: 954 bp
ATGAGTACTAGTACAACTATGCTCATTCTCAGCTTCCTCTACCTTCTATTTTCAGCATTAATTCCATCAAATTCAGGCAATGCTACATGCAGATCCTATTGTGGAAACCTCACCATAGATTACCCATTTGCGCTCCATTCGGGCTGCGGCCACCCGGGTTTTCGAGAACTCCTATACTGCATAAACGATGTGCTTATGTTTCACATAAGCTCAGGATCTTACAGGGTCCTAGACATAGACTATGCTTATCAAGCCCTCACTCTACATGACCCTCACATGTCAACTTGTGACAACATAGTGCTAGGAGCAAAGGGTAACGGCTTCTCCGTCGAGCAATGGCGGACCCCGTACATGAATCCGACGGCTGACAACGTATTCATGTTGATAGGCTGCTCAGCTCAATCACCACTCTTCCAAGGCTTTCCGGGAAAGCACTTGCCATGTAGAAACGTTTCAGGCATGAGCTGTGAAGAATACTACGGTTGCCCAGCATGGGATTTGCTGGGCGGCCATAGGAAGGTGGGCTCCATGTTTGGGTCAGGGCCACCTGAGTGCTGTGCAGTGCCATTTGAGGCCATCAAGGCCATTAATCTTACCAGGCTTCAGTGTGAAGGGTACAGCAGTGCCTATAGTCTTGCCCCATTGAGGCTTGATGGGGCTAATGGGTGGTCTTATGGGATCCGAGTGAAATATTCTGTTCAAGAAAATGATGAATTTTGTAGGGCTTGTGAGGCTACTGGTGGCACCTGCGGGTATGGAACTGATGGCATTAGGCAATTGTGCATGTGTGGGAAATTGAATTCTACATCAAATTGTGATTCTGTAAAGTCATCATCAACAAGAACATATTCTGTGGTGGACAGCTATACATTAATAGGATCACTGGTGTGTCTGCTAGCATGGATTACAAAGAACCATTATCCATCACCATATGTTATGCATCTCATTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind

Protein Analysis

318

Amino Acids

34.67

Weight (kDa)

