Rmu_ssc0000092.1_g000009

Wall-associated receptor kinase galacturonan-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000092.1
OG0013565
Physical Location & Seq
Forward (+)
38255 .. 39412
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000092.1_g000009.1.cds

Sequence Viewer

Length: 900 bp
atgaatactactgctatgctcattctgagcttcctccatcttgtaatttcagtactaattccatcaactgcaggcaacacatgtagatcctactgtggaaacataaccatagactacccctttgccatccttcccgggtgtggccacccgggttttcgagacctcctgtactgcatcaacgatgttcttatgttccacattagctcaggatcctacagggttctggagatagactatgcttaccaagccctcactctacatgaccctcacatgtcaacttgtgacaccattgtgctaggtgcaaaggggaacggcttcgcagttgagcaatggcgggcgccatacatgaatccgtccgcagacaatgtcttcatgctgataggctgctcagctcagtcgccactcttccaaggcttcccaggaaagcacttgccatgtagaaacgtttcgggaatgagctgtgaggagtactatggctgccctgcttgggaccttctgggccatagaatggtgggctccaagttcggctcaggcccacctgagtgttgtgctgtgccttttgaatctatcaagtcagttaacctcagtaggcttcagtgtgaaggatacagcagcgcttacaatcttgcaccattgaggcttgatggggctaatggatggtcttatgggatccatgtgaagtattctgttcaagaaaatgatgagttctgtagggcgtgtgaggctaccggcggcacttgcgggtacggtaccgatggcatcaggcaattatgcatgtgtgggagcacaaattcgacatcaaactgcgactctgtgaaatcatcatcaggaagaacatactcaaacggaaacacagtcacaggagtactgatgtgtttgctagcttggattgcaatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind

Protein Analysis

299

Amino Acids

32.34

Weight (kDa)