6.28

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013565)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50290
fragaria_vesca FvH4_5g05500
malus_domestica MD06G1172100.v1.1 MD14G1178000.v1.1
prunus_persica Prupe.5G171500_v2.0.a1
pyrus_communis pycom06g15330 pycom14g14850
rosa_chinensis RchiOBHm_Chr7g0193341
rosa_laevigata RLG00000004278
rosa_multiflora Rmu_ssc0000092.1_g000009
rosa_roxburghii Rroxscaffold_3G00262200
rosa_rugosa Rorug07G0009000
rosa_samantha Rh7AG134800 Rh7AG135200 Rh7BG135500 Rh7CG138900 Rh7DG136900
rosa_wichuraiana Rw7G011520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 755
Acc36I ACCTGC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 743
AciI CCGC 4 cut(s) 147, 340, 507, 750
AclI AACGTT 1 cut(s) 450
AclWI GGATC 5 cut(s) 87, 223, 673, 686, 886
AcoI YGGCCR 2 cut(s) 148, 508
AcsI RAATTY 3 cut(s) 70, 713, 799
AcuI CTGAAG 1 cut(s) 587
AfaI GTAC 4 cut(s) 7, 13, 350, 617
AfiI CCNNNNNNNGG 4 cut(s) 493, 517, 534, 645
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 2 cut(s) 701, 799
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 596
AleI CACNNNNGTG 2 cut(s) 550, 886
AluBI AGCT 5 cut(s) 33, 210, 398, 465, 864
AluI AGCT 5 cut(s) 33, 210, 398, 465, 864
AlwI GGATC 5 cut(s) 87, 223, 673, 686, 886
Ama87I CYCGRG 1 cut(s) 154
AoxI GGCC 5 cut(s) 148, 508, 542, 573, 582
ApeKI GCWGC 2 cut(s) 144, 390
ApoI RAATTY 3 cut(s) 70, 713, 799
AseI ATTAAT 3 cut(s) 59, 588, 872
Asp700I GAANNNNTTC 2 cut(s) 451, 847
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 3 cut(s) 226, 342, 542
AsuC2I CCSGG 3 cut(s) 155, 156, 426
AsuHPI GGTGA 3 cut(s) 103, 396, 918
AsuNHI GCTAGC 1 cut(s) 895
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 2 cut(s) 226, 342
BaeI ACNNNNGTAYC 2 cut(s) 607, 640
BamHI GGATCC 1 cut(s) 678
BanI GGYRCC 1 cut(s) 743
BanII GRGCYC 1 cut(s) 527
BbvI GCAGC 2 cut(s) 131, 377
BccI CCATC 5 cut(s) 73, 584, 647, 758, 931
BceAI ACGGC 2 cut(s) 334, 378
BciT130I CCWGG 1 cut(s) 598
BcnI CCSGG 3 cut(s) 155, 156, 426
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 4 cut(s) 9, 230, 302, 896
BfmI CTRYAG 1 cut(s) 628
BfuAI ACCTGC 1 cut(s) 755
BglI GCCNNNNNGGC 1 cut(s) 581
BisI GCNGC 4 cut(s) 145, 148, 391, 508
BlpI GCTNAGC 1 cut(s) 394
BlsI GCNGC 4 cut(s) 146, 149, 392, 509
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 4 cut(s) 155, 156, 426, 598
Bme18I GGWCC 2 cut(s) 226, 342
BmeT110I CYCGRG 1 cut(s) 154
BmgT120I GGNCC 3 cut(s) 226, 342, 542
BmiI GGNNCC 5 cut(s) 227, 344, 526, 680, 745
BmrFI CCNGG 4 cut(s) 155, 156, 426, 598
BmsI GCATC 1 cut(s) 949
BmtI GCTAGC 1 cut(s) 899
Bpu10I CCTNAGC 1 cut(s) 211
Bpu1102I GCTNAGC 1 cut(s) 394
BpuMI CCSGG 3 cut(s) 155, 156, 426
BsaJI CCNNGG 2 cut(s) 154, 415
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 4 cut(s) 493, 517, 534, 645
Bse1I ACTGG 2 cut(s) 742, 888
Bse3DI GCAATG 2 cut(s) 85, 341
BseBI CCWGG 1 cut(s) 598
BseDI CCNNGG 2 cut(s) 154, 415
BseLI CCNNNNNNNGG 4 cut(s) 493, 517, 534, 645
BseMI GCAATG 2 cut(s) 85, 341
BseMII CTCAG 4 cut(s) 43, 225, 408, 540
BseNI ACTGG 2 cut(s) 742, 888
BseXI GCAGC 2 cut(s) 131, 377
BseYI CCCAGC 2 cut(s) 487, 502
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 5 cut(s) 150, 510, 544, 575, 584
BshNI GGYRCC 1 cut(s) 743
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 2 cut(s) 155, 425
BslI CCNNNNNNNGG 4 cut(s) 493, 517, 534, 645
BsnI GGCC 5 cut(s) 150, 510, 544, 575, 584
BsoBI CYCGRG 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 527
Bsp143I GATC 4 cut(s) 92, 215, 678, 878
Bsp1720I GCTNAGC 1 cut(s) 394
BspACI CCGC 4 cut(s) 147, 340, 507, 750
BspANI GGCC 5 cut(s) 150, 510, 544, 575, 584
BspCNI CTCAG 4 cut(s) 42, 224, 407, 541
BspLI GGNNCC 5 cut(s) 227, 344, 526, 680, 745
BspMI ACCTGC 1 cut(s) 755
BspOI GCTAGC 1 cut(s) 899
BspPI GGATC 5 cut(s) 87, 223, 673, 686, 886
BspT107I GGYRCC 1 cut(s) 743
BsrDI GCAATG 2 cut(s) 85, 341
BsrI ACTGG 2 cut(s) 742, 888
BssECI CCNNGG 2 cut(s) 154, 415
BssMI GATC 4 cut(s) 92, 215, 678, 878
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 598
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 897
BstDEI CTNAG 4 cut(s) 29, 211, 394, 549
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 4 cut(s) 95, 218, 681, 881
BstMBI GATC 4 cut(s) 92, 215, 678, 878
BstMWI GCNNNNNNNGC 3 cut(s) 251, 581, 731
BstNI CCWGG 1 cut(s) 598
BstNSI RCATGY 3 cut(s) 90, 280, 787
BstSCI CCNGG 4 cut(s) 153, 154, 424, 596
BstSFI CTRYAG 1 cut(s) 628
BstV1I GCAGC 2 cut(s) 131, 377
BstX2I RGATCY 3 cut(s) 92, 215, 678
BstYI RGATCY 3 cut(s) 92, 215, 678
BsuRI GGCC 5 cut(s) 150, 510, 544, 575, 584
BtsI GCAGTG 2 cut(s) 567, 628
BtsIMutI CAGTG 4 cut(s) 567, 611, 628, 881
BveI ACCTGC 1 cut(s) 755
Cac8I GCNNGC 1 cut(s) 897
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 3 cut(s) 226, 342, 542
Cfr9I CCCGGG 1 cut(s) 154
Csp6I GTAC 4 cut(s) 6, 12, 349, 616
CviQI GTAC 4 cut(s) 6, 12, 349, 616
DdeI CTNAG 4 cut(s) 29, 211, 394, 549
DpnI GATC 4 cut(s) 94, 217, 680, 880
DpnII GATC 4 cut(s) 92, 215, 678, 878
EaeI YGGCCR 2 cut(s) 148, 508
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
EciI GGCGGA 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 527
Eco47I GGWCC 2 cut(s) 226, 342
Eco57I CTGAAG 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 596
EcoT14I CCWWGG 1 cut(s) 415
EcoT22I ATGCAT 1 cut(s) 942
EcoT38I GRGCYC 1 cut(s) 527
ErhI CCWWGG 1 cut(s) 415
FauI CCCGC 1 cut(s) 743
FauNDI CATATG 1 cut(s) 931
Fnu4HI GCNGC 4 cut(s) 145, 148, 391, 508
FriOI GRGCYC 1 cut(s) 527
Fsp4HI GCNGC 4 cut(s) 145, 148, 391, 508
FspBI CTAG 4 cut(s) 9, 230, 302, 896
GlaI GCGC 1 cut(s) 132
GluI GCNGC 4 cut(s) 145, 148, 391, 508
GsaI CCCAGC 2 cut(s) 491, 506
HaeIII GGCC 5 cut(s) 150, 510, 544, 575, 584
HapII CCGG 2 cut(s) 155, 425
HhaI GCGC 1 cut(s) 133
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 2 cut(s) 355, 818
HpaII CCGG 2 cut(s) 155, 425
HphI GGTGA 3 cut(s) 103, 396, 918
Hpy166II GTNNAC 2 cut(s) 282, 859
Hpy188I TCNGA 2 cut(s) 360, 683
Hpy188III TCNNGA 3 cut(s) 164, 213, 701
Hpy8I GTNNAC 2 cut(s) 282, 859
Hpy99I CGWCG 2 cut(s) 332, 364
HpyAV CCTTC 3 cut(s) 53, 511, 605
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 2 cut(s) 372, 450
HpyCH4V TGCA 5 cut(s) 90, 180, 560, 783, 940
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 581, 731
HpyF3I CTNAG 4 cut(s) 29, 211, 394, 549
HpySE526I ACGT 2 cut(s) 372, 450
HspAI GCGC 1 cut(s) 131
Kzo9I GATC 4 cut(s) 92, 215, 678, 878
LmnI GCTCC 3 cut(s) 138, 305, 530
Lsp1109I GCAGC 2 cut(s) 131, 377
LweI GCATC 1 cut(s) 949
MaeI CTAG 4 cut(s) 9, 230, 302, 896
MaeII ACGT 2 cut(s) 372, 450