5.86

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013565)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50290
fragaria_vesca FvH4_5g05500
malus_domestica MD06G1172100.v1.1 MD14G1178000.v1.1
prunus_persica Prupe.5G171500_v2.0.a1
pyrus_communis pycom06g15330 pycom14g14850
rosa_chinensis RchiOBHm_Chr7g0193341
rosa_laevigata RLG00000004278
rosa_multiflora Rmu_ssc0000092.1_g000009
rosa_roxburghii Rroxscaffold_3G00262200
rosa_rugosa Rorug07G0009000
rosa_samantha Rh7AG134800 Rh7AG135200 Rh7BG135500 Rh7CG138900 Rh7DG136900
rosa_wichuraiana Rw7G011520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 749
AccB1I GGYRCC 2 cut(s) 337, 749
AccB7I CCANNNNNTGG 1 cut(s) 508
AciI CCGC 4 cut(s) 334, 357, 732, 741
AclI AACGTT 1 cut(s) 444
AclWI GGATC 5 cut(s) 81, 204, 217, 664, 677
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 1 cut(s) 790
AcuI CTGAAG 1 cut(s) 578
AcyI GRCGYC 1 cut(s) 338
AfaI GTAC 6 cut(s) 54, 170, 470, 746, 751, 867
AfeI AGCGCT 1 cut(s) 616
AfiI CCNNNNNNNGG 3 cut(s) 140, 487, 508
AflIII ACRYGT 2 cut(s) 80, 270
AgsI TTSAA 2 cut(s) 563, 692
AjnI CCWGG 1 cut(s) 418
AleI CACNNNNGTG 2 cut(s) 290, 541
AluBI AGCT 5 cut(s) 30, 204, 392, 459, 884
AluI AGCT 5 cut(s) 30, 204, 392, 459, 884
Alw21I GWGCWC 1 cut(s) 788
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 5 cut(s) 81, 204, 217, 664, 677
Ama87I CYCGRG 2 cut(s) 134, 148
Aor51HI AGCGCT 1 cut(s) 616
AoxI GGCC 3 cut(s) 142, 499, 532
ApeKI GCWGC 3 cut(s) 384, 477, 612
ApoI RAATTY 1 cut(s) 790
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
Asp700I GAANNNNTTC 2 cut(s) 314, 445
Asp718I GGTACC 1 cut(s) 749
AspLEI GCGC 2 cut(s) 340, 617
AspS9I GGNCC 3 cut(s) 490, 499, 533
AsuC2I CCSGG 4 cut(s) 135, 136, 149, 150
AsuNHI GCTAGC 1 cut(s) 880
AvaI CYCGRG 2 cut(s) 134, 148
AvaII GGWCC 1 cut(s) 490
BalI TGGCCA 1 cut(s) 144
BamHI GGATCC 2 cut(s) 209, 669
BanI GGYRCC 2 cut(s) 337, 749
BanII GRGCYC 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 788
BbvI GCAGC 3 cut(s) 371, 464, 624
BccI CCATC 6 cut(s) 45, 70, 134, 638, 651, 749
BceAI ACGGC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 420
BciVI GTATCC 1 cut(s) 599
BcnI CCSGG 4 cut(s) 135, 136, 149, 150
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 2 cut(s) 296, 881
BfmI CTRYAG 3 cut(s) 69, 214, 709
BfoI RGCGCY 2 cut(s) 341, 618
BfuI GTATCC 1 cut(s) 599
BisI GCNGC 4 cut(s) 385, 478, 613, 733
BlpI GCTNAGC 1 cut(s) 388
BlsI GCNGC 4 cut(s) 386, 479, 614, 734
BmcAI AGTACT 3 cut(s) 54, 470, 867
Bme1390I CCNGG 5 cut(s) 135, 136, 149, 150, 420
Bme18I GGWCC 1 cut(s) 490
BmeT110I CYCGRG 2 cut(s) 134, 148
BmgT120I GGNCC 3 cut(s) 490, 499, 533
BmiI GGNNCC 6 cut(s) 211, 339, 491, 517, 671, 751
BmrFI CCNGG 5 cut(s) 135, 136, 149, 150, 420
BmsI GCATC 2 cut(s) 183, 768
BmtI GCTAGC 1 cut(s) 884
BpiI GAAGAC 1 cut(s) 361
BpmI CTGGAG 1 cut(s) 245
Bpu10I CCTNAGC 2 cut(s) 205, 529