MaeIII GTNAC 2 cut(s) 287, 314
MalI GATC 4 cut(s) 94, 217, 680, 880
MboI GATC 4 cut(s) 92, 215, 678, 878
MboII GAAGA 2 cut(s) 403, 482
MfeI CAATTG 1 cut(s) 776
MflI RGATCY 3 cut(s) 92, 215, 678
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 7 cut(s) 60, 70, 713, 776, 794, 799, 811
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 7 cut(s) 47, 119, 266, 282, 565, 639, 724
Mph1103I ATGCAT 1 cut(s) 942
MroXI GAANNNNTTC 2 cut(s) 451, 847
MseI TTAA 3 cut(s) 59, 588, 872
MslI CAYNNNNRTG 2 cut(s) 550, 886
MspI CCGG 2 cut(s) 155, 425
MspR9I CCNGG 4 cut(s) 155, 156, 426, 598
MunI CAATTG 1 cut(s) 776
MvaI CCWGG 1 cut(s) 598
MwoI GCNNNNNNNGC 3 cut(s) 251, 581, 731
NciI CCSGG 3 cut(s) 155, 156, 426
NdeI CATATG 1 cut(s) 931
NdeII GATC 4 cut(s) 92, 215, 678, 878
NheI GCTAGC 1 cut(s) 895
NlaIV GGNNCC 5 cut(s) 227, 344, 526, 680, 745
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 942
NspI RCATGY 3 cut(s) 90, 280, 787
OliI CACNNNNGTG 2 cut(s) 550, 886
PaqCI CACCTGC 1 cut(s) 755
PciI ACATGT 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PdmI GAANNNNTTC 2 cut(s) 451, 847
PfeI GAWTC 2 cut(s) 355, 818
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 4 cut(s) 146, 149, 392, 509
PpuMI RGGWCCY 1 cut(s) 226
PscI ACATGT 1 cut(s) 276
PshBI ATTAAT 3 cut(s) 59, 588, 872
Psp1406I AACGTT 1 cut(s) 450
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 596
PspFI CCCAGC 2 cut(s) 487, 502
PspGI CCWGG 1 cut(s) 596
PspN4I GGNNCC 5 cut(s) 227, 344, 526, 680, 745
PspPI GGNCC 3 cut(s) 226, 342, 542
PspPPI RGGWCCY 1 cut(s) 226
PsuI RGATCY 3 cut(s) 92, 215, 678
RsaI GTAC 4 cut(s) 7, 13, 350, 617
RsaNI GTAC 4 cut(s) 6, 12, 349, 616
RseI CAYNNNNRTG 2 cut(s) 550, 886
SaqAI TTAA 3 cut(s) 59, 588, 872
SatI GCNGC 4 cut(s) 145, 148, 391, 508
Sau3AI GATC 4 cut(s) 92, 215, 678, 878
Sau96I GGNCC 3 cut(s) 226, 342, 542
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 4 cut(s) 155, 156, 426, 598
SduI GDGCHC 1 cut(s) 527
SfaNI GCATC 1 cut(s) 949
SfcI CTRYAG 1 cut(s) 628
SfiI GGCCNNNNNGGCC 1 cut(s) 581
SinI GGWCC 2 cut(s) 226, 342
SmaI CCCGGG 1 cut(s) 156
SmiMI CAYNNNNRTG 2 cut(s) 550, 886
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 7 cut(s) 60, 70, 713, 776, 794, 799, 811
SsiI CCGC 4 cut(s) 147, 340, 507, 750
SspI AATATT 1 cut(s) 692
SspMI CTAG 4 cut(s) 9, 230, 302, 896
StyD4I CCNGG 4 cut(s) 153, 154, 424, 596
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 2 cut(s) 375, 453
TaqI TCGA 2 cut(s) 163, 330
TasI AATT 7 cut(s) 60, 70, 713, 776, 794, 799, 811
TatI WGTACW 2 cut(s) 5, 11
TauI GCSGC 2 cut(s) 150, 510
TfiI GAWTC 2 cut(s) 355, 818
Tru1I TTAA 3 cut(s) 59, 588, 872
Tru9I TTAA 3 cut(s) 59, 588, 872
TscAI CASTG 4 cut(s) 567, 611, 628, 888
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 2 cut(s) 144, 390
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 3 cut(s) 367, 368, 726
TspGWI ACGGA 1 cut(s) 316
TspMI CCCGGG 1 cut(s) 154
TspRI CASTG 4 cut(s) 567, 611, 628, 888
VpaK11BI GGWCC 2 cut(s) 226, 342
VspI ATTAAT 3 cut(s) 59, 588, 872
XapI RAATTY 3 cut(s) 70, 713, 799
XceI RCATGY 3 cut(s) 90, 280, 787
XmaI CCCGGG 1 cut(s) 154
XmnI GAANNNNTTC 2 cut(s) 451, 847
XspI CTAG 4 cut(s) 9, 230, 302, 896
ZrmI AGTACT 1 cut(s) 7
Zsp2I ATGCAT 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.