Bpu1102I GCTNAGC 1 cut(s) 388
BpuMI CCSGG 4 cut(s) 135, 136, 149, 150
BsaHI GRCGYC 1 cut(s) 338
BsaI GGTCTC 1 cut(s) 153
BsaJI CCNNGG 4 cut(s) 134, 148, 409, 418
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 487, 508
Bse118I RCCGGY 1 cut(s) 728
Bse3DI GCAATG 1 cut(s) 335
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 4 cut(s) 134, 148, 409, 418
BseGI GGATG 2 cut(s) 126, 662
BseLI CCNNNNNNNGG 3 cut(s) 140, 487, 508
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 7 cut(s) 17, 219, 402, 407, 531, 543, 598
BseRI GAGGAG 1 cut(s) 479
BseXI GCAGC 3 cut(s) 371, 464, 624
BshFI GGCC 3 cut(s) 144, 501, 534
BshNI GGYRCC 2 cut(s) 337, 749
BsiHKAI GWGCWC 1 cut(s) 788
BsiHKCI CYCGRG 2 cut(s) 134, 148
BsiSI CCGG 3 cut(s) 135, 149, 729
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 3 cut(s) 140, 487, 508
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 3 cut(s) 144, 501, 534
Bso31I GGTCTC 1 cut(s) 153
BsoBI CYCGRG 2 cut(s) 134, 148
Bsp1286I GDGCHC 2 cut(s) 518, 788
Bsp143I GATC 3 cut(s) 86, 209, 669
Bsp1720I GCTNAGC 1 cut(s) 388
BspACI CCGC 4 cut(s) 334, 357, 732, 741
BspANI GGCC 3 cut(s) 144, 501, 534
BspCNI CTCAG 7 cut(s) 18, 218, 401, 406, 532, 542, 597
BspLI GGNNCC 6 cut(s) 211, 339, 491, 517, 671, 751
BspMAI CTGCAG 1 cut(s) 73
BspOI GCTAGC 1 cut(s) 884
BspPI GGATC 5 cut(s) 81, 204, 217, 664, 677
BspT107I GGYRCC 2 cut(s) 337, 749
BspTNI GGTCTC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 728
BssAI RCCGGY 1 cut(s) 728
BssECI CCNNGG 4 cut(s) 134, 148, 409, 418
BssMI GATC 3 cut(s) 86, 209, 669
BssNI GRCGYC 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 409
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 3 cut(s) 95, 749, 856
Bst6I CTCTTC 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 338
BstC8I GCNNGC 3 cut(s) 73, 336, 882
BstDEI CTNAG 7 cut(s) 26, 205, 388, 393, 529, 540, 584
BstF5I GGATG 2 cut(s) 126, 662
BstH2I RGCGCY 2 cut(s) 341, 618
BstHHI GCGC 2 cut(s) 340, 617
BstKTI GATC 3 cut(s) 89, 212, 672
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 3 cut(s) 86, 209, 669
BstMWI GCNNNNNNNGC 4 cut(s) 245, 722, 738, 890
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 3 cut(s) 84, 274, 778
BstSCI CCNGG 5 cut(s) 133, 134, 147, 148, 418
BstSFI CTRYAG 3 cut(s) 69, 214, 709
BstV1I GCAGC 3 cut(s) 371, 464, 624
BstV2I GAAGAC 1 cut(s) 361
BstX2I RGATCY 3 cut(s) 86, 209, 669
BstYI RGATCY 3 cut(s) 86, 209, 669
BsuI GTATCC 1 cut(s) 599
BsuRI GGCC 3 cut(s) 144, 501, 534
BtsCI GGATG 2 cut(s) 126, 662
BtsIMutI CAGTG 1 cut(s) 602
Cac8I GCNNGC 3 cut(s) 73, 336, 882
CfoI GCGC 2 cut(s) 340, 617
Cfr10I RCCGGY 1 cut(s) 728
Cfr13I GGNCC 3 cut(s) 490, 499, 533
Cfr9I CCCGGG 2 cut(s) 134, 148
Csp6I GTAC 6 cut(s) 53, 169, 469, 745, 750, 866
CviAII CATG 8 cut(s) 81, 260, 271, 346, 373, 435, 674, 775
CviQI GTAC 6 cut(s) 53, 169, 469, 745, 750, 866
DdeI CTNAG 7 cut(s) 26, 205, 388, 393, 529, 540, 584
DinI GGCGCC 1 cut(s) 339
DpnI GATC 3 cut(s) 88, 211, 671
DpnII GATC 3 cut(s) 86, 209, 669
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 518
Eco31I GGTCTC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 490
Eco47III AGCGCT 1 cut(s) 616
Eco57I CTGAAG 1 cut(s) 578
Eco88I CYCGRG 2 cut(s) 134, 148
EcoO109I RGGNCCY 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 409
EcoT22I ATGCAT 1 cut(s) 776
EcoT38I GRGCYC 1 cut(s) 518
EgeI GGCGCC 1 cut(s) 339
EheI GGCGCC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 8 cut(s) 84, 263, 274, 349, 376, 438, 677, 778
FaqI GGGAC 1 cut(s) 503
FatI CATG 8 cut(s) 80, 259, 270, 345, 372, 434, 673, 774
FauI CCCGC 2 cut(s) 327, 734
Fnu4HI GCNGC 4 cut(s) 385, 478, 613, 733
FokI GGATG 2 cut(s) 113, 669
FriOI GRGCYC 1 cut(s) 518
Fsp4HI GCNGC 4 cut(s) 385, 478, 613, 733
FspBI CTAG 2 cut(s) 296, 881
GlaI GCGC 2 cut(s) 339, 616
GluI GCNGC 4 cut(s) 385, 478, 613, 733
GsuI CTGGAG 1 cut(s) 245
HaeII RGCGCY 2 cut(s) 341, 618
HaeIII GGCC 3 cut(s) 144, 501, 534
HapII CCGG 3 cut(s) 135, 149, 729
HhaI GCGC 2 cut(s) 340, 617
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 8 cut(s) 84, 263, 274, 349, 376, 438, 677, 778
Hin6I GCGC 2 cut(s) 338, 615
HinP1I GCGC 2 cut(s) 338, 615
HincII GTYRAC 2 cut(s) 276, 580
HindII GTYRAC 2 cut(s) 276, 580
HinfI GANTC 3 cut(s) 349, 563, 809
HpaI GTTAAC 1 cut(s) 580
HpaII CCGG 3 cut(s) 135, 149, 729
Hpy166II GTNNAC 2 cut(s) 276, 580
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 6 cut(s) 158, 207, 224, 450, 692, 828
Hpy8I GTNNAC 2 cut(s) 276, 580
HpyAV CCTTC 3 cut(s) 140, 503, 596
HpyCH4III ACNGT 3 cut(s) 95, 749, 856
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 6 cut(s) 71, 174, 302, 629, 774, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 722, 738, 890
HpyF3I CTNAG 7 cut(s) 26, 205, 388, 393, 529, 540, 584
HpySE526I ACGT 1 cut(s) 444
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 8 cut(s) 84, 263, 274, 349, 376, 438, 677, 778
HspAI GCGC 2 cut(s) 338, 615
KasI GGCGCC 1 cut(s) 337
KpnI GGTACC 1 cut(s) 753
KspAI GTTAAC 1 cut(s) 580
Kzo9I GATC 3 cut(s) 86, 209, 669
LmnI GCTCC 2 cut(s) 521, 783
Lsp1109I GCAGC 3 cut(s) 371, 464, 624
LweI GCATC 2 cut(s) 183, 768
MaeI CTAG 2 cut(s) 296, 881
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 2 cut(s) 281, 856
MalI GATC 3 cut(s) 88, 211, 671
MboI GATC 3 cut(s) 86, 209, 669
MboII GAAGA 3 cut(s) 361, 397, 843
MflI RGATCY 3 cut(s) 86, 209, 669
MhlI GDGCHC 2 cut(s) 518, 788
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 5 cut(s) 45, 57, 767, 790, 894
MluNI TGGCCA 1 cut(s) 144
Mly113I GGCGCC 1 cut(s) 338
MlyI GAGTC 1 cut(s) 803
MnlI CCTC 8 cut(s) 44, 173, 260, 276, 457, 593, 630, 715
Mox20I TGGCCA 1 cut(s) 144
Mph1103I ATGCAT 1 cut(s) 776
MroXI GAANNNNTTC 2 cut(s) 314, 445
MscI TGGCCA 1 cut(s) 144
MseI TTAA 1 cut(s) 579
MslI CAYNNNNRTG 2 cut(s) 290, 541
Msp20I TGGCCA 1 cut(s) 144
MspI CCGG 3 cut(s) 135, 149, 729
MspR9I CCNGG 5 cut(s) 135, 136, 149, 150, 420
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 4 cut(s) 245, 722, 738, 890
NarI GGCGCC 1 cut(s) 338
NciI CCSGG 4 cut(s) 135, 136, 149, 150
NdeII GATC 3 cut(s) 86, 209, 669
NheI GCTAGC 1 cut(s) 880
NlaIII CATG 8 cut(s) 84, 263, 274, 349, 376, 438, 677, 778
NlaIV GGNNCC 6 cut(s) 211, 339, 491, 517, 671, 751
NmuCI GTSAC 2 cut(s) 281, 856
NsiI ATGCAT 1 cut(s) 776
NspI RCATGY 3 cut(s) 84, 274, 778
OliI CACNNNNGTG 2 cut(s) 290, 541
PciI ACATGT 2 cut(s) 80, 270
PdmI GAANNNNTTC 2 cut(s) 314, 445
PfeI GAWTC 2 cut(s) 349, 563
PflFI GACNNNGTC 1 cut(s) 365
PflMI CCANNNNNTGG 1 cut(s) 508
PkrI GCNGC 4 cut(s) 386, 479, 614, 734
PleI GAGTC 1 cut(s) 803
PluTI GGCGCC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 803
PpuMI RGGWCCY 1 cut(s) 490
PscI ACATGT 2 cut(s) 80, 270
Psp1406I AACGTT 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 6 cut(s) 211, 339, 491, 517, 671, 751
PspPI GGNCC 3 cut(s) 490, 499, 533
PspPPI RGGWCCY 1 cut(s) 490
PstI CTGCAG 1 cut(s) 73
PsuI RGATCY 3 cut(s) 86, 209, 669
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 6 cut(s) 54, 170, 470, 746, 751, 867
RsaNI GTAC 6 cut(s) 53, 169, 469, 745, 750, 866
RseI CAYNNNNRTG 2 cut(s) 290, 541
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 4 cut(s) 385, 478, 613, 733
Sau3AI GATC 3 cut(s) 86, 209, 669
Sau96I GGNCC 3 cut(s) 490, 499, 533
ScaI AGTACT 3 cut(s) 54, 470, 867
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 5 cut(s) 135, 136, 149, 150, 420
SduI GDGCHC 2 cut(s) 518, 788
SfaNI GCATC 2 cut(s) 183, 768
SfcI CTRYAG 3 cut(s) 69, 214, 709
SfoI GGCGCC 1 cut(s) 339
SinI GGWCC 1 cut(s) 490
SmaI CCCGGG 2 cut(s) 136, 150
SmiMI CAYNNNNRTG 2 cut(s) 290, 541
Sse9I AATT 5 cut(s) 45, 57, 767, 790, 894
SsiI CCGC 4 cut(s) 334, 357, 732, 741
SspDI GGCGCC 1 cut(s) 337
SspMI CTAG 2 cut(s) 296, 881
StyD4I CCNGG 5 cut(s) 133, 134, 147, 148, 418
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 3 cut(s) 95, 749, 856
TaiI ACGT 1 cut(s) 447
TaqI TCGA 2 cut(s) 157, 794
TasI AATT 5 cut(s) 45, 57, 767, 790, 894
TatI WGTACW 4 cut(s) 52, 168, 468, 865
TauI GCSGC 1 cut(s) 735
TfiI GAWTC 2 cut(s) 349, 563
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 1 cut(s) 602
TseFI GTSAC 2 cut(s) 281, 856
TseI GCWGC 3 cut(s) 384, 477, 612
Tsp45I GTSAC 2 cut(s) 281, 856
TspDTI ATGAA 3 cut(s) 17, 361, 362
TspGWI ACGGA 2 cut(s) 342, 861
TspMI CCCGGG 2 cut(s) 134, 148
TspRI CASTG 1 cut(s) 602
Tth111I GACNNNGTC 1 cut(s) 365
Van91I CCANNNNNTGG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 1 cut(s) 790
XceI RCATGY 3 cut(s) 84, 274, 778
XmaI CCCGGG 2 cut(s) 134, 148
XmnI GAANNNNTTC 2 cut(s) 314, 445
XspI CTAG 2 cut(s) 296, 881
ZrmI AGTACT 3 cut(s) 54, 470, 867
Zsp2I ATGCAT 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.